Cmc03g0067311 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0067311
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr03: 10026106 .. 10026822 (+)
RNA-Seq ExpressionCmc03g0067311
SyntenyCmc03g0067311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGGTGCTCAGAGTAACGATCCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGAGGGGTTCTCCATATCCTCTGATGGTGGACTTGTGTTTGAGGGACGCTTATGTGTGCCGTCAAACAGTGCGATTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACGCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACCGCTTTACATCCACAGACTGACGGTCAGACTTAG

mRNA sequence

ATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGGTGCTCAGAGTAACGATCCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGAGGGGTTCTCCATATCCTCTGATGGTGGACTTGTGTTTGAGGGACGCTTATGTGTGCCGTCAAACAGTGCGATTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACGCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACCGCTTTACATCCACAGACTGACGGTCAGACTTAG

Coding sequence (CDS)

ATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGGTGCTCAGAGTAACGATCCTTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGAGGGGTTCTCCATATCCTCTGATGGTGGACTTGTGTTTGAGGGACGCTTATGTGTGCCGTCAAACAGTGCGATTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTATCCATGGATTTCATTACAGGACTGCCGAGAACGCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACGGCTATGGGAACGAGGTTAGACTTTAGTACCGCTTTACATCCACAGACTGACGGTCAGACTTAG

Protein sequence

MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSNSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT
Homology
[Close]
BLAST of Cmc03g0067311 vs. NCBI nr
Match: KAA0047038.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.0e-130
Identity = 233/238 (97.90%), Postives = 235/238 (98.74%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFS+SSDGGLVFE RLCVPS+
Sbjct: 955  MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSLSSDGGLVFERRLCVPSD 1014

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWW NMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1015 SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWCNMKREVAEFVSRCLVCQQVKAPRQ 1074

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS
Sbjct: 1075 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 1134

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1135 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1192

[Close]
BLAST of Cmc03g0067311 vs. NCBI nr
Match: KAA0040188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 470.7 bits (1210), Expect = 7.5e-129
Identity = 231/238 (97.06%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFE RLCVPS+
Sbjct: 1140 MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFERRLCVPSD 1199

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            SAIK ELLSEAHSSPF MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1200 SAIKIELLSEAHSSPFFMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 1259

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY AS
Sbjct: 1260 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIAS 1319

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTS+FWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1320 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSQFWKGLQTAMGTRLDFSTAFHPQTDGQT 1377

[Close]
BLAST of Cmc03g0067311 vs. NCBI nr
Match: KAA0053368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.0 bits (1203), Expect = 4.8e-128
Identity = 230/238 (96.64%), Postives = 231/238 (97.06%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQ TLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGL FE RLCVPS+
Sbjct: 1203 MQLAQLTVQSTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLAFERRLCVPSD 1262

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            S IKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1263 SVIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 1322

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKST TAS
Sbjct: 1323 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTCTAS 1382

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1383 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1440

[Close]
BLAST of Cmc03g0067311 vs. NCBI nr
Match: KAA0062835.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 467.2 bits (1201), Expect = 8.3e-128
Identity = 228/238 (95.80%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1   MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
           MQLAQLTVQPTLRQRII AQSNDPYLVEKRGLAEAGQA  FS+SSDGGL+FE RLCVPS+
Sbjct: 272 MQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD 331

Query: 61  SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
           SA+KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 332 SAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 391

Query: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
           KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+
Sbjct: 392 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAN 451

Query: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
           KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 452 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 509

[Close]
BLAST of Cmc03g0067311 vs. NCBI nr
Match: KAA0025425.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127
Identity = 227/238 (95.38%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1   MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
           MQLAQLTVQPTLRQRII AQSNDPYLVEKRGLAEAGQA  FS+SSDGGL+FE RLCVPS+
Sbjct: 1   MQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSD 60

Query: 61  SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
           SA+KTELL+EAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQ
Sbjct: 61  SAVKTELLAEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ 120

Query: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
           KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS
Sbjct: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180

Query: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
           KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 238

[Close]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 71/193 (36.79%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 46   DGGLVFEGRLCVPSNSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 105
            D  + ++ RL VP         L   H+  F  H G T     +  +Y+W  ++  + ++
Sbjct: 1080 DEMIYYQDRLVVPIKQQNAVMRLYHDHTL-FGGHFGVTVTLAKISPIYYWPKLQHSIIQY 1139

Query: 106  VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 165
            +  C+ CQ +K+ R +  GLLQPL I E +W ++SMDF+TGLP T     +I VVVDR +
Sbjct: 1140 IRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFS 1199

Query: 166  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 225
            K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +  
Sbjct: 1200 KRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKST 1259

Query: 226  FSTALHPQTDGQT 239
             S+A HPQTDGQ+
Sbjct: 1260 MSSANHPQTDGQS 1271

[Close]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 71/193 (36.79%), Postives = 106/193 (54.92%), Query Frame = 0 

Query: 46   DGGLVFEGRLCVPSNSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 105
            D  + ++ RL VP         L   H+  F  H G T     +  +Y+W  ++  + ++
Sbjct: 1106 DEMIYYQDRLVVPIKQQNAVMRLYHDHTL-FGGHFGVTVTLAKISPIYYWPKLQHSIIQY 1165

Query: 106  VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 165
            +  C+ CQ +K+ R +  GLLQPL I E +W ++SMDF+TGLP T     +I VVVDR +
Sbjct: 1166 IRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFS 1225

Query: 166  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 225
            K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +  
Sbjct: 1226 KRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKST 1285

Query: 226  FSTALHPQTDGQT 239
             S+A HPQTDGQ+
Sbjct: 1286 MSSANHPQTDGQS 1297

[Close]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 70/235 (29.79%), Postives = 124/235 (52.77%), Query Frame = 0 

Query: 5    QLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLV-FEGRLCVPSNSAI 64
            Q+++    + +++   +ND  L+      +    E   +  DG L+  + ++ +P+++ +
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL-KDGLLINSKDQILLPNDTQL 912

Query: 65   KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPA 124
               ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP 
Sbjct: 913  TRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPY 972

Query: 125  GLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA 184
            G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Sbjct: 973  GPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTA 1032

Query: 185  QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            +++   ++   G P  I++D D  FTS+ WK         + FS    PQTDGQT
Sbjct: 1033 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085

[Close]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 70/235 (29.79%), Postives = 124/235 (52.77%), Query Frame = 0 

Query: 5    QLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLV-FEGRLCVPSNSAI 64
            Q+++    + +++   +ND  L+      +    E   +  DG L+  + ++ +P+++ +
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL-KDGLLINSKDQILLPNDTQL 912

Query: 65   KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPA 124
               ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP 
Sbjct: 913  TRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPY 972

Query: 125  GLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA 184
            G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Sbjct: 973  GPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTA 1032

Query: 185  QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            +++   ++   G P  I++D D  FTS+ WK         + FS    PQTDGQT
Sbjct: 1033 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085

[Close]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 70/235 (29.79%), Postives = 124/235 (52.77%), Query Frame = 0 

Query: 5    QLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLV-FEGRLCVPSNSAI 64
            Q+++    + +++   +ND  L+      +    E   +  DG L+  + ++ +P+++ +
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQL-KDGLLINSKDQILLPNDTQL 912

Query: 65   KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPA 124
               ++ + H     +HPG   +   + R + W+ +++++ E+V  C  CQ  K+   KP 
Sbjct: 913  TRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPY 972

Query: 125  GLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA 184
            G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Sbjct: 973  GPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTA 1032

Query: 185  QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            +++   ++   G P  I++D D  FTS+ WK         + FS    PQTDGQT
Sbjct: 1033 RMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQT 1085

[Close]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match: A0A5A7TVX7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00230 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 233/238 (97.90%), Postives = 235/238 (98.74%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFS+SSDGGLVFE RLCVPS+
Sbjct: 955  MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSLSSDGGLVFERRLCVPSD 1014

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWW NMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1015 SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWCNMKREVAEFVSRCLVCQQVKAPRQ 1074

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS
Sbjct: 1075 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 1134

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1135 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1192

[Close]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match: A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.6e-129
Identity = 231/238 (97.06%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFE RLCVPS+
Sbjct: 1140 MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFERRLCVPSD 1199

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            SAIK ELLSEAHSSPF MHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1200 SAIKIELLSEAHSSPFFMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 1259

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY AS
Sbjct: 1260 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIAS 1319

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTS+FWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1320 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSQFWKGLQTAMGTRLDFSTAFHPQTDGQT 1377

[Close]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match: A0A5A7UE75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00240 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.3e-128
Identity = 230/238 (96.64%), Postives = 231/238 (97.06%), Query Frame = 0 

Query: 1    MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
            MQLAQLTVQ TLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGL FE RLCVPS+
Sbjct: 1203 MQLAQLTVQSTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLAFERRLCVPSD 1262

Query: 61   SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
            S IKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 1263 SVIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 1322

Query: 121  KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
            KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS HFVPGKST TAS
Sbjct: 1323 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSTHFVPGKSTCTAS 1382

Query: 181  KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
            KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 1383 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 1440

[Close]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match: A0A5A7VAA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold100G00010 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.0e-128
Identity = 228/238 (95.80%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1   MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
           MQLAQLTVQPTLRQRII AQSNDPYLVEKRGLAEAGQA  FS+SSDGGL+FE RLCVPS+
Sbjct: 272 MQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSD 331

Query: 61  SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
           SA+KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ
Sbjct: 332 SAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 391

Query: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
           KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA+
Sbjct: 392 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAN 451

Query: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
           KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 452 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 509

[Close]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match: A0A5A7SLT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 6.8e-128
Identity = 227/238 (95.38%), Postives = 233/238 (97.90%), Query Frame = 0 

Query: 1   MQLAQLTVQPTLRQRIIGAQSNDPYLVEKRGLAEAGQAEGFSISSDGGLVFEGRLCVPSN 60
           MQLAQLTVQPTLRQRII AQSNDPYLVEKRGLAEAGQA  FS+SSDGGL+FE RLCVPS+
Sbjct: 1   MQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSD 60

Query: 61  SAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQ 120
           SA+KTELL+EAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQ
Sbjct: 61  SAVKTELLAEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ 120

Query: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180
           KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS
Sbjct: 121 KPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTAS 180

Query: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTALHPQTDGQT 239
           KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTA HPQTDGQT
Sbjct: 181 KWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQT 238

The following BLAST results are available for this feature:
BLAST of Cmc03g0067311 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047038.13.0e-13097.90ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0040188.17.5e-12997.06pol protein [Cucumis melo var. makuwa][more]
KAA0053368.14.8e-12896.64pol protein [Cucumis melo var. makuwa][more]
KAA0062835.18.3e-12895.80pol protein [Cucumis melo var. makuwa][more]
KAA0025425.11.4e-12795.38pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc03g0067311 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q993151.5e-3136.79Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.5e-3136.79Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q9UR071.1e-2929.79Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT411.1e-2929.79Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT341.1e-2929.79Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVX71.5e-13097.90Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
A0A5A7TB423.6e-12997.06Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11... [more]
A0A5A7UE752.3e-12896.64Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold42... [more]
A0A5A7VAA94.0e-12895.80Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold100G00010 PE... [more]
A0A5A7SLT06.8e-12895.38Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE... [more]
BLAST of Cmc03g0067311 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 125..238
e-value: 6.4E-25
score: 89.6
NoneNo IPR availableGENE3D1.10.340.70coord: 26..116
e-value: 1.7E-18
score: 68.6
NoneNo IPR availablePANTHERPTHR45835YALI0A06105Pcoord: 54..238
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 62..117
e-value: 7.7E-18
score: 64.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 128..238
score: 12.917479
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 129..237

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0067311.1Cmc03g0067311.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0043227 membrane-bounded organelle
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding