Cmc03g0066331 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0066331
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 8280751 .. 8281173 (-)
RNA-Seq Expression	Cmc03g0066331
Synteny	Cmc03g0066331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATTTTTAGAACAAACATGGAGTTGATAATTGATATTAAGTTGTTTCTCTCATCACACTTTGAAATGATAGACCTAAGAGAAGCAGACGTAATCTTTGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCCCTGTGTCAATCTCACTACGTGGAGAAAATACTAAAGAAATTTGATTCCTTTGATGTTTCTCCAGTAAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATGAAGGAGATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATCTAATGAATTATACTAGACTTGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACATAATCCTGATAGATACCACTGGAATGCTTTACGCCATTTATTGAGATATGTTAAAGGATGA

mRNA sequence

ATGTTAATTTTTAGAACAAACATGGAGTTGATAATTGATATTAAGTTGTTTCTCTCATCACACTTTGAAATGATAGACCTAAGAGAAGCAGACGTAATCTTTGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCCCTGTGTCAATCTCACTACGTGGAGAAAATACTAAAGAAATTTGATTCCTTTGATGTTTCTCCAGTAAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATGAAGGAGATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATCTAATGAATTATACTAGACTTGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACATAATCCTGATAGATACCACTGGAATGCTTTACGCCATTTATTGAGATATGTTAAAGGATGA

Coding sequence (CDS)

ATGTTAATTTTTAGAACAAACATGGAGTTGATAATTGATATTAAGTTGTTTCTCTCATCACACTTTGAAATGATAGACCTAAGAGAAGCAGACGTAATCTTTGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCCCTGTGTCAATCTCACTACGTGGAGAAAATACTAAAGAAATTTGATTCCTTTGATGTTTCTCCAGTAAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATGAAGGAGATAGTGTGTCTCAACCTGAATATGCAAAGATCATAGGTAGTGTGATGTATCTAATGAATTATACTAGACTTGATATTGCATATGTTGTCAGTAGATTGAGTAGATATACACATAATCCTGATAGATACCACTGGAATGCTTTACGCCATTTATTGAGATATGTTAAAGGATGA

Protein sequence

MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG

Homology

[Close]

BLAST of Cmc03g0066331 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 8.4e-64
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1    MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKF 60
            MLIF TNMELI D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKF
Sbjct: 1034 MLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF 1093

Query: 61   DSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYT 120
            DSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTR DIAY VSRLSRYT
Sbjct: 1094 DSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 1153

Query: 121  HNPDRYHWNALRHLLRYVKG 141
            HNP+RYHW+ALRHLLRY+KG
Sbjct: 1154 HNPNRYHWDALRHLLRYLKG 1173

[Close]

BLAST of Cmc03g0066331 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 8   MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP 67
           MEL+ D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 68  VRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYH 127
           VRTPFDASKHL KN+GDSVSQPEYAKIIGSVMYLMNYTR DIAY VSRLSRYTHNPDRYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 128 WNALRHLLRYVKG 141
           W+ LRHLLRY+KG
Sbjct: 121 WDVLRHLLRYLKG 133

[Close]

BLAST of Cmc03g0066331 vs. NCBI nr
Match: KAA0045258.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 18  LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR-------- 77
           + SHFEM DL EAD+I GVKIRKNK+S+SLCQSHYVEKILKKFDSFDVSPVR        
Sbjct: 730 IRSHFEMKDLGEADIILGVKIRKNKSSMSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 789

Query: 78  -TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHW 137
            TPFDASKHLKKN+GDSVSQP+YAKIIGSVMYLMNYTRLDIAY VSRLSRYTHNPDRYHW
Sbjct: 790 LTPFDASKHLKKNKGDSVSQPKYAKIIGSVMYLMNYTRLDIAYAVSRLSRYTHNPDRYHW 849

Query: 138 NALRHLLRYVKG 141
           +ALRHLLRY+KG
Sbjct: 850 DALRHLLRYLKG 861

[Close]

BLAST of Cmc03g0066331 vs. NCBI nr
Match: TYK04656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 24  MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEG 83
           M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+G
Sbjct: 1   MEDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 84  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG 141
           DSVSQPEYAKIIGSVMYLMNYTRLDIAY VSRLSRYT NPDRYHW+ALRHLLRY+KG
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRLDIAYAVSRLSRYTQNPDRYHWDALRHLLRYLKG 117

[Close]

BLAST of Cmc03g0066331 vs. NCBI nr
Match: KAA0035900.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19055.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.6e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 24  MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEG 83
           M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFD SKHLKKN+G
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDTSKHLKKNKG 60

Query: 84  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG 141
           DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRY W+ALRHLLRY+KG
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYLWDALRHLLRYLKG 117

[Close]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-18
Identity = 56/149 (37.58%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 1    MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTS--LSLCQSHYVEKILK 60
            MLI   +  LI  +K  LS  F+M DL  A  I G+KI + +TS  L L Q  Y+E++L+
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   KFDSFDVSPVRTPFDASKHLKK-------NEGDSVSQPEYAKIIGSVMYLMNYTRLDIAY 120
            +F+  +  PV TP      L K        E  ++++  Y+  +GS+MY M  TR DIA+
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 121  VVSRLSRYTHNPDRYHWNALRHLLRYVKG 141
             V  +SR+  NP + HW A++ +LRY++G
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRG 1160

[Close]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-15
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 18   LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 77
            LS  F + +  +     G++ ++    L L Q  Y   +L + +     PV TP   S  
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 78   LKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLR 137
            L  + G  +  P EY  I+GS+ YL  +TR D++Y V+RLS+Y H P   HWNAL+ +LR
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLR 1273

Query: 138  YVKG 141
            Y+ G
Sbjct: 1274 YLAG 1276

[Close]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 18   LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 77
            LS  F + D  E     G++ ++  T L L Q  Y+  +L + +     PV TP   S  
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230

Query: 78   LKKNEGDSVSQP-EYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLR 137
            L    G  ++ P EY  I+GS+ YL  +TR DI+Y V+RLS++ H P   H  AL+ +LR
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILR 1290

Query: 138  YVKG 141
            Y+ G
Sbjct: 1291 YLAG 1293

[Close]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-13
Identity = 45/140 (32.14%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1    MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKF 60
            ++I   +M  + + K +L   F M DL E     G++I   +  + L QS YV+KIL KF
Sbjct: 1091 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKF 1150

Query: 61   DSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYT 120
            +  + + V TP  +  + +    D         +IG +MY+M  TR D+   V+ LSRY+
Sbjct: 1151 NMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYS 1210

Query: 121  HNPDRYHWNALRHLLRYVKG 141
               +   W  L+ +LRY+KG
Sbjct: 1211 SKNNSELWQNLKRVLRYLKG 1230

[Close]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-11
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 18  LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 77
           LSS F M DL       G++I+ + + L L Q+ Y E+IL      D  P+ TP     +
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 78  LKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRY 137
              +        ++  I+G++ YL   TR DI+Y V+ + +  H P    ++ L+ +LRY
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 138 VKG 141
           VKG
Sbjct: 147 VKG 148

[Close]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.1e-64
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1    MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKF 60
            MLIF TNMELI D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKF
Sbjct: 1034 MLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKF 1093

Query: 61   DSFDVSPVRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYT 120
            DSFDVSPVRTPFDASKHLKKN+GDSVSQPEYAKIIGSVMYLMNYTR DIAY VSRLSRYT
Sbjct: 1094 DSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYT 1153

Query: 121  HNPDRYHWNALRHLLRYVKG 141
            HNP+RYHW+ALRHLLRY+KG
Sbjct: 1154 HNPNRYHWDALRHLLRYLKG 1173

[Close]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 8   MELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSP 67
           MEL+ D K FLSSHFEM DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 68  VRTPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYH 127
           VRTPFDASKHL KN+GDSVSQPEYAKIIGSVMYLMNYTR DIAY VSRLSRYTHNPDRYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 128 WNALRHLLRYVKG 141
           W+ LRHLLRY+KG
Sbjct: 121 WDVLRHLLRYLKG 133

[Close]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL
Match: A0A5A7TQW7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00950 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.9e-55
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 18  LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVR-------- 77
           + SHFEM DL EAD+I GVKIRKNK+S+SLCQSHYVEKILKKFDSFDVSPVR        
Sbjct: 730 IRSHFEMKDLGEADIILGVKIRKNKSSMSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 789

Query: 78  -TPFDASKHLKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHW 137
            TPFDASKHLKKN+GDSVSQP+YAKIIGSVMYLMNYTRLDIAY VSRLSRYTHNPDRYHW
Sbjct: 790 LTPFDASKHLKKNKGDSVSQPKYAKIIGSVMYLMNYTRLDIAYAVSRLSRYTHNPDRYHW 849

Query: 138 NALRHLLRYVKG 141
           +ALRHLLRY+KG
Sbjct: 850 DALRHLLRYLKG 861

[Close]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL
Match: A0A5D3C2K6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00090 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.7e-55
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 24  MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEG 83
           M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKN+G
Sbjct: 1   MEDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 84  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG 141
           DSVSQPEYAKIIGSVMYLMNYTRLDIAY VSRLSRYT NPDRYHW+ALRHLLRY+KG
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRLDIAYAVSRLSRYTQNPDRYHWDALRHLLRYLKG 117

[Close]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL
Match: A0A5D3D697 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00120 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 24  MIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNEG 83
           M DL EADVI GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFD SKHLKKN+G
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDTSKHLKKNKG 60

Query: 84  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRYVKG 141
           DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRY W+ALRHLLRY+KG
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYLWDALRHLLRYLKG 117

[Close]

BLAST of Cmc03g0066331 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MLIFRTNMELIIDIKLFLSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKF 60
           ++I   N   + ++K  L S F++ DL       G++I ++   +++CQ  Y   +L + 
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  DSFDVSPVRTPFDASKHLKKNE-GDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRY 120
                 P   P D S     +  GD V    Y ++IG +MYL   TRLDI++ V++LS++
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQF 406

Query: 121 THNPDRYHWNALRHLLRYVKG 141
           +  P   H  A+  +L Y+KG
Sbjct: 407 SEAPRLAHQQAVMKILHYIKG 426

[Close]

BLAST of Cmc03g0066331 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-12
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 18  LSSHFEMIDLREADVIFGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKH 77
           LSS F M DL       G++I+ + + L L Q+ Y E+IL      D  P+ TP     +
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 78  LKKNEGDSVSQPEYAKIIGSVMYLMNYTRLDIAYVVSRLSRYTHNPDRYHWNALRHLLRY 137
              +        ++  I+G++ YL   TR DI+Y V+ + +  H P    ++ L+ +LRY
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 138 VKG 141
           VKG
Sbjct: 147 VKG 148

The following BLAST results are available for this feature:

BLAST of Cmc03g0066331 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	8.4e-64	90.71	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	2.8e-59	88.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0045258.1	1.2e-54	83.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-cop...	[more]
TYK04656.1	1.6e-54	93.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0035900.1	3.6e-54	93.16	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19055.1 ty1-cop...	[more]

BLAST of Cmc03g0066331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.3e-18	37.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.5e-15	35.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-14	36.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	5.4e-13	32.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	6.6e-11	31.71	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0066331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	4.1e-64	90.71	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7W6	1.4e-59	88.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TQW7	5.9e-55	83.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C2K6	7.7e-55	93.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D697	1.7e-54	93.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0066331 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.6e-12	29.79	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.7e-12	31.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 1.1E-9 score: 38.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0066331.1	Cmc03g0066331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding