Cmc03g0066591 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0066591
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr03: 8682187 .. 8682693 (+)
RNA-Seq Expression	Cmc03g0066591
Synteny	Cmc03g0066591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCAATGTGTGCTACACATCTTCACTAGAACCGACCATGGTCTCTGCAGTACTTTCTGACGAACACTGGATCTTGACTATGCAGGAAGAGCTACTCCAGTTTGAAAGAAACCAAATATGGGAATTAGTGCCAAAGCCACCTTATGCTAACATAATTGGTACAAAATGGATCTTTAAAAACAAAACGGATGAAGAAGGCAGAGTCATCCGTAATAAAGCTAGACTAGTTGCTCAAGGGTATTTTCAAATAGAAGGGCTGGATTTTGGAGAAACATTTTTCCCAGTTGCCAGATTAGAAGTCATCCGACTACTGCTAAGCTATGCATATTTTCGGAGGTTCAAATTGTTCCAAATGGATGTAAAAAGTGCGTTCCTAAATGGGTACTTATCTGAGGAAGTATATGTGGCCCAGCCAAAAGGATTTGTTGATCCAGTACATCAGGATCATGTTTACAAACTTCAAAAGGCACTCTATGGACTTAAACAAGCTCCTAGAGCTTAG

mRNA sequence

ATGGTTGCCAATGTGTGCTACACATCTTCACTAGAACCGACCATGGTCTCTGCAGTACTTTCTGACGAACACTGGATCTTGACTATGCAGGAAGAGCTACTCCAGTTTGAAAGAAACCAAATATGGGAATTAGTGCCAAAGCCACCTTATGCTAACATAATTGGTACAAAATGGATCTTTAAAAACAAAACGGATGAAGAAGGCAGAGTCATCCGTAATAAAGCTAGACTAGTTGCTCAAGGGTATTTTCAAATAGAAGGGCTGGATTTTGGAGAAACATTTTTCCCAGTTGCCAGATTAGAAGTCATCCGACTACTGCTAAGCTATGCATATTTTCGGAGGTTCAAATTGTTCCAAATGGATGTAAAAAGTGCGTTCCTAAATGGGTACTTATCTGAGGAAGTATATGTGGCCCAGCCAAAAGGATTTGTTGATCCAGTACATCAGGATCATGTTTACAAACTTCAAAAGGCACTCTATGGACTTAAACAAGCTCCTAGAGCTTAG

Coding sequence (CDS)

ATGGTTGCCAATGTGTGCTACACATCTTCACTAGAACCGACCATGGTCTCTGCAGTACTTTCTGACGAACACTGGATCTTGACTATGCAGGAAGAGCTACTCCAGTTTGAAAGAAACCAAATATGGGAATTAGTGCCAAAGCCACCTTATGCTAACATAATTGGTACAAAATGGATCTTTAAAAACAAAACGGATGAAGAAGGCAGAGTCATCCGTAATAAAGCTAGACTAGTTGCTCAAGGGTATTTTCAAATAGAAGGGCTGGATTTTGGAGAAACATTTTTCCCAGTTGCCAGATTAGAAGTCATCCGACTACTGCTAAGCTATGCATATTTTCGGAGGTTCAAATTGTTCCAAATGGATGTAAAAAGTGCGTTCCTAAATGGGTACTTATCTGAGGAAGTATATGTGGCCCAGCCAAAAGGATTTGTTGATCCAGTACATCAGGATCATGTTTACAAACTTCAAAAGGCACTCTATGGACTTAAACAAGCTCCTAGAGCTTAG

Protein sequence

MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA

Homology

[Close]

BLAST of Cmc03g0066591 vs. NCBI nr
Match: KAA0059939.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24885.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 3.1e-89
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF
Sbjct: 114 MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 173

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNKTDEEGRVIRNKARLVAQ YFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM
Sbjct: 174 KNKTDEEGRVIRNKARLVAQRYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 233

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA
Sbjct: 234 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 281

[Close]

BLAST of Cmc03g0066591 vs. NCBI nr
Match: KAA0059225.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 154/168 (91.67%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1    MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
            MVANVCYTS LEPT VSA LSDEHWILT+QEELLQFERNQ+WELVPKPPYANIIGTKWIF
Sbjct: 977  MVANVCYTSLLEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIF 1036

Query: 61   KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
            KNKTDEEGRVIRNKARLVAQGY QIEGLDFGETF PVARLE IRLLLSYA F RFKLFQM
Sbjct: 1037 KNKTDEEGRVIRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQM 1096

Query: 121  DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
            DVKSAFLNGYL EEVYVAQPKGFVDPVH+DHVYKL+KALY LKQAPRA
Sbjct: 1097 DVKSAFLNGYLCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRA 1144

[Close]

BLAST of Cmc03g0066591 vs. NCBI nr
Match: KAA0035460.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANV YTS++EPT V+A L+DEHWIL +QEELLQFERNQ+W LVPKPP+ NIIGTKWIF
Sbjct: 36  MVANVYYTSTMEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIF 95

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GR+IRNK RLVAQGY QI+GLDFGETF P ARLE IRL+LS+  FR FKLFQM
Sbjct: 96  KNKIDEQGRLIRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQM 155

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH DHVYKL+KALYGLKQAPRA
Sbjct: 156 DVKSVFLNGYLSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRA 203

[Close]

BLAST of Cmc03g0066591 vs. NCBI nr
Match: TYK31065.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANV YTS++EPT V+A L+DEHWIL +QEELLQFERNQ+W LVPKPP+ NIIGTKWIF
Sbjct: 36  MVANVYYTSTMEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIF 95

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GR+IRNK RLVAQGY QI+GLDFGETF P ARLE IRL+LS+  FR FKLFQM
Sbjct: 96  KNKIDEQGRLIRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQM 155

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH DHVYKL+KALYGLKQAPRA
Sbjct: 156 DVKSVFLNGYLSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRA 203

[Close]

BLAST of Cmc03g0066591 vs. NCBI nr
Match: KAA0033149.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK17085.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 5.9e-72
Identity = 141/168 (83.93%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANVCYTSSLE   VS  ++DEHWIL MQEELLQFERNQ+WELVPKPP+ANIIGT WIF
Sbjct: 284 MVANVCYTSSLESITVSVAVTDEHWILAMQEELLQFERNQVWELVPKPPHANIIGTNWIF 343

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GRVIRNKARLVAQ Y QIEGLDFGETF  V RLE IR LLSYA FRRFKLFQM
Sbjct: 344 KNKADEQGRVIRNKARLVAQRYSQIEGLDFGETFASVPRLEAIRPLLSYACFRRFKLFQM 403

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH D VYKL+KALYGLKQA RA
Sbjct: 404 DVKSTFLNGYLSEEVYVAQPKGFVDLVHHDQVYKLRKALYGLKQAFRA 451

[Close]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.7e-34
Identity = 76/165 (46.06%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 5    VCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPP-YANIIGTKWIFKNK 64
            V   +  EP      L DE W   M  E+     N  W+LVP PP +  I+G +WIF  K
Sbjct: 948  VSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKK 1007

Query: 65   TDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMDVK 124
             + +G + R KARLVA+GY Q  GLD+ ETF PV +   IR++L  A  R + + Q+DV 
Sbjct: 1008 YNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVN 1067

Query: 125  SAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
            +AFL G L+++VY++QP GF+D    ++V KL+KALYGLKQAPRA
Sbjct: 1068 NAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRA 1112

[Close]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-33
Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 7    YTSSL----EPTMVSAVLSDEHWILTMQEELLQFERNQIWELV-PKPPYANIIGTKWIFK 66
            Y +SL    EP      + D+ W   M  E+     N  W+LV P PP   I+G +WIF 
Sbjct: 929  YATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFT 988

Query: 67   NKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMD 126
             K + +G + R KARLVA+GY Q  GLD+ ETF PV +   IR++L  A  R + + Q+D
Sbjct: 989  KKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLD 1048

Query: 127  VKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
            V +AFL G L++EVY++QP GFVD    D+V +L+KA+YGLKQAPRA
Sbjct: 1049 VNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRA 1095

[Close]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-27
Identity = 69/166 (41.57%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 5   VCYTSSLEPTMVSAVLS---DEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFK 64
           V  +   EP  +  VLS       +  MQEE+   ++N  ++LV  P     +  KW+FK
Sbjct: 803 VLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFK 862

Query: 65  NKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMD 124
            K D + +++R KARLV +G+ Q +G+DF E F PV ++  IR +LS A     ++ Q+D
Sbjct: 863 LKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLD 922

Query: 125 VKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPR 168
           VK+AFL+G L EE+Y+ QP+GF     +  V KL K+LYGLKQAPR
Sbjct: 923 VKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPR 968

[Close]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 25   WILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARLVAQGYFQ 84
            W   +  EL   + N  W +  +P   NI+ ++W+F  K +E G  IR KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 85   IEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFV 144
               +D+ ETF PVAR+   R +LS       K+ QMDVK+AFLNG L EE+Y+  P+G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI- 1025

Query: 145  DPVHQDHVYKLQKALYGLKQAPR 168
               + D+V KL KA+YGLKQA R
Sbjct: 1026 -SCNSDNVCKLNKAIYGLKQAAR 1046

[Close]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-18
Identity = 49/103 (47.57%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 8   TSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFKNKTDEE 67
           T   EP  V   L D  W   MQEEL    RN+ W LVP P   NI+G KW+FK K   +
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 68  GRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYA 111
           G + R KARLVA+G+ Q EG+ F ET+ PV R   IR +L+ A
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL
Match: A0A5A7V293 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001570 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF
Sbjct: 114 MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 173

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNKTDEEGRVIRNKARLVAQ YFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM
Sbjct: 174 KNKTDEEGRVIRNKARLVAQRYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 233

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA
Sbjct: 234 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 281

[Close]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 154/168 (91.67%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 1    MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
            MVANVCYTS LEPT VSA LSDEHWILT+QEELLQFERNQ+WELVPKPPYANIIGTKWIF
Sbjct: 977  MVANVCYTSLLEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIF 1036

Query: 61   KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
            KNKTDEEGRVIRNKARLVAQGY QIEGLDFGETF PVARLE IRLLLSYA F RFKLFQM
Sbjct: 1037 KNKTDEEGRVIRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQM 1096

Query: 121  DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
            DVKSAFLNGYL EEVYVAQPKGFVDPVH+DHVYKL+KALY LKQAPRA
Sbjct: 1097 DVKSAFLNGYLCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRA 1144

[Close]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL
Match: A0A5A7SWP6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001070 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANV YTS++EPT V+A L+DEHWIL +QEELLQFERNQ+W LVPKPP+ NIIGTKWIF
Sbjct: 36  MVANVYYTSTMEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIF 95

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GR+IRNK RLVAQGY QI+GLDFGETF P ARLE IRL+LS+  FR FKLFQM
Sbjct: 96  KNKIDEQGRLIRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQM 155

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH DHVYKL+KALYGLKQAPRA
Sbjct: 156 DVKSVFLNGYLSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRA 203

[Close]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL
Match: A0A5D3E6X3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003230 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANV YTS++EPT V+A L+DEHWIL +QEELLQFERNQ+W LVPKPP+ NIIGTKWIF
Sbjct: 36  MVANVYYTSTMEPTTVAAALTDEHWILAIQEELLQFERNQVWNLVPKPPHVNIIGTKWIF 95

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GR+IRNK RLVAQGY QI+GLDFGETF P ARLE IRL+LS+  FR FKLFQM
Sbjct: 96  KNKIDEQGRLIRNKTRLVAQGYSQIKGLDFGETFAPTARLEAIRLILSFTCFRGFKLFQM 155

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH DHVYKL+KALYGLKQAPRA
Sbjct: 156 DVKSVFLNGYLSEEVYVAQPKGFVDHVHHDHVYKLRKALYGLKQAPRA 203

[Close]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL
Match: A0A5D3CZY5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00130 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 141/168 (83.93%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 60
           MVANVCYTSSLE   VS  ++DEHWIL MQEELLQFERNQ+WELVPKPP+ANIIGT WIF
Sbjct: 284 MVANVCYTSSLESITVSVAVTDEHWILAMQEELLQFERNQVWELVPKPPHANIIGTNWIF 343

Query: 61  KNKTDEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 120
           KNK DE+GRVIRNKARLVAQ Y QIEGLDFGETF  V RLE IR LLSYA FRRFKLFQM
Sbjct: 344 KNKADEQGRVIRNKARLVAQRYSQIEGLDFGETFASVPRLEAIRPLLSYACFRRFKLFQM 403

Query: 121 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHVYKLQKALYGLKQAPRA 169
           DVKS FLNGYLSEEVYVAQPKGFVD VH D VYKL+KALYGLKQA RA
Sbjct: 404 DVKSTFLNGYLSEEVYVAQPKGFVDLVHHDQVYKLRKALYGLKQAFRA 451

[Close]

BLAST of Cmc03g0066591 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-29
Identity = 67/167 (40.12%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 5   VCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFKNKT 64
           VC   + EP+  +       W   M +E+   E    WE+   PP    IG KW++K K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 65  DEEGRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQMDVKS 124
           + +G + R KARLVA+GY Q EG+DF ETF PV +L  ++L+L+ +    F L Q+D+ +
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 125 AFLNGYLSEEVYVAQPKGFV----DPVHQDHVYKLQKALYGLKQAPR 168
           AFLNG L EE+Y+  P G+     D +  + V  L+K++YGLKQA R
Sbjct: 198 AFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASR 244

[Close]

BLAST of Cmc03g0066591 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19
Identity = 49/103 (47.57%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 8   TSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIFKNKTDEE 67
           T   EP  V   L D  W   MQEEL    RN+ W LVP P   NI+G KW+FK K   +
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 68  GRVIRNKARLVAQGYFQIEGLDFGETFFPVARLEVIRLLLSYA 111
           G + R KARLVA+G+ Q EG+ F ET+ PV R   IR +L+ A
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc03g0066591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059939.1	3.1e-89	99.40	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24885.1 gag-pol polyprotein [...	[more]
KAA0059225.1	4.1e-81	91.67	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035460.1	5.4e-73	81.55	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK31065.1	5.4e-73	81.55	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033149.1	5.9e-72	83.93	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK17085.1 gag-pol polyprotein [...	[more]

BLAST of Cmc03g0066591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.7e-34	46.06	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.5e-33	46.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	6.0e-27	41.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-26	44.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	2.3e-18	47.57	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0066591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V293	1.5e-89	99.40	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G...	[more]
A0A5A7V046	2.0e-81	91.67	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G...	[more]
A0A5A7SWP6	2.6e-73	81.55	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G...	[more]
A0A5D3E6X3	2.6e-73	81.55	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]
A0A5D3CZY5	2.9e-72	83.93	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032...	[more]

BLAST of Cmc03g0066591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.0e-29	40.12	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.6e-19	47.57	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 39..167 e-value: 1.8E-41 score: 142.3
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 28..168
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 28..168
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 38..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0066591.1	Cmc03g0066591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding