Cmc03g0069121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0069121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 13785704 .. 13786351 (-)
RNA-Seq Expression	Cmc03g0069121
Synteny	Cmc03g0069121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGCGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACAAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCACGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGGAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTAAAGCCCTTCGGAGATCCATAG

mRNA sequence

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGCGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACAAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCACGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGGAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTAAAGCCCTTCGGAGATCCATAG

Coding sequence (CDS)

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGCGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACAAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCACGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGGAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTAAAGCCCTTCGGAGATCCATAG

Protein sequence

MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP

Homology

[Close]

BLAST of Cmc03g0069121 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.0 bits (1120), Expect = 1.8e-118
Identity = 210/215 (97.67%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 890  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 949

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 950  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1009

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF
Sbjct: 1010 NLLGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 1069

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1070 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1104

[Close]

BLAST of Cmc03g0069121 vs. NCBI nr
Match: TYK23349.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 435.6 bits (1119), Expect = 2.4e-118
Identity = 210/215 (97.67%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 849  MYLMNYTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 909  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF
Sbjct: 969  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 1028

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1029 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1063

[Close]

BLAST of Cmc03g0069121 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.1e-118
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEF
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEF 1132

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1133 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1167

[Close]

BLAST of Cmc03g0069121 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.1e-118
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEF
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEF 1132

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1133 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1167

[Close]

BLAST of Cmc03g0069121 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.7 bits (1114), Expect = 9.1e-118
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEF
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEF 1311

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1312 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1346

[Close]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38
Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MY M CTRPDIA+ V  +SR+  NP + HW+A++ +LRYL+GT   CL F     +L+GY
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGY 1178

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
             DA+   D D   S++GY+F   GGAISW+S  Q C+A ST E+E+IA    G+E  W+K
Sbjct: 1179 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1238

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
                ++ L      V   CDSQ+ I  +KNS+Y+ +++HI +R+  +++++ + ++ +  
Sbjct: 1239 RFLQELGLHQKEYVV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1298

Query: 181  VRSEKNLADPLTKGLTR 198
            + + +N AD LTK + R
Sbjct: 1299 ISTNENPADMLTKVVPR 1313

[Close]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31
Identity = 73/204 (35.78%), Postives = 116/204 (56.86%), Query Frame = 0


Query: 7    TRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANW 66
            TRPD++Y V+RLS+Y H P   HW+AL+ +LRYL GT D+ +   K   + L  Y DA+W
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 67   VTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLQGD 126
              D D+  ST+GY+  LG   ISW S KQ  + RS+ E+E+ ++     E +WI +L  +
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 127  VPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEK 186
            + +  +  PV I CD+        N V++ + +HI L +  ++  ++ G + +  V +  
Sbjct: 1361 LGIQLSHPPV-IYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHD 1420

Query: 187  NLADPLTKGLTRKMVLDSSVNMGL 210
             LAD LTK L+R    + S  +G+
Sbjct: 1421 QLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 74/213 (34.74%), Postives = 117/213 (54.93%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK---FPVVL 60
            MY+M CTRPD+   V+ LSRY+   N   W  L+ +LRYLKGTID  L F K   F   +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   EGYCDANWVTDNDEVNSTSGYVF-LLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA 120
             GY D++W     +  ST+GY+F +     I W + +Q  +A S+ E+E++AL  A +EA
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  EWIKNLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 180
             W+K L   + +     P+ I  D+Q  I  A N   + +++HI +++   ++ ++   I
Sbjct: 1309 LWLKFLLTSINI-KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1368

Query: 181  SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 210
             LE++ +E  LAD  TK L     ++    +GL
Sbjct: 1369 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-24
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEG 60
           MYLM  TRPD+A  V  LS++  +P   HW AL+ +LRYL+ T  Y L F +     L G
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWI 120
           Y DA+W  D +   STSGY+F L GG +SW+S KQ  +A S+ E E++AL  A QEA W+
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.1e-16
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 4   MNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCD 63
           +  TRPDI+Y V+ + +  H P    +D L+ +LRY+KGTI + L+ +K   + ++ +CD
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 169

Query: 64  ANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEW 119
           ++W        ST+G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E  W
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 8.9e-119
Identity = 210/215 (97.67%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 890  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 949

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 950  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1009

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF
Sbjct: 1010 NLLGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 1069

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1070 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1104

[Close]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118
Identity = 210/215 (97.67%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 849  MYLMNYTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 909  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF
Sbjct: 969  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 1028

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1029 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1063

[Close]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.4e-118
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEF
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEF 1311

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1312 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1346

[Close]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.4e-118
Identity = 209/215 (97.21%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFP VLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 1132

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNM LKPFGDP
Sbjct: 1133 VRSEKNLADPLTKGLTRKMVLDSSVNMDLKPFGDP 1167

[Close]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL
Match: A0A5A7SP23 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001760 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 4.4e-118
Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY 60
            MYLMN TRPDIAY VSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGY
Sbjct: 1090 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1149

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK
Sbjct: 1150 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1209

Query: 121  NLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEF 180
            NL GDVPLWGTSVPVSIQCDSQA ICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTISLEF
Sbjct: 1210 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTISLEF 1269

Query: 181  VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 216
            VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP
Sbjct: 1270 VRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGDP 1304

[Close]

BLAST of Cmc03g0069121 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 0


Query: 1   MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF-NKFPVVLEG 60
           MYL   TR DI++ V++LS+++  P   H  A+  +L Y+KGT+   L + ++  + L+ 
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWI 120
           + DA++ +  D   ST+GY   LG   ISWKS KQ  +++S+ E+E+ AL  A  E  W+
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 KNLQGDVPLWGTSVPVSIQCDSQATICTAKNSVYNGKSRHIRLR-HAVVKQLLKEGTISL 180
                ++ L   S P  + CD+ A I  A N+V++ +++HI    H+V ++ + + T+S 
Sbjct: 506 AQFFRELQL-PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSY 565

[Close]

BLAST of Cmc03g0069121 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-17
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 4   MNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCD 63
           +  TRPDI+Y V+ + +  H P    +D L+ +LRY+KGTI + L+ +K   + ++ +CD
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 169

Query: 64  ANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEW 119
           ++W        ST+G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E  W
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc03g0069121 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 25/83 (30.12%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1  MYLMNCTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFN-KFPVVLEG 60
          MYL   TRPD+ + V+RLS+++         A+  +L Y+KGT+   L ++    + L+ 
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YCDANWVTDNDEVNSTSGYVFLL 83
          + D++W +  D   S +G+  L+
Sbjct: 61 FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc03g0069121 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11299.1	1.8e-118	97.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23349.1	2.4e-118	97.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	9.1e-118	96.74	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	9.1e-118	96.74	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	9.1e-118	96.74	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0069121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.6e-38	40.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.4e-31	35.78	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.4e-28	34.74	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	3.6e-24	47.50	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P92519	6.1e-16	35.34	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0069121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CM58	8.9e-119	97.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJE2	1.2e-118	97.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5T2	4.4e-118	96.74	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C7Z8	4.4e-118	97.21	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SP23	4.4e-118	96.74	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc03g0069121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-22	33.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.4e-17	35.34	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.2e-05	30.12	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 58..184
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 58..184
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 58..198 e-value: 1.52219E-62 score: 189.216
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0069121.1	Cmc03g0069121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding