Cmc03g0066251 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0066251
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPolyprotein, putative
LocationCMiso1.1chr03: 8141597 .. 8142274 (-)
RNA-Seq ExpressionCmc03g0066251
SyntenyCmc03g0066251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATGTTTGTTTTTCCAATACATACTTGTTTACTTTAACTAAAAATAATGTATTTGTTGGGAAGGGTTACGCTACTAATGGCATGTTCAAATTGAATCTAGAAATTAATAAGATTGCATCTTCTGCTTACATGTTAACTTCTTTTAATGTTTGGCATGCTAGACTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTAAATCTTATATCTAAGTTATCTCTGCATGATTTTGAGAAATGTGCATGTTGTAATCAAGCTAAGAGAACTAAAACCTCGCATAAGTTTGTAACTAGAGTAACAGAGCCTTTAGAACTAATTCATTCTGACTTATATGAATTTGATGAGACTTTAACTAGAAACAGTAAAAGGTATGTAATTACCTTTGTAGATGATAGTTCTAACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATAAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAATGAAATAATTAAGAGACTTCGTAGTGATAGAGGAACTGAATATGATTTAGTTGCTTTCAATGAGTTTTATAACTCAAACGGAATAATACATGAAATTATTACGCCTTATTCTCCTGAAATGAATGGAAAAGCAGAAAGAAATAATATAACTCTAACTGAACTTGTCTTATCTTAG

mRNA sequence

ATGATCAATGTTTGTTTTTCCAATACATACTTGTTTACTTTAACTAAAAATAATGTATTTGTTGGGAAGGGTTACGCTACTAATGGCATGTTCAAATTGAATCTAGAAATTAATAAGATTGCATCTTCTGCTTACATGTTAACTTCTTTTAATGTTTGGCATGCTAGACTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTAAATCTTATATCTAAGTTATCTCTGCATGATTTTGAGAAATGTGCATGTTGTAATCAAGCTAAGAGAACTAAAACCTCGCATAAGTTTGTAACTAGAGTAACAGAGCCTTTAGAACTAATTCATTCTGACTTATATGAATTTGATGAGACTTTAACTAGAAACAGTAAAAGGTATGTAATTACCTTTGTAGATGATAGTTCTAACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATAAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAATGAAATAATTAAGAGACTTCGTAGTGATAGAGGAACTGAATATGATTTAGTTGCTTTCAATGAGTTTTATAACTCAAACGGAATAATACATGAAATTATTACGCCTTATTCTCCTGAAATGAATGGAAAAGCAGAAAGAAATAATATAACTCTAACTGAACTTGTCTTATCTTAG

Coding sequence (CDS)

ATGATCAATGTTTGTTTTTCCAATACATACTTGTTTACTTTAACTAAAAATAATGTATTTGTTGGGAAGGGTTACGCTACTAATGGCATGTTCAAATTGAATCTAGAAATTAATAAGATTGCATCTTCTGCTTACATGTTAACTTCTTTTAATGTTTGGCATGCTAGACTTTGTCATGTTAATAAAAGATTAATTAGTAACATGAGTAGGTTAAATCTTATATCTAAGTTATCTCTGCATGATTTTGAGAAATGTGCATGTTGTAATCAAGCTAAGAGAACTAAAACCTCGCATAAGTTTGTAACTAGAGTAACAGAGCCTTTAGAACTAATTCATTCTGACTTATATGAATTTGATGAGACTTTAACTAGAAACAGTAAAAGGTATGTAATTACCTTTGTAGATGATAGTTCTAACTACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCCTATAAAATGTTCAAAGTCTTTGTAACTGAAATAGAGAACCAGTTTAATGAAATAATTAAGAGACTTCGTAGTGATAGAGGAACTGAATATGATTTAGTTGCTTTCAATGAGTTTTATAACTCAAACGGAATAATACATGAAATTATTACGCCTTATTCTCCTGAAATGAATGGAAAAGCAGAAAGAAATAATATAACTCTAACTGAACTTGTCTTATCTTAG

Protein sequence

MINVCFSNTYLFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSRLNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTELVLS
Homology
BLAST of Cmc03g0066251 vs. NCBI nr
Match: KAA0034938.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK21293.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 8.7e-103
Identity = 191/215 (88.84%), Postives = 201/215 (93.49%), Query Frame = 0

Query: 11  LFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 70
           LFTLTKNNVFVGKGYAT+GMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR
Sbjct: 259 LFTLTKNNVFVGKGYATDGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 318

Query: 71  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYV 130
           LNLI KLSLHDFEKCACC+QAK TKTSHKFVTRVT+PLELIHSDL EFD TLTRNSKRYV
Sbjct: 319 LNLIPKLSLHDFEKCACCSQAKITKTSHKFVTRVTKPLELIHSDLCEFDGTLTRNSKRYV 378

Query: 131 ITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEF 190
           +TF+DD S+YTFIYLLKNKSDAY+MFKVFVTEIENQFN+ IKRLRSDRGTEYD VAFNEF
Sbjct: 379 VTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDRGTEYDSVAFNEF 438

Query: 191 YNSNGIIHEIITPYSPEMNGKAERNNITLTELVLS 226
           YNS GIIHE  TPYSPEMNGK ER N TLTEL ++
Sbjct: 439 YNSKGIIHETTTPYSPEMNGKEERKNRTLTELAVA 473

BLAST of Cmc03g0066251 vs. NCBI nr
Match: ABI34306.1 (Polyprotein, putative [Solanum demissum])

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-58
Identity = 119/216 (55.09%), Postives = 150/216 (69.44%), Query Frame = 0

Query: 7   SNTYLFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLIS 66
           SN Y+  + K  +FVGKGYA +GMFKLN+E+NK ++S YML+S N WHARLCH+N R + 
Sbjct: 397 SNQYV--IVKKGIFVGKGYACDGMFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVG 456

Query: 67  NMSRLNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNS 126
            MS L LI  +   +FEKC  C++AK TK  H  V R T+ LEL+H+D+ E    LTR  
Sbjct: 457 IMSSLGLIPMIK-KNFEKCEACSKAKITKRPHFQVERKTDLLELVHTDICELGGILTRGG 516

Query: 127 KRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVA 186
            RY ITF+DD S +T++YL+KNKSDA++ FK ++ E+ENQF   IKR+RSDRG EY+   
Sbjct: 517 NRYFITFIDDFSKFTYVYLMKNKSDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNE 576

Query: 187 FNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTEL 223
           FN F  S GIIHE   PYSP  NG AER N TL EL
Sbjct: 577 FNSFVRSLGIIHETTPPYSPSSNGVAERKNRTLVEL 609

BLAST of Cmc03g0066251 vs. NCBI nr
Match: KAA0046026.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-51
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 0

Query: 11  LFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 70
           LFTLTKNNV+VGKGYAT+GMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR
Sbjct: 124 LFTLTKNNVYVGKGYATDGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 183

Query: 71  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKR 129
           LNLI KLSLHDFEKCACC+QAK T+TSHK VT VT PLELIHSDL EFD TLTRNSKR
Sbjct: 184 LNLIPKLSLHDFEKCACCSQAKITETSHKSVTIVTGPLELIHSDLCEFDGTLTRNSKR 241

BLAST of Cmc03g0066251 vs. NCBI nr
Match: KAG5527251.1 (hypothetical protein RHGRI_028223 [Rhododendron griersonianum])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 111/211 (52.61%), Postives = 141/211 (66.82%), Query Frame = 0

Query: 14  LTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSRLNL 73
           LTKN +FVGKGY  NGMFKL++  N  ASS Y++ SF++WH+RL H+N R I NMSR  L
Sbjct: 306 LTKNGMFVGKGYGCNGMFKLSINENNTASS-YIVDSFSLWHSRLAHLNFRSIKNMSRFGL 365

Query: 74  ISKLSLHD--FEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYVI 133
           I   + HD   +KC  C +AK  K S   V R +E L+LIHSD+ E +  LTR  KRY  
Sbjct: 366 I---NYHDNVCDKCEICAKAKMAKKSFPSVQRNSEILDLIHSDICELNGVLTRGGKRYFA 425

Query: 134 TFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEFY 193
           TFVDD S YTF+YLL+ K + +  F+ +  E+ENQ N+ IK LRSDRG EY    F++F 
Sbjct: 426 TFVDDFSKYTFVYLLRTKDEVFNKFQAYKNEVENQLNKKIKVLRSDRGMEYFPHEFDDFC 485

Query: 194 NSNGIIHEIITPYSPEMNGKAERNNITLTEL 223
             +GIIH+   PYSP+ NG AER N TLTE+
Sbjct: 486 EMHGIIHQKTAPYSPQQNGLAERKNRTLTEM 512

BLAST of Cmc03g0066251 vs. NCBI nr
Match: XP_021732277.1 (uncharacterized protein LOC110699091 [Chenopodium quinoa])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 102/146 (69.86%), Postives = 122/146 (83.56%), Query Frame = 0

Query: 11  LFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTS-FNVWHARLCHVNKRLISNMS 70
           LFTLTKN +FVGKGYAT+GMFKLN+E+NKI++SAYML S  NVWH RLCHVNKRLI NMS
Sbjct: 589 LFTLTKNGIFVGKGYATDGMFKLNVEVNKISNSAYMLCSTINVWHTRLCHVNKRLIKNMS 648

Query: 71  RLNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRY 130
            L LI  +SL+DF+KC  C+QAK TKT HK V R +EPL+LIHSD+ E + TLTRN +RY
Sbjct: 649 NLGLIPNISLNDFDKCDSCSQAKITKTPHKSVIRNSEPLDLIHSDICELNGTLTRNGQRY 708

Query: 131 VITFVDDSSNYTFIYLLKNKSDAYKM 156
            ITF+DD S+YT IYL+KNKSDA++M
Sbjct: 709 FITFIDDCSDYTCIYLMKNKSDAFEM 734

BLAST of Cmc03g0066251 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 69/214 (32.24%), Postives = 119/214 (55.61%), Query Frame = 0

Query: 14  LTKNNVFVGKGYATNGMFKLNLEI-NKIASSAYMLTSFNVWHARLCHVNKRLISNMSRLN 73
           LTK ++ + KG A   +++ N EI     ++A    S ++WH R+ H++++ +  +++ +
Sbjct: 385 LTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKS 444

Query: 74  LISKLSLHDFEKCACCNQAKRTKTSHKFVT-RVTEPLELIHSDLYEFDETLTRNSKRYVI 133
           LIS       + C  C   K+ + S +  + R    L+L++SD+    E  +    +Y +
Sbjct: 445 LISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFV 504

Query: 134 TFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEFY 193
           TF+DD+S   ++Y+LK K   +++F+ F   +E +    +KRLRSD G EY    F E+ 
Sbjct: 505 TFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYC 564

Query: 194 NSNGIIHEIITPYSPEMNGKAERNNITLTELVLS 226
           +S+GI HE   P +P+ NG AER N T+ E V S
Sbjct: 565 SSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRS 598

BLAST of Cmc03g0066251 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 67/218 (30.73%), Postives = 108/218 (49.54%), Query Frame = 0

Query: 13  TLTKNNVFVGKGYA-TNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSRL 72
           T++KN + V K     N +  +N +   I  +A    +F +WH R  H++   +  + R 
Sbjct: 379 TISKNGLMVVKNSGMLNNVPVINFQAYSI--NAKHKNNFRLWHERFGHISDGKLLEIKRK 438

Query: 73  NLISKLSLHD-----FEKCACCNQAKRTKTSHKFV---TRVTEPLELIHSDLYEFDETLT 132
           N+ S  SL +      E C  C   K+ +   K +   T +  PL ++HSD+      +T
Sbjct: 439 NMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVT 498

Query: 133 RNSKRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYD 192
            + K Y + FVD  ++Y   YL+K KSD + MF+ FV + E  FN  +  L  D G EY 
Sbjct: 499 LDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYL 558

Query: 193 LVAFNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTE 222
                +F    GI + +  P++P++NG +ER   T+TE
Sbjct: 559 SNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITE 594

BLAST of Cmc03g0066251 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-17
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 0

Query: 53  WHARLCHVNKRLISNMSRLNLISKLS-LHDFEKCACC--NQAKRTKTSHKFVTRVTEPLE 112
           WHARL H    +++++     +S L+  H F  C+ C  N++ +   S   +   T PLE
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINS-TRPLE 526

Query: 113 LIHSDLYEFDETLTRNSKRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNE 172
            I+SD++     L+ ++ RY + FVD  + YT++Y LK KS   + F  F   +EN+F  
Sbjct: 527 YIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQT 586

Query: 173 IIKRLRSDRGTEYDLVAFNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTELVLS 226
            I    SD G E+  VA  E+++ +GI H    P++PE NG +ER +  + E  L+
Sbjct: 587 RIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLT 638

BLAST of Cmc03g0066251 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.9e-16
Identity = 55/176 (31.25%), Postives = 99/176 (56.25%), Query Frame = 0

Query: 53  WHARLCHVNKRLISNMSRLNLISKLS-LHDFEKCACC--NQAKRTKTSHKFVTRVTEPLE 112
           WH+RL H +  +++++   + +  L+  H    C+ C  N++ +   S+  +T  ++PLE
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS-SKPLE 505

Query: 113 LIHSDLYEFDETLTRNSKRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNE 172
            I+SD++     L+ ++ RY + FVD  + YT++Y LK KS     F +F + +EN+F  
Sbjct: 506 YIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQT 565

Query: 173 IIKRLRSDRGTEYDLVAFNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTELVLS 226
            I  L SD G E+  V   ++ + +GI H    P++PE NG +ER +  + E+ L+
Sbjct: 566 RIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLT 617

BLAST of Cmc03g0066251 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 50/180 (27.78%), Postives = 84/180 (46.67%), Query Frame = 0

Query: 54  HARLCHVNKRLISNMSRLNLISKLSLHDFE-------KCACCNQAKRTKTSHKFVTRVT- 113
           H  L H N R I    + N ++ L   D E       +C  C   K TK  H   +R+  
Sbjct: 595 HRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 654

Query: 114 ----EPLELIHSDLYEFDETLTRNSKRYVITFVDDSSNYTFIYLL--KNKSDAYKMFKVF 173
               EP + +H+D++     L +++  Y I+F D+ + + ++Y L  + +     +F   
Sbjct: 655 QESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSI 714

Query: 174 VTEIENQFNEIIKRLRSDRGTEYDLVAFNEFYNSNGIIHEIITPYSPEMNGKAERNNITL 220
           +  I+NQFN  +  ++ DRG+EY     ++F+ + GI     T      +G AER N TL
Sbjct: 715 LAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTL 774

BLAST of Cmc03g0066251 vs. ExPASy TrEMBL
Match: A0A5D3DCJ1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00010 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 191/215 (88.84%), Postives = 201/215 (93.49%), Query Frame = 0

Query: 11  LFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 70
           LFTLTKNNVFVGKGYAT+GMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR
Sbjct: 259 LFTLTKNNVFVGKGYATDGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 318

Query: 71  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYV 130
           LNLI KLSLHDFEKCACC+QAK TKTSHKFVTRVT+PLELIHSDL EFD TLTRNSKRYV
Sbjct: 319 LNLIPKLSLHDFEKCACCSQAKITKTSHKFVTRVTKPLELIHSDLCEFDGTLTRNSKRYV 378

Query: 131 ITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEF 190
           +TF+DD S+YTFIYLLKNKSDAY+MFKVFVTEIENQFN+ IKRLRSDRGTEYD VAFNEF
Sbjct: 379 VTFIDDCSDYTFIYLLKNKSDAYEMFKVFVTEIENQFNKRIKRLRSDRGTEYDSVAFNEF 438

Query: 191 YNSNGIIHEIITPYSPEMNGKAERNNITLTELVLS 226
           YNS GIIHE  TPYSPEMNGK ER N TLTEL ++
Sbjct: 439 YNSKGIIHETTTPYSPEMNGKEERKNRTLTELAVA 473

BLAST of Cmc03g0066251 vs. ExPASy TrEMBL
Match: A0A7N2L531 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.5e-63
Identity = 132/212 (62.26%), Postives = 153/212 (72.17%), Query Frame = 0

Query: 12  FTLTKNNVFVGKGYATNGMFKLNLEINKIA-SSAYMLTSFNVWHARLCHVNKRLISNMSR 71
           + +TK  +FVGKGYA +GMFKLN+E NK + SS YML+S N WHARLCH+N R +  MS 
Sbjct: 423 YVITKKGLFVGKGYACDGMFKLNVENNKASTSSVYMLSSINFWHARLCHINSRYVGIMSS 482

Query: 72  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYV 131
           L LI +LS  DFEKC  C+QAK TK  HK V R TE LELIHSDL EF+  LTR   RY+
Sbjct: 483 LGLIPRLS-KDFEKCETCSQAKITKRPHKNVVRNTELLELIHSDLCEFEGILTRGGNRYI 542

Query: 132 ITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEF 191
           ITF+DD S YT IYLLKNKSDA++ F+ F+ E+ENQF   IKR+RSDRG EY+  AFN F
Sbjct: 543 ITFIDDFSKYTTIYLLKNKSDAFEKFQDFLQEVENQFGRKIKRIRSDRGREYESSAFNSF 602

Query: 192 YNSNGIIHEIITPYSPEMNGKAERNNITLTEL 223
             S GIIHE   PYSP  NG AER N TL EL
Sbjct: 603 AQSLGIIHETTAPYSPASNGVAERKNRTLIEL 633

BLAST of Cmc03g0066251 vs. ExPASy TrEMBL
Match: A0A7N2R9F3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 4.3e-63
Identity = 131/212 (61.79%), Postives = 152/212 (71.70%), Query Frame = 0

Query: 12  FTLTKNNVFVGKGYATNGMFKLNLEINKIA-SSAYMLTSFNVWHARLCHVNKRLISNMSR 71
           + +TK  +FVGKGYA +GMFKLN+E NK + SS YML+S N WHARLCH+N R +  MS 
Sbjct: 423 YVITKKGLFVGKGYACDGMFKLNVENNKASTSSVYMLSSINFWHARLCHINSRYVGIMSS 482

Query: 72  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKRYV 131
           L LI +LS  DFEKC  C+QAK TK  HK V R TE LELIHSDL EF+  LTR   RY+
Sbjct: 483 LGLIPRLS-KDFEKCETCSQAKITKKPHKSVVRNTELLELIHSDLCEFEGILTRGGNRYI 542

Query: 132 ITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVAFNEF 191
           ITF+DD S YT IYLLKNKSDA++ F+ F+ E+ENQF   IKR+RSDRG EY+  AFN F
Sbjct: 543 ITFIDDFSKYTTIYLLKNKSDAFEKFQDFLKEVENQFGRKIKRIRSDRGREYESSAFNSF 602

Query: 192 YNSNGIIHEIITPYSPEMNGKAERNNITLTEL 223
             S GIIHE   PYSP  NG  ER N TL EL
Sbjct: 603 VQSLGIIHETTAPYSPASNGVVERKNRTLIEL 633

BLAST of Cmc03g0066251 vs. ExPASy TrEMBL
Match: Q0KIN7 (Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_27t00018 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.4e-58
Identity = 119/216 (55.09%), Postives = 150/216 (69.44%), Query Frame = 0

Query: 7   SNTYLFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLIS 66
           SN Y+  + K  +FVGKGYA +GMFKLN+E+NK ++S YML+S N WHARLCH+N R + 
Sbjct: 397 SNQYV--IVKKGIFVGKGYACDGMFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVG 456

Query: 67  NMSRLNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNS 126
            MS L LI  +   +FEKC  C++AK TK  H  V R T+ LEL+H+D+ E    LTR  
Sbjct: 457 IMSSLGLIPMIK-KNFEKCEACSKAKITKRPHFQVERKTDLLELVHTDICELGGILTRGG 516

Query: 127 KRYVITFVDDSSNYTFIYLLKNKSDAYKMFKVFVTEIENQFNEIIKRLRSDRGTEYDLVA 186
            RY ITF+DD S +T++YL+KNKSDA++ FK ++ E+ENQF   IKR+RSDRG EY+   
Sbjct: 517 NRYFITFIDDFSKFTYVYLMKNKSDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNE 576

Query: 187 FNEFYNSNGIIHEIITPYSPEMNGKAERNNITLTEL 223
           FN F  S GIIHE   PYSP  NG AER N TL EL
Sbjct: 577 FNSFVRSLGIIHETTPPYSPSSNGVAERKNRTLVEL 609

BLAST of Cmc03g0066251 vs. ExPASy TrEMBL
Match: A0A5A7TV55 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005950 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 0

Query: 11  LFTLTKNNVFVGKGYATNGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 70
           LFTLTKNNV+VGKGYAT+GMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR
Sbjct: 124 LFTLTKNNVYVGKGYATDGMFKLNLEINKIASSAYMLTSFNVWHARLCHVNKRLISNMSR 183

Query: 71  LNLISKLSLHDFEKCACCNQAKRTKTSHKFVTRVTEPLELIHSDLYEFDETLTRNSKR 129
           LNLI KLSLHDFEKCACC+QAK T+TSHK VT VT PLELIHSDL EFD TLTRNSKR
Sbjct: 184 LNLIPKLSLHDFEKCACCSQAKITETSHKSVTIVTGPLELIHSDLCEFDGTLTRNSKR 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034938.18.7e-10388.84putative Polyprotein [Cucumis melo var. makuwa] >TYK21293.1 putative Polyprotein... [more]
ABI34306.15.0e-5855.09Polyprotein, putative [Solanum demissum][more]
KAA0046026.12.7e-5190.68putative Polyprotein [Cucumis melo var. makuwa][more]
KAG5527251.11.1e-4952.61hypothetical protein RHGRI_028223 [Rhododendron griersonianum][more]
XP_021732277.11.1e-4969.86uncharacterized protein LOC110699091 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
P109781.3e-2432.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.2e-1930.73Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW27.6e-1733.52Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT944.9e-1631.25Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q124911.6e-1127.78Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5D3DCJ14.2e-10388.84Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119... [more]
A0A7N2L5312.5e-6362.26Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2R9F34.3e-6361.79Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Q0KIN72.4e-5855.09Polyprotein, putative OS=Solanum demissum OX=50514 GN=SDM1_27t00018 PE=4 SV=1[more]
A0A5A7TV551.3e-5190.68Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 105..206
e-value: 2.0E-15
score: 56.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 103..225
score: 19.785509
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 99..225
e-value: 1.4E-25
score: 91.8
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 40..92
e-value: 2.0E-11
score: 43.6
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 91..221
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 91..221
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 102..223

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0066251.1Cmc03g0066251.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding