Cmc03g0066181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0066181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 8039565 .. 8040203 (-)
RNA-Seq Expression	Cmc03g0066181
Synteny	Cmc03g0066181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCAATAAGATTAGAAGATTGGTTAAGAGTGGACTTCCAAATCAGTTAGAAGATAGCTTTTTACCTCCATGTGATTCCTCTCTTGAAGGAAAGATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACCCCTTTAGAGCTCGTAATTAAAGAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTTTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTAGGAGTCTGATGTATGCAATGTTATGTACTAGATCTGACATTTGCTATTCAGTGGGAATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTATGTATGGTTCTAAGGATCTGATCCTTACTGGATACATTGACTCCGATTTTTAA

mRNA sequence

ATGAATCTCAATAAGATTAGAAGATTGGTTAAGAGTGGACTTCCAAATCAGTTAGAAGATAGCTTTTTACCTCCATGTGATTCCTCTCTTGAAGGAAAGATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACCCCTTTAGAGCTCGTAATTAAAGAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTTTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTAGGAGTCTGATGTATGCAATGTTATGTACTAGATCTGACATTTGCTATTCAGTGGGAATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTATGTATGGTTCTAAGGATCTGATCCTTACTGGATACATTGACTCCGATTTTTAA

Coding sequence (CDS)

ATGAATCTCAATAAGATTAGAAGATTGGTTAAGAGTGGACTTCCAAATCAGTTAGAAGATAGCTTTTTACCTCCATGTGATTCCTCTCTTGAAGGAAAGATGACCAAAAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAACCCCTTTAGAGCTCGTAATTAAAGAATGGCTAGCTACGCAATTCCAAATGAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAGCCATGTCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTCCAAAAAGGGTTTGCTGCCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTAGGAGTCTGATGTATGCAATGTTATGTACTAGATCTGACATTTGCTATTCAGTGGGAATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATATTTTAGAAGAACAAAAGACTACATGCTTATGTATGGTTCTAAGGATCTGATCCTTACTGGATACATTGACTCCGATTTTTAA

Protein sequence

MNLNKIRRLVKSGLPNQLEDSFLPPCDSSLEGKMTKRSFTGKGLRAKTPLELVIKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF

Homology

[Close]

BLAST of Cmc03g0066181 vs. NCBI nr
Match: TYK03131.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.0 bits (881), Expect = 9.4e-91
Identity = 185/273 (67.77%), Postives = 196/273 (71.79%), Query Frame = 0


Query: 1   MNLNKIRRLVKSGLPNQLEDSFLPPCDSSLEGKMTKRSFTGKGLRAKTPLELV------- 60
           ++ N+I RLVKSGL +QLED+ LPPC S LEGKMTKRSFTGKGLRAKTPLELV       
Sbjct: 117 VSANQIGRLVKSGLLSQLEDNSLPPCGSCLEGKMTKRSFTGKGLRAKTPLELVHLGLCGP 176

Query: 61  ------------------------------------------------------IKEWLA 120
                                                                 IK+WLA
Sbjct: 177 MNVKARGGYKYFISFIDDYSRYGHVYLIQNKFDSFEKFKEYKAEVENESGHLADIKKWLA 236

Query: 121 TQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIH 180
           TQFQMKDL NAQYVLGIQIV+NRKNKTLAMSQTSYIDKMLSRYKMQNS+KGLLPY+YGIH
Sbjct: 237 TQFQMKDLENAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSRKGLLPYKYGIH 296

Query: 181 LSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGRDHWTA 213
           LSKEQ PKTPQEVEDMSNIPYAS V SLMYAMLCT  DICYSVGIVSRYQSN GRDHWT 
Sbjct: 297 LSKEQYPKTPQEVEDMSNIPYASIVGSLMYAMLCTIPDICYSVGIVSRYQSNSGRDHWTT 356

[Close]

BLAST of Cmc03g0066181 vs. NCBI nr
Match: KAA0052272.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.5e-85
Identity = 183/284 (64.44%), Postives = 190/284 (66.90%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTKRSFTGKGL------RAKTPL--------- 65
           IRRLVK+GL +QLED+ LPPCDS LEGKMTKRSFTGK          K PL         
Sbjct: 196 IRRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTGKAQIVIPDNGIKDPLTYKQAMNDV 255

Query: 66  -------------------------------------------------------ELV-- 125
                                                                   LV  
Sbjct: 256 DCDQWVKAMDLEMESMYSNSVWTLVDQSNDVKPIGCKWIYKRIRDQASKVQTFKARLVAK 315

Query: 126 -----IKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK 185
                IK+WLATQFQMKDL NAQYVLGI+IVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK
Sbjct: 316 GYLTDIKKWLATQFQMKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK 375

Query: 186 KGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRY 213
           K LLPYRYGIHLSKEQCPKTPQEV+DMSNIPYASAV SLMYAMLCTR DICYSVGIVSRY
Sbjct: 376 KSLLPYRYGIHLSKEQCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRY 435

[Close]

BLAST of Cmc03g0066181 vs. NCBI nr
Match: KAA0064149.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 5.5e-83
Identity = 166/218 (76.15%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTK--RSFTGKGLRAKTPLELV---------I 65
           I RLVKSGL +QLED+ LPPCDS  EGKMTK   S     +     + L+         I
Sbjct: 300 IGRLVKSGLLSQLEDNSLPPCDSCFEGKMTKIINSIVAFLVLYVDDILLIGNDVGHLTDI 359

Query: 66  KEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPY 125
           K+WLATQFQMKDLGNAQYVLGIQI+RNRKNKTLA+SQTSYI++ML RYKMQNSKKGLL Y
Sbjct: 360 KKWLATQFQMKDLGNAQYVLGIQIIRNRKNKTLAISQTSYINEMLLRYKMQNSKKGLLLY 419

Query: 126 RYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGR 185
           RY IHLSKEQCPKTPQE EDMSNIPYASAV SLMYAMLCTR +ICYSV IVSRYQSNPGR
Sbjct: 420 RYEIHLSKEQCPKTPQEAEDMSNIPYASAVGSLMYAMLCTRLNICYSVEIVSRYQSNPGR 479

Query: 186 DHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           DHW  VKNILKY RRTKDYML+YGSKDLILTGY +SDF
Sbjct: 480 DHWITVKNILKYLRRTKDYMLVYGSKDLILTGYTNSDF 517

[Close]

BLAST of Cmc03g0066181 vs. NCBI nr
Match: TYK16012.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 5.5e-83
Identity = 166/218 (76.15%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTK--RSFTGKGLRAKTPLELV---------I 65
           I RLVKSGL +QLED+ LPPCDS  EGKMTK   S     +     + L+         I
Sbjct: 336 IGRLVKSGLLSQLEDNSLPPCDSCFEGKMTKIINSIVAFLVLYVDDILLIGNDVGHLTDI 395

Query: 66  KEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPY 125
           K+WLATQFQMKDLGNAQYVLGIQI+RNRKNKTLA+SQTSYI++ML RYKMQNSKKGLL Y
Sbjct: 396 KKWLATQFQMKDLGNAQYVLGIQIIRNRKNKTLAISQTSYINEMLLRYKMQNSKKGLLLY 455

Query: 126 RYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGR 185
           RY IHLSKEQCPKTPQE EDMSNIPYASAV SLMYAMLCTR +ICYSV IVSRYQSNPGR
Sbjct: 456 RYEIHLSKEQCPKTPQEAEDMSNIPYASAVGSLMYAMLCTRLNICYSVEIVSRYQSNPGR 515

Query: 186 DHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           DHW  VKNILKY RRTKDYML+YGSKDLILTGY +SDF
Sbjct: 516 DHWITVKNILKYLRRTKDYMLVYGSKDLILTGYTNSDF 553

[Close]

BLAST of Cmc03g0066181 vs. NCBI nr
Match: TYK11050.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-80
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 54  IKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP 113
           IKEWLATQFQMKDLGNAQYVLGIQIVRN KNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP
Sbjct: 87  IKEWLATQFQMKDLGNAQYVLGIQIVRNGKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP 146

Query: 114 YRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPG 173
           YRYGIHLSKEQCPKTPQEVEDMSNIPYASA+ SLMYAMLCTR DICYSVGIV+RYQSNPG
Sbjct: 147 YRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPG 206

Query: 174 RDHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           RDHWTAVKNILKY RRTKDYML+YGSKDLILTGY DSDF
Sbjct: 207 RDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDF 245

[Close]

BLAST of Cmc03g0066181 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.5e-38
Identity = 83/170 (48.82%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 42   KGLRAKTPLELVIKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSR 101
            KGL AK      +K  L+  F MKDLG AQ +LG++IVR R ++ L +SQ  YI+++L R
Sbjct: 1019 KGLIAK------LKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLER 1078

Query: 102  YKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYS 161
            + M+N+K    P    + LSK+ CP T +E  +M+ +PY+SAV SLMYAM+CTR DI ++
Sbjct: 1079 FNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHA 1138

Query: 162  VGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSD 212
            VG+VSR+  NPG++HW AVK IL+Y R T    L +G  D IL GY D+D
Sbjct: 1139 VGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDAD 1182

[Close]

BLAST of Cmc03g0066181 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 55   KEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP- 114
            K +L  +F+M DL   ++ +GI+I    +   + +SQ++Y+ K+LS++ M+N      P 
Sbjct: 1105 KRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL 1164

Query: 115  ---YRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQS 174
                 Y +  S E C           N P  S +  LMY MLCTR D+  +V I+SRY S
Sbjct: 1165 PSKINYELLNSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSS 1224

Query: 175  NPGRDHWTAVKNILKYFRRTKDYMLMYGSKDLI----LTGYIDSDF 213
                + W  +K +L+Y + T D  L++  K+L     + GY+DSD+
Sbjct: 1225 KNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFENKIIGYVDSDW 1256

[Close]

BLAST of Cmc03g0066181 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 135 MSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGRDHWTAVKNILKYFRRTKDYM 194
           M N+PY SAV ++MY M+ TR D+  +VG++S++ S+P   HW A+K +L+Y + T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 195 LMYGSKDLI-LTGYIDSDF 213
           L +       L GY D+D+
Sbjct: 61  LEFTRAGTAKLVGYSDADW 79

[Close]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL
Match: A0A5D3BTT3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00060 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.5e-91
Identity = 185/273 (67.77%), Postives = 196/273 (71.79%), Query Frame = 0


Query: 1   MNLNKIRRLVKSGLPNQLEDSFLPPCDSSLEGKMTKRSFTGKGLRAKTPLELV------- 60
           ++ N+I RLVKSGL +QLED+ LPPC S LEGKMTKRSFTGKGLRAKTPLELV       
Sbjct: 117 VSANQIGRLVKSGLLSQLEDNSLPPCGSCLEGKMTKRSFTGKGLRAKTPLELVHLGLCGP 176

Query: 61  ------------------------------------------------------IKEWLA 120
                                                                 IK+WLA
Sbjct: 177 MNVKARGGYKYFISFIDDYSRYGHVYLIQNKFDSFEKFKEYKAEVENESGHLADIKKWLA 236

Query: 121 TQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIH 180
           TQFQMKDL NAQYVLGIQIV+NRKNKTLAMSQTSYIDKMLSRYKMQNS+KGLLPY+YGIH
Sbjct: 237 TQFQMKDLENAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSRKGLLPYKYGIH 296

Query: 181 LSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGRDHWTA 213
           LSKEQ PKTPQEVEDMSNIPYAS V SLMYAMLCT  DICYSVGIVSRYQSN GRDHWT 
Sbjct: 297 LSKEQYPKTPQEVEDMSNIPYASIVGSLMYAMLCTIPDICYSVGIVSRYQSNSGRDHWTT 356

[Close]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL
Match: A0A5A7U945 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001000 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.7e-85
Identity = 183/284 (64.44%), Postives = 190/284 (66.90%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTKRSFTGKGL------RAKTPL--------- 65
           IRRLVK+GL +QLED+ LPPCDS LEGKMTKRSFTGK          K PL         
Sbjct: 196 IRRLVKNGLLSQLEDNSLPPCDSYLEGKMTKRSFTGKAQIVIPDNGIKDPLTYKQAMNDV 255

Query: 66  -------------------------------------------------------ELV-- 125
                                                                   LV  
Sbjct: 256 DCDQWVKAMDLEMESMYSNSVWTLVDQSNDVKPIGCKWIYKRIRDQASKVQTFKARLVAK 315

Query: 126 -----IKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK 185
                IK+WLATQFQMKDL NAQYVLGI+IVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK
Sbjct: 316 GYLTDIKKWLATQFQMKDLENAQYVLGIEIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSK 375

Query: 186 KGLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRY 213
           K LLPYRYGIHLSKEQCPKTPQEV+DMSNIPYASAV SLMYAMLCTR DICYSVGIVSRY
Sbjct: 376 KSLLPYRYGIHLSKEQCPKTPQEVKDMSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRY 435

[Close]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL
Match: A0A5D3CWV9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00080 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 166/218 (76.15%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTK--RSFTGKGLRAKTPLELV---------I 65
           I RLVKSGL +QLED+ LPPCDS  EGKMTK   S     +     + L+         I
Sbjct: 336 IGRLVKSGLLSQLEDNSLPPCDSCFEGKMTKIINSIVAFLVLYVDDILLIGNDVGHLTDI 395

Query: 66  KEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPY 125
           K+WLATQFQMKDLGNAQYVLGIQI+RNRKNKTLA+SQTSYI++ML RYKMQNSKKGLL Y
Sbjct: 396 KKWLATQFQMKDLGNAQYVLGIQIIRNRKNKTLAISQTSYINEMLLRYKMQNSKKGLLLY 455

Query: 126 RYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGR 185
           RY IHLSKEQCPKTPQE EDMSNIPYASAV SLMYAMLCTR +ICYSV IVSRYQSNPGR
Sbjct: 456 RYEIHLSKEQCPKTPQEAEDMSNIPYASAVGSLMYAMLCTRLNICYSVEIVSRYQSNPGR 515

Query: 186 DHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           DHW  VKNILKY RRTKDYML+YGSKDLILTGY +SDF
Sbjct: 516 DHWITVKNILKYLRRTKDYMLVYGSKDLILTGYTNSDF 553

[Close]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL
Match: A0A5A7VF40 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00720 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 166/218 (76.15%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 6   IRRLVKSGLPNQLEDSFLPPCDSSLEGKMTK--RSFTGKGLRAKTPLELV---------I 65
           I RLVKSGL +QLED+ LPPCDS  EGKMTK   S     +     + L+         I
Sbjct: 300 IGRLVKSGLLSQLEDNSLPPCDSCFEGKMTKIINSIVAFLVLYVDDILLIGNDVGHLTDI 359

Query: 66  KEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPY 125
           K+WLATQFQMKDLGNAQYVLGIQI+RNRKNKTLA+SQTSYI++ML RYKMQNSKKGLL Y
Sbjct: 360 KKWLATQFQMKDLGNAQYVLGIQIIRNRKNKTLAISQTSYINEMLLRYKMQNSKKGLLLY 419

Query: 126 RYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPGR 185
           RY IHLSKEQCPKTPQE EDMSNIPYASAV SLMYAMLCTR +ICYSV IVSRYQSNPGR
Sbjct: 420 RYEIHLSKEQCPKTPQEAEDMSNIPYASAVGSLMYAMLCTRLNICYSVEIVSRYQSNPGR 479

Query: 186 DHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           DHW  VKNILKY RRTKDYML+YGSKDLILTGY +SDF
Sbjct: 480 DHWITVKNILKYLRRTKDYMLVYGSKDLILTGYTNSDF 517

[Close]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL
Match: A0A5D3CI71 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.6e-81
Identity = 151/159 (94.97%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 54  IKEWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP 113
           IKEWLATQFQMKDLGNAQYVLGIQIVRN KNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP
Sbjct: 87  IKEWLATQFQMKDLGNAQYVLGIQIVRNGKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLP 146

Query: 114 YRYGIHLSKEQCPKTPQEVEDMSNIPYASAVRSLMYAMLCTRSDICYSVGIVSRYQSNPG 173
           YRYGIHLSKEQCPKTPQEVEDMSNIPYASA+ SLMYAMLCTR DICYSVGIV+RYQSNPG
Sbjct: 147 YRYGIHLSKEQCPKTPQEVEDMSNIPYASAIGSLMYAMLCTRVDICYSVGIVNRYQSNPG 206

Query: 174 RDHWTAVKNILKYFRRTKDYMLMYGSKDLILTGYIDSDF 213
           RDHWTAVKNILKY RRTKDYML+YGSKDLILTGY DSDF
Sbjct: 207 RDHWTAVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDF 245

The following BLAST results are available for this feature:

BLAST of Cmc03g0066181 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03131.1	9.4e-91	67.77	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0052272.1	3.5e-85	64.44	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0064149.1	5.5e-83	76.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK16012.1	5.5e-83	76.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK11050.1	1.2e-80	94.97	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0066181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.5e-38	48.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.0e-15	32.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	7.7e-11	40.51	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTT3	4.5e-91	67.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00060...	[more]
A0A5A7U945	1.7e-85	64.44	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G0010...	[more]
A0A5D3CWV9	2.7e-83	76.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G000...	[more]
A0A5A7VF40	2.7e-83	76.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G0072...	[more]
A0A5D3CI71	5.6e-81	94.97	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00330...	[more]

BLAST of Cmc03g0066181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 54..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0066181.1	Cmc03g0066181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding