Cmc03g0067331 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0067331
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 10060616 .. 10061089 (-)
RNA-Seq Expression	Cmc03g0067331
Synteny	Cmc03g0067331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGGTTGACGAATGCTCCAGCAGTGTTCATAGATTTGATGAACAAAGTGTTTAGGGAGTTCCTAGAAACTTTTGTGATTGTGTTCATTGACGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGTGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATATGGTTTCTAAAGTTGGTGCTTCTATGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGGAGAACTTTTCTTGTATAGCTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCCTGTGAGGACAGTTTTCAGAACCTTAAATAG

mRNA sequence

ATGTCCTTTGGGTTGACGAATGCTCCAGCAGTGTTCATAGATTTGATGAACAAAGTGTTTAGGGAGTTCCTAGAAACTTTTGTGATTGTGTTCATTGACGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGTGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATATGGTTTCTAAAGTTGGTGCTTCTATGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGGAGAACTTTTCTTGTATAGCTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCCTGTGAGGACAGTTTTCAGAACCTTAAATAG

Coding sequence (CDS)

ATGTCCTTTGGGTTGACGAATGCTCCAGCAGTGTTCATAGATTTGATGAACAAAGTGTTTAGGGAGTTCCTAGAAACTTTTGTGATTGTGTTCATTGACGATATTTTGATATATTCCAAGACAGAGGTCGAGCATGAGGAGCATTTACGTATGGTTCTAGAAACCCTTCGAGCTAATAAACTGTATGCAAAGTTCTCAAAATGTGTGTTTTGGTTGAAGCAGGTATCCTTTCTAGGCCATATGGTTTCTAAAGTTGGTGCTTCTATGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGGAGAACTTTTCTTGTATAGCTACTCCTCTTACTCAATTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCCTGTGAGGACAGTTTTCAGAACCTTAAATAG

Protein sequence

MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANKLYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK

Homology

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BLAST of Cmc03g0067331 vs. NCBI nr
Match: TYK07181.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGL NAPAVF+DLMNKVFREFL+TF+IVFIDDILIYSKTE EHEEHLRMVLETLRANK
Sbjct: 575 MSFGLMNAPAVFMDLMNKVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLETLRANK 634

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DP KIEAVTSWP+PSTVSEVRSFLGLAGYYR
Sbjct: 635 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYR 694

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPF WSKACEDSFQNLK
Sbjct: 695 RFVENFSLIATPLTQLTRKGAPFAWSKACEDSFQNLK 731

[Close]

BLAST of Cmc03g0067331 vs. NCBI nr
Match: KAA0046185.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1    MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
            MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NK
Sbjct: 970  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 1029

Query: 61   LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
            LYAKFSKC FWLKQVSFLGHMVSK G S+DPAKIEAVT W RPSTVSEVRSFLGLAGYYR
Sbjct: 1030 LYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1089

Query: 121  RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
            RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1090 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1126

[Close]

BLAST of Cmc03g0067331 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 144/157 (91.72%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DPAKIEAVTSW RPSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 229

[Close]

BLAST of Cmc03g0067331 vs. NCBI nr
Match: KAA0056200.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 3.1e-75
Identity = 142/157 (90.45%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSK E EHEEHLRMVL+TLR NK
Sbjct: 632 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLRMVLQTLRDNK 691

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DPAKIEAVT W RPSTVSEVRSFLGLAGYYR
Sbjct: 692 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 751

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFSCIATPLTQLTRKGAP+VWSKACEDSFQNLK
Sbjct: 752 RFVENFSCIATPLTQLTRKGAPYVWSKACEDSFQNLK 788

[Close]

BLAST of Cmc03g0067331 vs. NCBI nr
Match: KAA0065613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 3.1e-75
Identity = 143/157 (91.08%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGL NAPAVF+DLMNKVFREFL TF+IVFIDDILIYSKTE EHEEHLRMVLETLRANK
Sbjct: 73  MSFGLMNAPAVFMDLMNKVFREFLNTFLIVFIDDILIYSKTEAEHEEHLRMVLETLRANK 132

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DP KIEAVTSWP+PSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPF WSKACEDSFQNLK
Sbjct: 193 RFVENFSLIATPLTQLTRKGAPFAWSKACEDSFQNLK 229

[Close]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-26
Identity = 62/158 (39.24%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           M FGL NAPA F   MN + R  L    +V++DDI+++S +  EH + L +V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           L  +  KC F  ++ +FLGH+++  G   +P KIEA+  +P P+   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDS-FQNLK 158
           +F+ NF+ IA P+T+  +K      +    DS F+ LK
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

[Close]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-26
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           M FGL NAPA F   MN + R  L    +V++DDI+I+S +  EH   +++V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           L  +  KC F  K+ +FLGH+V+  G   +P K++A+ S+P P+   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVENFSCIATPLTQLTRK 140
           +F+ N++ IA P+T   +K
Sbjct: 453 KFIPNYADIAKPMTSCLKK 471

[Close]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           L     K  F   QV FLG++V+  G   DP K+ A++  P P++V E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVENFSCIATPLTQLTR 139
           +F+++++ +A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-24
Identity = 58/168 (34.52%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           + FGL NA ++F   ++ V RE +     V++DD++I+S+ E +H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           +     K  F+ + V +LG +VSK G   DP K++A+  +P P  V +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVENFSCIATPLTQLTR-----------KGAPFVWSKACEDSFQNLK 158
            F+++F+ IA P+T + +           K  P  +++   ++FQ L+
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 476

[Close]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           M +G++ APA F   +N +  E  E+ V+ ++DDILI+SK+E EH +H++ VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           L    +KC F   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           +F+   S +  PL  L +K   + W+     + +N+K
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL
Match: A0A5D3C5J7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00640 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.9e-76
Identity = 143/157 (91.08%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGL NAPAVF+DLMNKVFREFL+TF+IVFIDDILIYSKTE EHEEHLRMVLETLRANK
Sbjct: 575 MSFGLMNAPAVFMDLMNKVFREFLDTFLIVFIDDILIYSKTEAEHEEHLRMVLETLRANK 634

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DP KIEAVTSWP+PSTVSEVRSFLGLAGYYR
Sbjct: 635 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYR 694

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPF WSKACEDSFQNLK
Sbjct: 695 RFVENFSLIATPLTQLTRKGAPFAWSKACEDSFQNLK 731

[Close]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL
Match: A0A5A7TXM6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold376G00490 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1    MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
            MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NK
Sbjct: 970  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 1029

Query: 61   LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
            LYAKFSKC FWLKQVSFLGHMVSK G S+DPAKIEAVT W RPSTVSEVRSFLGLAGYYR
Sbjct: 1030 LYAKFSKCEFWLKQVSFLGHMVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1089

Query: 121  RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
            RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1090 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1126

[Close]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 144/157 (91.72%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSKTE EHEEHLRMVL+TLR NK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DPAKIEAVTSW RPSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 229

[Close]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL
Match: A0A5A7VBQ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00610 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 143/157 (91.08%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGL NAPAVF+DLMNKVFREFL TF+IVFIDDILIYSKTE EHEEHLRMVLETLRANK
Sbjct: 73  MSFGLMNAPAVFMDLMNKVFREFLNTFLIVFIDDILIYSKTEAEHEEHLRMVLETLRANK 132

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DP KIEAVTSWP+PSTVSEVRSFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFS IATPLTQLTRKGAPF WSKACEDSFQNLK
Sbjct: 193 RFVENFSLIATPLTQLTRKGAPFAWSKACEDSFQNLK 229

[Close]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL
Match: A0A5A7UM36 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00280 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 142/157 (90.45%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPAVFIDLMNKVFREFLETFVIVFIDDILIYSKTEVEHEEHLRMVLETLRANK 60
           MSFGLTNAPAVF+DLMN+VFREFL+TFVIVFIDDILIYSK E EHEEHLRMVL+TLR NK
Sbjct: 632 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKMEAEHEEHLRMVLQTLRDNK 691

Query: 61  LYAKFSKCVFWLKQVSFLGHMVSKVGASMDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR 120
           LYAKFSKC FWLKQVSFLGH+VSK G S+DPAKIEAVT W RPSTVSEVRSFLGLAGYYR
Sbjct: 692 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 751

Query: 121 RFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
           RFVENFSCIATPLTQLTRKGAP+VWSKACEDSFQNLK
Sbjct: 752 RFVENFSCIATPLTQLTRKGAPYVWSKACEDSFQNLK 788

[Close]

BLAST of Cmc03g0067331 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-22
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 48  HLRMVLETLRANKLYAKFSKCVFWLKQVSFLG--HMVSKVGASMDPAKIEAVTSWPRPST 107
           HL MVL+    ++ YA   KC F   Q+++LG  H++S  G S DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVRSFLGLAGYYRRFVENFSCIATPLTQLTRKGAPFVWSKACEDSFQNLK 158
            +E+R FLGL GYYRRFV+N+  I  PLT+L +K +   W++    +F+ LK
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of Cmc03g0067331 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07181.1	1.8e-75	91.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046185.1	2.4e-75	91.72	pol protein [Cucumis melo var. makuwa]	[more]
KAA0042119.1	2.4e-75	91.72	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056200.1	3.1e-75	90.45	pol protein [Cucumis melo var. makuwa]	[more]
KAA0065613.1	3.1e-75	91.08	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0067331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.1e-26	39.24	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	3.7e-26	41.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.6e-24	39.13	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	7.6e-24	34.52	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	1.1e-22	34.39	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc03g0067331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5J7	8.9e-76	91.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TXM6	1.2e-75	91.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7TLA3	1.2e-75	91.72	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7VBQ2	1.5e-75	91.08	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00610 PE=...	[more]
A0A5A7UM36	1.5e-75	90.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of Cmc03g0067331 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-22	44.64	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..157 e-value: 7.4E-26 score: 92.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..86 e-value: 5.7E-33 score: 115.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.2E-16 score: 60.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.388092
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..157
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..157
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 5.89433E-39 score: 128.482
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0067331.1	Cmc03g0067331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding