Cmc03g0069201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0069201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 13981694 .. 13982491 (-)
RNA-Seq Expression	Cmc03g0069201
Synteny	Cmc03g0069201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCATGTTATTAAGCTCCGATTTATCTTATAATATGTGGGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTAATAGGGTTCCCCACAAAAGGATAGACAAAACTCCCTACGAACTCTGGAAAAGACATGCACCAAATCTTTCCTATTTGAAGGTCTGGGAATGCTTGACTAAGGTACTATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATAATAAAACTATAAATGAATCTAAGGGTACAGAATTCTTTGAGCATGTATTTTCGTTAAAGCAATCACTGTCTGTTCCTAGCCTATCTAAAATAATACATGATCCTGAAAGCCCCTCAGTTGTTAGTGAAACACCTGTTTCTAAAACTGTTAATACTTCGAACTTAGGATGTGAATTAGAACTTAGAAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCATATTTCCTAAGCACCGTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCAAAAACTTGCTTTTAATAGATGAGGATCTTAAAACTTACCAAGAAGCCCTAAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATAAAAAATGGGACTTAGTGGACCTTTCCAAGGGAAGCAAACCAATTAGATGTAAGTGGATCTCCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGGTTAGATAA

mRNA sequence

ATGAATGTCATGTTATTAAGCTCCGATTTATCTTATAATATGTGGGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTAATAGGGTTCCCCACAAAAGGATAGACAAAACTCCCTACGAACTCTGGAAAAGACATGCACCAAATCTTTCCTATTTGAAGGTCTGGGAATGCTTGACTAAGGTACTATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATAATAAAACTATAAATGAATCTAAGGGTACAGAATTCTTTGAGCATGTATTTTCGTTAAAGCAATCACTGTCTGTTCCTAGCCTATCTAAAATAATACATGATCCTGAAAGCCCCTCAGTTGTTAGTGAAACACCTGTTTCTAAAACTGTTAATACTTCGAACTTAGGATGTGAATTAGAACTTAGAAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCATATTTCCTAAGCACCGTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCAAAAACTTGCTTTTAATAGATGAGGATCTTAAAACTTACCAAGAAGCCCTAAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATAAAAAATGGGACTTAGTGGACCTTTCCAAGGGAAGCAAACCAATTAGATGTAAGTGGATCTCCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGGTTAGATAA

Coding sequence (CDS)

ATGAATGTCATGTTATTAAGCTCCGATTTATCTTATAATATGTGGGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTAATAGGGTTCCCCACAAAAGGATAGACAAAACTCCCTACGAACTCTGGAAAAGACATGCACCAAATCTTTCCTATTTGAAGGTCTGGGAATGCTTGACTAAGGTACTATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGCTGCATATAGGTTTATGTGTTTAAATAATAAAACTATAAATGAATCTAAGGGTACAGAATTCTTTGAGCATGTATTTTCGTTAAAGCAATCACTGTCTGTTCCTAGCCTATCTAAAATAATACATGATCCTGAAAGCCCCTCAGTTGTTAGTGAAACACCTGTTTCTAAAACTGTTAATACTTCGAACTTAGGATGTGAATTAGAACTTAGAAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTTGGTCCATATTTCCTAAGCACCGTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCAAAAACTTGCTTTTAATAGATGAGGATCTTAAAACTTACCAAGAAGCCCTAAACTCTGTAGAGTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATAAAAAATGGGACTTAGTGGACCTTTCCAAGGGAAGCAAACCAATTAGATGTAAGTGGATCTCCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGGTTAGATAA

Protein sequence

MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTKVLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLSVPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVERRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGSKPIRCKWISKRKTKPNGSIERYKVR

Homology

[Close]

BLAST of Cmc03g0069201 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 4.0e-123
Identity = 226/265 (85.28%), Postives = 235/265 (88.68%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSA FVLNR+PHKR+DKTPYELWK HAP LSYLKVW CL K
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFI YAQNS AYRFMC N+KTINES+  EFFEHVF LKQSLS
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+PS+VSETPVS+TVNTSNL CELEL RSKRQRTEKSFGP FLST IVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LIDED KTYQEALNSVESSMWKEAIKSELDSLVMN  WDLVDL  G+
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNGSIERYK R
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTR 487

[Close]

BLAST of Cmc03g0069201 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-119
Identity = 220/265 (83.02%), Postives = 232/265 (87.55%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS N+WGE VLSACFVLNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFIGYAQNS AYRFMCLN+KTINES+  EFFEHVFSLKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+ S+VSET VS+ VNTSNL CELELRRSKRQRTEKSF P FLST IVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEID NF NL LIDED KTYQE LNSVE SMWKEAIKSELDSLVMN  WDLVDL  G+
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRC+WI KRKTKPNGS+ERYK R
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKAR 631

[Close]

BLAST of Cmc03g0069201 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 431.0 bits (1107), Expect = 7.3e-117
Identity = 215/265 (81.13%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACF+LNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V  PALKK+TVG KTFDCIFIGYAQNSAAYRFMCLN+KTINES+  EFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLS  +HDPE   +VSE PVS+TV+T NL CELE RRSKRQRTEKSFGP FLST IVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LIDED KTYQEALNSV+S MWKEAIKSELDSL MN  W+LVDL  G+
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNG IERYK R
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKAR 900

[Close]

BLAST of Cmc03g0069201 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.2 bits (1097), Expect = 1.1e-115
Identity = 213/265 (80.38%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACF+LNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V  PALKK+TVG KTFDCIFIGYAQNSAAYRFMCLN+KTINES+  EFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLS  +HDPE   +VSE PVS+ V+T NL CELE RRSKRQRTEKSFGP FLST IVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LI+ED KTYQEALNSV+S MWKEAIKSELDSL MN  W+LVDL  G+
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNG IERYK R
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKAR 900

[Close]

BLAST of Cmc03g0069201 vs. NCBI nr
Match: KAA0045258.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 208/244 (85.25%), Postives = 217/244 (88.93%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACFVLNR+ HKR+DKTPYELWK HAPNLSYLKV  CL K
Sbjct: 488 MNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVDKTPYELWKEHAPNLSYLKVCGCLAK 547

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFIGYAQNS AYRFMCLN+KTINES+  EFFEHVF LKQSLS
Sbjct: 548 VSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLS 607

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+PS VSETPVS+TVNTSNL CELELRRSKRQRTEKSF P FLST IV+
Sbjct: 608 APSLSKRMHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVK 667

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNFKNL LIDED KTYQEALNSVESSMWKE IKSELDSLVMN  WDLVDL  G+
Sbjct: 668 RRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGN 727

Query: 241 KPIR 245
           KPIR
Sbjct: 728 KPIR 731

[Close]

BLAST of Cmc03g0069201 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-18
Identity = 79/294 (26.87%), Postives = 126/294 (42.86%), Query Frame = 0


Query: 4   MLLSSDLSYNMWGEAVLSACFVLNRVPHKRID-KTPYELWKRHAPNLSYLKVWECLTKVL 63
           ML  + L  + WGEAV +AC+++NR P   +  + P  +W     + S+LKV+ C     
Sbjct: 599 MLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAH 658

Query: 64  FPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLSVP 123
            P  +++ +  K+  CIFIGY      YR      K +  S+   F E        +S  
Sbjct: 659 VPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEK 718

Query: 124 SLSKIIHDPESPSVVSETPVSKTVNTSNL-------------GCELE------------- 183
             + II +  +    S  P S    T  +             G +L+             
Sbjct: 719 VKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGE 778

Query: 184 -----LRRSKRQRTEKSFGPYFLSTVIVERRDEIDCNFKNLLLIDEDLKTYQEALNSVES 243
                LRRS+R R E    P   ST  V            L+  D + ++ +E L+  E 
Sbjct: 779 EQHQPLRRSERPRVESRRYP---STEYV------------LISDDREPESLKEVLSHPEK 838

Query: 244 SMWKEAIKSELDSLVMNKKWDLVDLSKGSKPIRCKWISKRKTKPNGSIERYKVR 266
           +   +A++ E++SL  N  + LV+L KG +P++CKW+ K K   +  + RYK R
Sbjct: 839 NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 877

[Close]

BLAST of Cmc03g0069201 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 4   MLLSSDLSYNMWGEAVLSACFVLNRVPHKRI---DKTPYELWKRHAPNLSYLKVWECLTK 63
           M+  + L  + WGEAVL+A +++NR+P + +    KTPYE+W    P L +L+V+   T 
Sbjct: 599 MVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGA-TV 658

Query: 64  VLFPALKKSTVGSKTFDCIFIGYAQN 87
            +    K+     K+F  IF+GY  N
Sbjct: 659 YVHIKNKQGKFDDKSFKSIFVGYEPN 683

[Close]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123
Identity = 226/265 (85.28%), Postives = 235/265 (88.68%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSA FVLNR+PHKR+DKTPYELWK HAP LSYLKVW CL K
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFI YAQNS AYRFMC N+KTINES+  EFFEHVF LKQSLS
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+PS+VSETPVS+TVNTSNL CELEL RSKRQRTEKSFGP FLST IVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LIDED KTYQEALNSVESSMWKEAIKSELDSLVMN  WDLVDL  G+
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNGSIERYK R
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTR 487

[Close]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.6e-120
Identity = 220/265 (83.02%), Postives = 232/265 (87.55%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS N+WGE VLSACFVLNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFIGYAQNS AYRFMCLN+KTINES+  EFFEHVFSLKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+ S+VSET VS+ VNTSNL CELELRRSKRQRTEKSF P FLST IVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEID NF NL LIDED KTYQE LNSVE SMWKEAIKSELDSLVMN  WDLVDL  G+
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRC+WI KRKTKPNGS+ERYK R
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKAR 631

[Close]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.5e-117
Identity = 215/265 (81.13%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACF+LNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V  PALKK+TVG KTFDCIFIGYAQNSAAYRFMCLN+KTINES+  EFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLS  +HDPE   +VSE PVS+TV+T NL CELE RRSKRQRTEKSFGP FLST IVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LIDED KTYQEALNSV+S MWKEAIKSELDSL MN  W+LVDL  G+
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNG IERYK R
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKAR 900

[Close]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.1e-116
Identity = 213/265 (80.38%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACF+LNR+PHKR+DKTPYELWK HAPNLSYLKVW CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V  PALKK+TVG KTFDCIFIGYAQNSAAYRFMCLN+KTINES+  EFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLS  +HDPE   +VSE PVS+ V+T NL CELE RRSKRQRTEKSFGP FLST IVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNF NL LI+ED KTYQEALNSV+S MWKEAIKSELDSL MN  W+LVDL  G+
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWISKRKTKPNGSIERYKVR 266
           KPIRCKWI KRKTKPNG IERYK R
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKAR 900

[Close]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL
Match: A0A5A7TQW7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00950 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.8e-112
Identity = 208/244 (85.25%), Postives = 217/244 (88.93%), Query Frame = 0


Query: 1   MNVMLLSSDLSYNMWGEAVLSACFVLNRVPHKRIDKTPYELWKRHAPNLSYLKVWECLTK 60
           MN MLLSS LS NMWGEAVLSACFVLNR+ HKR+DKTPYELWK HAPNLSYLKV  CL K
Sbjct: 488 MNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVDKTPYELWKEHAPNLSYLKVCGCLAK 547

Query: 61  VLFPALKKSTVGSKTFDCIFIGYAQNSAAYRFMCLNNKTINESKGTEFFEHVFSLKQSLS 120
           V FPALKKSTVGSKTFDCIFIGYAQNS AYRFMCLN+KTINES+  EFFEHVF LKQSLS
Sbjct: 548 VSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLS 607

Query: 121 VPSLSKIIHDPESPSVVSETPVSKTVNTSNLGCELELRRSKRQRTEKSFGPYFLSTVIVE 180
            PSLSK +HDPE+PS VSETPVS+TVNTSNL CELELRRSKRQRTEKSF P FLST IV+
Sbjct: 608 APSLSKRMHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVK 667

Query: 181 RRDEIDCNFKNLLLIDEDLKTYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGS 240
           RRDEIDCNFKNL LIDED KTYQEALNSVESSMWKE IKSELDSLVMN  WDLVDL  G+
Sbjct: 668 RRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGN 727

Query: 241 KPIR 245
           KPIR
Sbjct: 728 KPIR 731

[Close]

BLAST of Cmc03g0069201 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 48.5 bits (114), Expect = 9.5e-06
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 201 TYQEALNSVESSMWKEAIKSELDSLVMNKKWDLVDLSKGSKPIRCKWISKRKTKPNGSIE 260
           TY EA    E  +W  A+  E+ ++     W++  L    KPI CKW+ K K   +G+IE
Sbjct: 88  TYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 147

Query: 261 RYKVR 266
           RYK R
Sbjct: 148 RYKAR 149

[Close]

BLAST of Cmc03g0069201 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 214 WKEAIKSELDSLVMNKKWDLVDLSKGSKPIRCKWISKRKTKPNGSIERYKVR 266
           W +A++ ELD+L  NK W LV        + CKW+ K K   +G+++R K R
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKAR 91

The following BLAST results are available for this feature:

BLAST of Cmc03g0069201 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97996.1	4.0e-123	85.28	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038001.1	1.6e-119	83.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	7.3e-117	81.13	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	1.1e-115	80.38	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045258.1	1.2e-111	85.25	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-cop...	[more]

BLAST of Cmc03g0069201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-18	26.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-08	36.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc03g0069201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFX4	1.9e-123	85.28	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	7.6e-120	83.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C5T2	3.5e-117	81.13	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	5.1e-116	80.38	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TQW7	5.8e-112	85.25	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0069201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.5e-06	38.46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.3e-04	38.46	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..60 e-value: 8.5E-6 score: 27.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..136 coord: 200..265
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0069201.1	Cmc03g0069201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding