Cmc03g0067921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0067921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr03: 11258158 .. 11259126 (+)
RNA-Seq Expression	Cmc03g0067921
Synteny	Cmc03g0067921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTACTGATTTATGTTATATTTCCACCTTTGAACCTTCTACTGTTGACTCTGCTCGCAGGGATGAGTATTGGCTAAATGCTATGCAAGATGAGCTACTCGAATTTAAACGAAACAATGTCTGGACATTAGTGTCAAAACCAGAAGGTGTAAACGTTATCGGTACTAAGTGGGTGTTCAAAAATAAAACTGATGAATCTGGATGTGTGACGAAAAATAAAGCCAGACTATTGGCTCAAGGGTATACTCAAGTTGAAGGTATTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGCCATTCGATTATTACTTGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATGTAAAGTGTGCCTTCTTAAATAGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTATTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTCCGAGAGCTTGGTATGACCGGCTAACTGTGTACTTGAGAGGTAAAGGATATTCCAAAGGAGAAATTGACAAGACCTTGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGAATTTCCTCAAGATCTACTAAATAATTTCATTAATATAATGCAGACCGAAATCGAAATGAGCATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTAATATCTCAGGAAAAGTATGCCAAGAATATGGTAAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCTAGTTGCGACACATGTTAAACTTACAAAAAACACTGAAGGTGCTGAAGTTGATCACAAACTTTACAAGAGTATAGTAGGCAGCCTGACATAG

mRNA sequence

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTACTGATTTATGTTATATTTCCACCTTTGAACCTTCTACTGTTGACTCTGCTCGCAGGGATGAGTATTGGCTAAATGCTATGCAAGATGAGCTACTCGAATTTAAACGAAACAATGTCTGGACATTAGTGTCAAAACCAGAAGGTGTAAACGTTATCGGTACTAAGTGGGTGTTCAAAAATAAAACTGATGAATCTGGATGTGTGACGAAAAATAAAGCCAGACTATTGGCTCAAGGGTATACTCAAGTTGAAGGTATTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGCCATTCGATTATTACTTGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATGTAAAGTGTGCCTTCTTAAATAGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTATTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTCCGAGAGCTTGGTATGACCGGCTAACTGTGTACTTGAGAGGTAAAGGATATTCCAAAGGAGAAATTGACAAGACCTTGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGAATTTCCTCAAGATCTACTAAATAATTTCATTAATATAATGCAGACCGAAATCGAAATGAGCATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTAATATCTCAGGAAAAGTATGCCAAGAATATGGTAAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCTAGTTGCGACACATGTTAAACTTACAAAAAACACTGAAGGTGCTGAAGTTGATCACAAACTTTACAAGAGTATAGTAGGCAGCCTGACATAG

Coding sequence (CDS)

ATGCAGACCAGAAGGAAAGAAAAGATTGATTACATGAAGATGGTTACTGATTTATGTTATATTTCCACCTTTGAACCTTCTACTGTTGACTCTGCTCGCAGGGATGAGTATTGGCTAAATGCTATGCAAGATGAGCTACTCGAATTTAAACGAAACAATGTCTGGACATTAGTGTCAAAACCAGAAGGTGTAAACGTTATCGGTACTAAGTGGGTGTTCAAAAATAAAACTGATGAATCTGGATGTGTGACGAAAAATAAAGCCAGACTATTGGCTCAAGGGTATACTCAAGTTGAAGGTATTGACTTTGATGAAACGTTTGCTCCTGTTGCTCGACTTGAAGCCATTCGATTATTACTTGGTATATCATGCATACAGAAATTTAAATTGTATCAGATGGATGTAAAGTGTGCCTTCTTAAATAGATACTTGAATGAGGAGGTTTATGTTGCTCAACCAAAAGGTTTTATTGATTCCGAGCACCCAAAGCATGTGTATAAGCTCAACAAAGCCTTATATGGACTAAAGCAAGCTCCGAGAGCTTGGTATGACCGGCTAACTGTGTACTTGAGAGGTAAAGGATATTCCAAAGGAGAAATTGACAAGACCTTGTTCATACACAGGAAATCTGACCAACTTTTGGTTGCTCAAATTTATGTTGATGACATCATTTTTGGAGAATTTCCTCAAGATCTACTAAATAATTTCATTAATATAATGCAGACCGAAATCGAAATGAGCATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGACATTTTAATATCTCAGGAAAAGTATGCCAAGAATATGGTAAAAAAGTTTGGTTTGGAACAGGCTCGAAATAAGCGGACTCTAGTTGCGACACATGTTAAACTTACAAAAAACACTGAAGGTGCTGAAGTTGATCACAAACTTTACAAGAGTATAGTAGGCAGCCTGACATAG

Protein sequence

MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSKPEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKLYKSIVGSLT

Homology

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BLAST of Cmc03g0067921 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 562.0 bits (1447), Expect = 3.3e-156
Identity = 279/317 (88.01%), Postives = 296/317 (93.38%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYIST EPSTVDSA RDEYWLNAMQ+ELL+F++NNVWTLVSK
Sbjct: 538 MQTRRKEKIDYMKMVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSK 597

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVIGTKWVFKNKTDE+GCVTKNKA+L+AQGYTQVEGIDFDETFA VARLEAIRLLL
Sbjct: 598 PEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLL 657

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFL+ YLNEEVYVAQPKGF+DSEHPKH+YKLNKALYGLKQA R
Sbjct: 658 GISCIQKFKLYQMDVKSAFLDGYLNEEVYVAQPKGFVDSEHPKHMYKLNKALYGLKQASR 717

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYD+LTVYLRGKGYS+GEIDKTLFI RKSDQLLVAQIYVDDIIF  FP DL+NNFI   
Sbjct: 718 AWYDQLTVYLRGKGYSRGEIDKTLFIQRKSDQLLVAQIYVDDIIFRGFPHDLVNNFI--- 777

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
             E EMSMVGELSCFLGLQIKQKNDDI ISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 778 --EFEMSMVGELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPAATHVKL 837

Query: 301 TKNTEGAEVDHKLYKSI 318
           TK+TE +EVDHKLY+SI
Sbjct: 838 TKDTESSEVDHKLYRSI 849

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BLAST of Cmc03g0067921 vs. NCBI nr
Match: KAA0033021.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 545.8 bits (1405), Expect = 2.5e-151
Identity = 279/321 (86.92%), Postives = 284/321 (88.47%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVDSARRDEYWLNAMQDELLEF+RNNVWTLVSK
Sbjct: 63  MQTRRKEKIDYMKMVADLCYISTFEPSTVDSARRDEYWLNAMQDELLEFRRNNVWTLVSK 122

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVI                                GIDFDETFAPVARLEAIRLLL
Sbjct: 123 PEGVNVI--------------------------------GIDFDETFAPVARLEAIRLLL 182

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQAPR
Sbjct: 183 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPR 242

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM
Sbjct: 243 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 302

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
           Q+EIEMSMVGELSCFLGLQIKQKNDDILISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 303 QSEIEMSMVGELSCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKL 351

Query: 301 TKNTEGAEVDHKLYKSIVGSL 322
           TKNTEGAEVDHKLYKSIVG+L
Sbjct: 363 TKNTEGAEVDHKLYKSIVGNL 351

[Close]

BLAST of Cmc03g0067921 vs. NCBI nr
Match: TYK03438.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 545.8 bits (1405), Expect = 2.5e-151
Identity = 279/321 (86.92%), Postives = 284/321 (88.47%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVDSARRDEYWLNAMQDELLEF+RNNVWTLVSK
Sbjct: 63  MQTRRKEKIDYMKMVADLCYISTFEPSTVDSARRDEYWLNAMQDELLEFRRNNVWTLVSK 122

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVI                                GIDFDETFAPVARLEAIRLLL
Sbjct: 123 PEGVNVI--------------------------------GIDFDETFAPVARLEAIRLLL 182

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQAPR
Sbjct: 183 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPR 242

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM
Sbjct: 243 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 302

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
           Q+EIEMSMVGELSCFLGLQIKQKNDDILISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 303 QSEIEMSMVGELSCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKL 351

Query: 301 TKNTEGAEVDHKLYKSIVGSL 322
           TKNTEGAEVDHKLYKSIVG+L
Sbjct: 363 TKNTEGAEVDHKLYKSIVGNL 351

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BLAST of Cmc03g0067921 vs. NCBI nr
Match: KAA0053137.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 536.6 bits (1381), Expect = 1.5e-148
Identity = 260/301 (86.38%), Postives = 284/301 (94.35%), Query Frame = 0


Query: 21  ISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSKPEGVNVIGTKWVFKNKTDES 80
           ++ +E  T++SA +DEYWLN MQ+ELL+F+RNNVWTL+SKPEGVNVIGTKW+FKNKTDE+
Sbjct: 421 LNMYEVRTMNSALKDEYWLNTMQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDET 480

Query: 81  GCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFL 140
           GCVTKNKARL+AQGYTQVEG+DFDETFAPVARLEAIRLLLGISCIQKFKLYQ+DVK  FL
Sbjct: 481 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFL 540

Query: 141 NRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEI 200
           N YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQA RAWYDRLTVYLRG+GYS+GEI
Sbjct: 541 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALRAWYDRLTVYLRGRGYSRGEI 600

Query: 201 DKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQI 260
           DK LFIHRKSDQLLVAQIYVDDIIFG FP DL+NNFINIMQ+E EMSMVGELSCFLGLQI
Sbjct: 601 DKILFIHRKSDQLLVAQIYVDDIIFGGFPLDLINNFINIMQSEFEMSMVGELSCFLGLQI 660

Query: 261 KQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKLYKSIVGS 320
           KQKND I ISQEKYA+NMVKKFGL+QARNKRT  ATHVKLTK+TEGAEVDHKLY+SIVGS
Sbjct: 661 KQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAATHVKLTKDTEGAEVDHKLYRSIVGS 720

Query: 321 L 322
           L
Sbjct: 721 L 721

[Close]

BLAST of Cmc03g0067921 vs. NCBI nr
Match: TYJ98791.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 523.5 bits (1347), Expect = 1.3e-144
Identity = 257/285 (90.18%), Postives = 270/285 (94.74%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVD + RDEY LNAMQ+ELL+FKRNNVWTLV K
Sbjct: 642 MQTRRKEKIDYMKMVADLCYISTFEPSTVDFSLRDEYLLNAMQEELLQFKRNNVWTLVLK 701

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVIGTKWVFKNKTDE+GCVTKNKARL+AQGYTQVEGIDFDETF+PVARLEAIRLLL
Sbjct: 702 PEGVNVIGTKWVFKNKTDEAGCVTKNKARLVAQGYTQVEGIDFDETFSPVARLEAIRLLL 761

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPK F+DSEH KHVYKLNKALYGLKQAPR
Sbjct: 762 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKDFVDSEHSKHVYKLNKALYGLKQAPR 821

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIFG FPQ L+NNFI +M
Sbjct: 822 AWYDRLTVYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQVLVNNFIYVM 881

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLE 286
           Q+E EMSMVGELSCFLGLQIKQKNDDI ISQEKYA+NMVKKFG +
Sbjct: 882 QSEFEMSMVGELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGYQ 926

[Close]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 6.7e-51
Identity = 110/298 (36.91%), Postives = 171/298 (57.38%), Query Frame = 0


Query: 25   EPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSKPEG-VNVIGTKWVFKNKTDESGCV 84
            EP T   A +DE W NAM  E+     N+ W LV  P   V ++G +W+F  K +  G +
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 85   TKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFLNRY 144
             + KARL+A+GY Q  G+D+ ETF+PV +  +IR++LG++  + + + Q+DV  AFL   
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 145  LNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEIDKT 204
            L ++VY++QP GFID + P +V KL KALYGLKQAPRAWY  L  YL   G+     D +
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 205  LFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQIKQK 264
            LF+ ++   ++   +YVDDI+       LL+N ++ +     +    EL  FLG++ K+ 
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRV 1194

Query: 265  NDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKLYKSIVGSL 322
               + +SQ +Y  +++ +  +  A+   T +A   KL+  +     D   Y+ IVGSL
Sbjct: 1195 PTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSL 1252

[Close]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-50
Identity = 106/298 (35.57%), Postives = 171/298 (57.38%), Query Frame = 0


Query: 25   EPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLV-SKPEGVNVIGTKWVFKNKTDESGCV 84
            EP T   A +D+ W  AM  E+     N+ W LV   P  V ++G +W+F  K +  G +
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 85   TKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFLNRY 144
             + KARL+A+GY Q  G+D+ ETF+PV +  +IR++LG++  + + + Q+DV  AFL   
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 145  LNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEIDKT 204
            L +EVY++QP GF+D + P +V +L KA+YGLKQAPRAWY  L  YL   G+     D +
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 205  LFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQIKQK 264
            LF+ ++   ++   +YVDDI+       LL + ++ +     +    +L  FLG++ K+ 
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRV 1177

Query: 265  NDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKLYKSIVGSL 322
               + +SQ +Y  +++ +  +  A+   T +AT  KLT ++     D   Y+ IVGSL
Sbjct: 1178 PQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSL 1235

[Close]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 186.8 bits (473), Expect = 3.8e-46
Identity = 101/278 (36.33%), Postives = 162/278 (58.27%), Query Frame = 0


Query: 13   KMVTDLCYISTFEPSTVDSAR-RDE--YWLNAMQDELLEFKRNNVWTLVSKPEGVNVIGT 72
            K+V +   I    P++ D  + RD+   W  A+  EL   K NN WT+  +PE  N++ +
Sbjct: 878  KVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDS 937

Query: 73   KWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFK 132
            +WVF  K +E G   + KARL+A+G+TQ   ID++ETFAPVAR+ + R +L +      K
Sbjct: 938  RWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLK 997

Query: 133  LYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVY 192
            ++QMDVK AFLN  L EE+Y+  P+G   S +  +V KLNKA+YGLKQA R W++     
Sbjct: 998  VHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQA 1057

Query: 193  LRGKGYSKGEIDKTLFIHRKS--DQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMS 252
            L+   +    +D+ ++I  K   ++ +   +YVDD++        +NNF   +  +  M+
Sbjct: 1058 LKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMT 1117

Query: 253  MVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLE 286
             + E+  F+G++I+ + D I +SQ  Y K ++ KF +E
Sbjct: 1118 DLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNME 1153

[Close]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-43
Identity = 101/292 (34.59%), Postives = 168/292 (57.53%), Query Frame = 0


Query: 39   LNAMQDELLEFKRNNVWTLVSKPEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQV 98
            + AMQ+E+   ++N  + LV  P+G   +  KWVFK K D    + + KARL+ +G+ Q 
Sbjct: 827  MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 886

Query: 99   EGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFID 158
            +GIDFDE F+PV ++ +IR +L ++     ++ Q+DVK AFL+  L EE+Y+ QP+GF  
Sbjct: 887  KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEV 946

Query: 159  SEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEIDKTLFIHRKSD-QLLVAQ 218
            +     V KLNK+LYGLKQAPR WY +   +++ + Y K   D  ++  R S+   ++  
Sbjct: 947  AGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILL 1006

Query: 219  IYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQI--KQKNDDILISQEKYA 278
            +YVDD++     + L+      +    +M  +G     LG++I  ++ +  + +SQEKY 
Sbjct: 1007 LYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYI 1066

Query: 279  KNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHK------LYKSIVGSL 322
            + ++++F ++ A+   T +A H+KL+K      V+ K       Y S VGSL
Sbjct: 1067 ERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSL 1118

[Close]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-19
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTF--EPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLV 60
           M TR K  I+ +     L   +T   EP +V  A +D  W  AMQ+EL    RN  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  SKPEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRL 120
             P   N++G KWVFK K    G + + KARL+A+G+ Q EGI F ET++PV R   IR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 121 LLGIS 124
           +L ++
Sbjct: 121 ILNVA 125

[Close]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.6e-156
Identity = 279/317 (88.01%), Postives = 296/317 (93.38%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYIST EPSTVDSA RDEYWLNAMQ+ELL+F++NNVWTLVSK
Sbjct: 538 MQTRRKEKIDYMKMVADLCYISTVEPSTVDSALRDEYWLNAMQEELLQFRQNNVWTLVSK 597

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVIGTKWVFKNKTDE+GCVTKNKA+L+AQGYTQVEGIDFDETFA VARLEAIRLLL
Sbjct: 598 PEGVNVIGTKWVFKNKTDEAGCVTKNKAKLVAQGYTQVEGIDFDETFASVARLEAIRLLL 657

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFL+ YLNEEVYVAQPKGF+DSEHPKH+YKLNKALYGLKQA R
Sbjct: 658 GISCIQKFKLYQMDVKSAFLDGYLNEEVYVAQPKGFVDSEHPKHMYKLNKALYGLKQASR 717

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYD+LTVYLRGKGYS+GEIDKTLFI RKSDQLLVAQIYVDDIIF  FP DL+NNFI   
Sbjct: 718 AWYDQLTVYLRGKGYSRGEIDKTLFIQRKSDQLLVAQIYVDDIIFRGFPHDLVNNFI--- 777

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
             E EMSMVGELSCFLGLQIKQKNDDI ISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 778 --EFEMSMVGELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGLEQARNKRTPAATHVKL 837

Query: 301 TKNTEGAEVDHKLYKSI 318
           TK+TE +EVDHKLY+SI
Sbjct: 838 TKDTESSEVDHKLYRSI 849

[Close]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL
Match: A0A5D3BWU5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00410 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.2e-151
Identity = 279/321 (86.92%), Postives = 284/321 (88.47%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVDSARRDEYWLNAMQDELLEF+RNNVWTLVSK
Sbjct: 63  MQTRRKEKIDYMKMVADLCYISTFEPSTVDSARRDEYWLNAMQDELLEFRRNNVWTLVSK 122

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVI                                GIDFDETFAPVARLEAIRLLL
Sbjct: 123 PEGVNVI--------------------------------GIDFDETFAPVARLEAIRLLL 182

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQAPR
Sbjct: 183 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPR 242

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM
Sbjct: 243 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 302

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
           Q+EIEMSMVGELSCFLGLQIKQKNDDILISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 303 QSEIEMSMVGELSCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKL 351

Query: 301 TKNTEGAEVDHKLYKSIVGSL 322
           TKNTEGAEVDHKLYKSIVG+L
Sbjct: 363 TKNTEGAEVDHKLYKSIVGNL 351

[Close]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL
Match: A0A5A7SU23 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G001230 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.2e-151
Identity = 279/321 (86.92%), Postives = 284/321 (88.47%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVDSARRDEYWLNAMQDELLEF+RNNVWTLVSK
Sbjct: 63  MQTRRKEKIDYMKMVADLCYISTFEPSTVDSARRDEYWLNAMQDELLEFRRNNVWTLVSK 122

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVI                                GIDFDETFAPVARLEAIRLLL
Sbjct: 123 PEGVNVI--------------------------------GIDFDETFAPVARLEAIRLLL 182

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQAPR
Sbjct: 183 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQAPR 242

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM
Sbjct: 243 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 302

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKL 300
           Q+EIEMSMVGELSCFLGLQIKQKNDDILISQEKYA+NMVKKFGLEQARNKRT  ATHVKL
Sbjct: 303 QSEIEMSMVGELSCFLGLQIKQKNDDILISQEKYARNMVKKFGLEQARNKRTPAATHVKL 351

Query: 301 TKNTEGAEVDHKLYKSIVGSL 322
           TKNTEGAEVDHKLYKSIVG+L
Sbjct: 363 TKNTEGAEVDHKLYKSIVGNL 351

[Close]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL
Match: A0A5D3BPB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001130 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 7.3e-149
Identity = 260/301 (86.38%), Postives = 284/301 (94.35%), Query Frame = 0


Query: 21  ISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSKPEGVNVIGTKWVFKNKTDES 80
           ++ +E  T++SA +DEYWLN MQ+ELL+F+RNNVWTL+SKPEGVNVIGTKW+FKNKTDE+
Sbjct: 421 LNMYEVRTMNSALKDEYWLNTMQEELLQFRRNNVWTLLSKPEGVNVIGTKWIFKNKTDET 480

Query: 81  GCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKCAFL 140
           GCVTKNKARL+AQGYTQVEG+DFDETFAPVARLEAIRLLLGISCIQKFKLYQ+DVK  FL
Sbjct: 481 GCVTKNKARLVAQGYTQVEGVDFDETFAPVARLEAIRLLLGISCIQKFKLYQIDVKSTFL 540

Query: 141 NRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGKGYSKGEI 200
           N YLNEEVYVAQPKGF+DSEHPKHVYKLNKALYGLKQA RAWYDRLTVYLRG+GYS+GEI
Sbjct: 541 NGYLNEEVYVAQPKGFVDSEHPKHVYKLNKALYGLKQALRAWYDRLTVYLRGRGYSRGEI 600

Query: 201 DKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQI 260
           DK LFIHRKSDQLLVAQIYVDDIIFG FP DL+NNFINIMQ+E EMSMVGELSCFLGLQI
Sbjct: 601 DKILFIHRKSDQLLVAQIYVDDIIFGGFPLDLINNFINIMQSEFEMSMVGELSCFLGLQI 660

Query: 261 KQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKLYKSIVGS 320
           KQKND I ISQEKYA+NMVKKFGL+QARNKRT  ATHVKLTK+TEGAEVDHKLY+SIVGS
Sbjct: 661 KQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAATHVKLTKDTEGAEVDHKLYRSIVGS 720

Query: 321 L 322
           L
Sbjct: 721 L 721

[Close]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL
Match: A0A5D3BJA9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G001000 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 6.4e-145
Identity = 257/285 (90.18%), Postives = 270/285 (94.74%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSK 60
           MQTRRKEKIDYMKMV DLCYISTFEPSTVD + RDEY LNAMQ+ELL+FKRNNVWTLV K
Sbjct: 642 MQTRRKEKIDYMKMVADLCYISTFEPSTVDFSLRDEYLLNAMQEELLQFKRNNVWTLVLK 701

Query: 61  PEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLL 120
           PEGVNVIGTKWVFKNKTDE+GCVTKNKARL+AQGYTQVEGIDFDETF+PVARLEAIRLLL
Sbjct: 702 PEGVNVIGTKWVFKNKTDEAGCVTKNKARLVAQGYTQVEGIDFDETFSPVARLEAIRLLL 761

Query: 121 GISCIQKFKLYQMDVKCAFLNRYLNEEVYVAQPKGFIDSEHPKHVYKLNKALYGLKQAPR 180
           GISCIQKFKLYQMDVK AFLN YLNEEVYVAQPK F+DSEH KHVYKLNKALYGLKQAPR
Sbjct: 762 GISCIQKFKLYQMDVKSAFLNGYLNEEVYVAQPKDFVDSEHSKHVYKLNKALYGLKQAPR 821

Query: 181 AWYDRLTVYLRGKGYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIM 240
           AWYDRLTVYLRGKGYS+GEIDKTLFIHRKSDQLLVAQIYVDDIIFG FPQ L+NNFI +M
Sbjct: 822 AWYDRLTVYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQVLVNNFIYVM 881

Query: 241 QTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKNMVKKFGLE 286
           Q+E EMSMVGELSCFLGLQIKQKNDDI ISQEKYA+NMVKKFG +
Sbjct: 882 QSEFEMSMVGELSCFLGLQIKQKNDDIFISQEKYARNMVKKFGYQ 926

[Close]

BLAST of Cmc03g0067921 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-50
Identity = 111/308 (36.04%), Postives = 171/308 (55.52%), Query Frame = 0


Query: 18  LCYISTFEPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLVSKPEGVNVIGTKWVFKNKT 77
           +C     EPST + A+    W  AM DE+   +  + W + + P     IG KWV+K K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 78  DESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRLLLGISCIQKFKLYQMDVKC 137
           +  G + + KARL+A+GYTQ EGIDF ETF+PV +L +++L+L IS I  F L+Q+D+  
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 138 AFLNRYLNEEVYVAQPKGFI----DSEHPKHVYKLNKALYGLKQAPRAWYDRLTVYLRGK 197
           AFLN  L+EE+Y+  P G+     DS  P  V  L K++YGLKQA R W+ + +V L G 
Sbjct: 198 AFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGF 257

Query: 198 GYSKGEIDKTLFIHRKSDQLLVAQIYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELS 257
           G+ +   D T F+   +   L   +YVDDII        ++   + +++  ++  +G L 
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 258 CFLGLQIKQKNDDILISQEKYAKNMVKKFGLEQARNKRTLVATHVKLTKNTEGAEVDHKL 317
            FLGL+I +    I I Q KYA +++ + GL   +     +   V  + ++ G  VD K 
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 318 YKSIVGSL 322
           Y+ ++G L
Sbjct: 378 YRRLIGRL 385

[Close]

BLAST of Cmc03g0067921 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 96.3 bits (238), Expect = 4.8e-20
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 1   MQTRRKEKIDYMKMVTDLCYISTF--EPSTVDSARRDEYWLNAMQDELLEFKRNNVWTLV 60
           M TR K  I+ +     L   +T   EP +V  A +D  W  AMQ+EL    RN  W LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61  SKPEGVNVIGTKWVFKNKTDESGCVTKNKARLLAQGYTQVEGIDFDETFAPVARLEAIRL 120
             P   N++G KWVFK K    G + + KARL+A+G+ Q EGI F ET++PV R   IR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

Query: 121 LLGIS 124
           +L ++
Sbjct: 121 ILNVA 125

[Close]

BLAST of Cmc03g0067921 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.4e-05
Identity = 33/105 (31.43%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 218 IYVDDIIFGEFPQDLLNNFINIMQTEIEMSMVGELSCFLGLQIKQKNDDILISQEKYAKN 277
           +YVDDI+       LLN  I  + +   M  +G +  FLG+QIK     + +SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 278 MVKKFGLEQARNKRTLVATHVKLTKNTEGAEV-DHKLYKSIVGSL 322
           ++   G+   +   T +   +KL  +   A+  D   ++SIVG+L
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGAL 107

The following BLAST results are available for this feature:

BLAST of Cmc03g0067921 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066164.1	3.3e-156	88.01	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [...	[more]
KAA0033021.1	2.5e-151	86.92	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK03438.1	2.5e-151	86.92	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053137.1	1.5e-148	86.38	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [...	[more]
TYJ98791.1	1.3e-144	90.18	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0067921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.7e-51	36.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.0e-50	35.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.8e-46	36.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.0e-43	34.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	6.8e-19	41.60	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0067921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXU0	1.6e-156	88.01	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G...	[more]
A0A5D3BWU5	1.2e-151	86.92	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G...	[more]
A0A5A7SU23	1.2e-151	86.92	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G...	[more]
A0A5D3BPB3	7.3e-149	86.38	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G...	[more]
A0A5D3BJA9	6.4e-145	90.18	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G...	[more]

BLAST of Cmc03g0067921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-50	36.04	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.8e-20	41.60	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	3.4e-05	31.43	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 52..292 e-value: 9.5E-71 score: 238.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 39..290
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 39..290
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 51..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0067921.1	Cmc03g0067921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding