Cmc03g0066131 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0066131
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDUF4283 domain-containing protein
LocationCMiso1.1chr03: 7988755 .. 7990204 (+)
RNA-Seq ExpressionCmc03g0066131
SyntenyCmc03g0066131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAAGGAGTTAATAAAGTATACATTATGTCTGTTTTTCCAACTCTATCACTTCAAGGTTGAGCAAAAGTGGTAATGGCTAAATTACCCATTTTTGTTGCAATTTATTTATACTAAATACCGTTGAATAAGGTGAGGAGTATCTTAGATTTGCAAGCCTTTGAATAAGTAGGCCACATAAATGTGTTAATAATGTTTTACCGCATCGCCGACGCTGGGATGAATAACTCTTCATCTCACGATGCTGCGGTCCAATGCCACTGCCCAGCCACCCACCTCTGTCACCTCGTCATCTTCGTTCGTTGATCTTGGAGAACCCTCTCCAAGACATAACTGCCTCAAGAAAGCTCTCAACAAGGATTGAGAACAAGTCCTTCACTTGCGAGTTCGACAGAAATAGTAATGGGAAAGAGATTCGGATATCAGAAGCTCACCAAATCAAAACTTACATGCTCACAGGAGAGGAAACTAACATTGTTTGGTTTATTAATTCTCTCGAGGAAGTCTTACAAGCCCCCAAGAACCCCAAAAAATTGAAGTCTTTGAAATGGAGGTCTTATCTAGGTACAACAAATGACTAACAAGAGAGGATGCTTCTTAGAAGTCACAAAAGTATTGAAATTTGGAAAAAAAAAAAAAGAAAAGGAAATTTAGTCATTCCTCCTAGCATTGATTTTAAAGGATGTTTTAGAAGCATGCTGCTCGATTTCCTGAATGTATGAGAGAGCTCAAGGACCCTCCCAGTTGAAAGGAGAAATTAAACATGTGCTCAAGGACCAAAACCGCAAACCATCCCCCATTCGATCCTCCTCTGGACATTACGTTCCCTGCCTTAACATCCAACCGCTTACGAGCTTCGATTAGTTGCCTGCACAAAAAGACAGAAACATTTACTCGGAGGGCATATTGATTGTCACCAAACATGACTTCCACGATGGCTAGAGCAGAATCGATGTCATTGAAATGCAGACCCAATGTTCCTTCGTCACAACCCTTTCCATCCTCATGATAAAGCCCTGCTCAAATGCCCAAACCCAAACGATGGCTAGACTTCTCACGATGAATAAGGGATGGGCTACTTATATGCCTCTAACGCTGAAACTGGAAACATGGGATCCAAAAATACATGGAAGAATGCTGGTTATGTCGTCTTATGGTGGATGGATTAAATTAAGGAACTTAGCTCTGTATTTAGTGAATGCAAATATCTTTAAAAAGACTGGTGACGTGTTTGGTGGGTTTTTGGACTTTGCTAATGAGAACTCCAGTCTTATCGAATGCTTGGAAGTTGTCATTAAAGTTAAAAGGGAATTATTGCAGATTTATTCCTACCGAATTTGAGTGGTTAAACGGTCCTGAATCTTTCCTGGTGCAGGTTATGACTCCTCTTATCATCTGTCATCAACAGAGTGGCCGAAAATCATGGCTCTTTCTCACAAGAGCAAGCTGC

mRNA sequence

TTATAAGGAGTTAATAAAGTATACATTATGTCTGTTTTTCCAACTCTATCACTTCAAGGTTGAGCAAAAGTGGTAATGGCTAAATTACCCATTTTTGTTGCAATTTATTTATACTAAATACCGTTGAATAAGGTGAGGAGTATCTTAGATTTGCAAGCCTTTGAATAAGTAGGCCACATAAATGTGTTAATAATGTTTTACCGCATCGCCGACGCTGGGATGAATAACTCTTCATCTCACGATGCTGCGGTCCAATGCCACTGCCCAGCCACCCACCTCTGTCACCTCGTCATCTTCGTTCGTTGATCTTGGAGAACCCTCTCCAAGACATAACTGCCTCAAGAAAGCTCTCAACAAGGATTGAGAACAAGTCCTTCACTTGCGAGTTCGACAGAAATAGTAATGGGAAAGAGATTCGGATATCAGAAGCTCACCAAATCAAAACTTACATGCTCACAGGAGAGGAAACTAACATTGTTTGGTTTATTAATTCTCTCGAGGAAGTCTTACAAGCCCCCAAGAACCCCAAAAAATTGAAGTCTTTGAAATGGAGGTCTTATCTAGGTACAACAAATGACTAACAAGAGAGGATGCTTCTTAGAAGTCACAAAAGTATTGAAATTTGGAAAAAAAAAAAAAGAAAAGGAAATTTAGTCATTCCTCCTAGCATTGATTTTAAAGGATGTTTTAGAAGCATGCTGCTCGATTTCCTGAATGTATGAGAGAGCTCAAGGACCCTCCCAGTTGAAAGGAGAAATTAAACATGTGCTCAAGGACCAAAACCGCAAACCATCCCCCATTCGATCCTCCTCTGGACATTACGTTCCCTGCCTTAACATCCAACCGCTTACGAGCTTCGATTAGTTGCCTGCACAAAAAGACAGAAACATTTACTCGGAGGGCATATTGATTGTCACCAAACATGACTTCCACGATGGCTAGAGCAGAATCGATGTCATTGAAATGCAGACCCAATGTTCCTTCGTCACAACCCTTTCCATCCTCATGATAAAGCCCTGCTCAAATGCCCAAACCCAAACGATGGCTAGACTTCTCACGATGAATAAGGGATGGGCTACTTATATGCCTCTAACGCTGAAACTGGAAACATGGGATCCAAAAATACATGGAAGAATGCTGGTTATGTCGTCTTATGGTGGATGGATTAAATTAAGGAACTTAGCTCTGTATTTAGTGAATGCAAATATCTTTAAAAAGACTGGTGACGTGTTTGGTGGGTTTTTGGACTTTGCTAATGAGAACTCCAGTCTTATCGAATGCTTGGAAGTTGTCATTAAAGTTAAAAGGGAATTATTGCAGATTTATTCCTACCGAATTTGAGTGGTTAAACGGTCCTGAATCTTTCCTGGTGCAGGTTATGACTCCTCTTATCATCTGTCATCAACAGAGTGGCCGAAAATCATGGCTCTTTCTCACAAGAGCAAGCTGC

Coding sequence (CDS)

ATGCAGACCCAATGTTCCTTCGTCACAACCCTTTCCATCCTCATGATAAAGCCCTGCTCAAATGCCCAAACCCAAACGATGGCTAGACTTCTCACGATGAATAAGGGATGGGCTACTTATATGCCTCTAACGCTGAAACTGGAAACATGGGATCCAAAAATACATGGAAGAATGCTGGTTATGTCGTCTTATGGTGGATGGATTAAATTAAGGAACTTAGCTCTGTATTTAGTGAATGCAAATATCTTTAAAAAGACTGGTGACGTGTTTGGTGGGTTTTTGGACTTTGCTAATGAGAACTCCAGTCTTATCGAATGCTTGGAAGTTGTCATTAAAGTTAAAAGGGAATTATTGCAGATTTATTCCTACCGAATTTGA

Protein sequence

MQTQCSFVTTLSILMIKPCSNAQTQTMARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKTGDVFGGFLDFANENSSLIECLEVVIKVKRELLQIYSYRI
Homology
[Close]
BLAST of Cmc03g0066131 vs. NCBI nr
Match: TYK01560.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-24
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0 

Query: 33  MNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKTGDVFGG 92
           MNKGWATY PLTLKLE W+PKIHGRML + SYGGWIKLRN   +L N  IFKK GD+  G
Sbjct: 1   MNKGWATYGPLTLKLE-WNPKIHGRMLFVPSYGGWIKLRNFPQHLWNEEIFKKVGDMLRG 60

Query: 93  FLDFANENSSLIECLEVVIKVK 115
           F+++  ENSSLI+C+EV IKVK
Sbjct: 61  FINYTKENSSLIDCVEVAIKVK 81

[Close]
BLAST of Cmc03g0066131 vs. NCBI nr
Match: XP_022149859.1 (uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncharacterized protein LOC111018186 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 0 

Query: 2   QTQCSFVTTLSILMIKPCSNAQTQTMARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVM 61
           QT+ S++        K      ++ +A LL  NKGW T+ P+T+KLE W+P +HGR  + 
Sbjct: 71  QTESSYIIN-PFQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKLEAWNPLLHGRAFLF 130

Query: 62  SSYGGWIKLRNLALYLVNANIFKKTGDVFGGFLDFANENSSLIECLEVVIKVK 115
            SYG W+K+RN+ L+L +   FK  G+  GGF+D+ + NS  IEC +V IKVK
Sbjct: 131 PSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIKVK 182

[Close]
BLAST of Cmc03g0066131 vs. NCBI nr
Match: KAA0041398.1 (hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W   +H    V+ SYGGW + R + L++ N N F   
Sbjct: 266 LAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHI 325

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+  GGF+D A E+ + IE  E +IKVK
Sbjct: 326 GEACGGFIDAAPESVNKIELTEALIKVK 353

[Close]
BLAST of Cmc03g0066131 vs. NCBI nr
Match: KAA0044449.1 (hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W    H    V+ SYGGW + R + L++ N N F + 
Sbjct: 241 LAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQI 300

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+ +GGF+D A E+ + +E  E +IKVK
Sbjct: 301 GEAYGGFIDAAPESVNKLELTEALIKVK 328

[Close]
BLAST of Cmc03g0066131 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W    H    V+ SYGGW + R + L++ N N F + 
Sbjct: 243 LAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQI 302

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+  GGF+D A E+ + IE  E +IKVK
Sbjct: 303 GEACGGFIDAAPESVNKIELTEALIKVK 330

[Close]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match: A0A5D3BR42 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001340 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0 

Query: 33  MNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKTGDVFGG 92
           MNKGWATY PLTLKLE W+PKIHGRML + SYGGWIKLRN   +L N  IFKK GD+  G
Sbjct: 1   MNKGWATYGPLTLKLE-WNPKIHGRMLFVPSYGGWIKLRNFPQHLWNEEIFKKVGDMLRG 60

Query: 93  FLDFANENSSLIECLEVVIKVK 115
           F+++  ENSSLI+C+EV IKVK
Sbjct: 61  FINYTKENSSLIDCVEVAIKVK 81

[Close]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match: A0A6J1D6X4 (uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018186 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 0 

Query: 2   QTQCSFVTTLSILMIKPCSNAQTQTMARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVM 61
           QT+ S++        K      ++ +A LL  NKGW T+ P+T+KLE W+P +HGR  + 
Sbjct: 71  QTESSYIIN-PFQADKALMKCPSKDLACLLLTNKGWVTFGPVTVKLEAWNPLLHGRAFLF 130

Query: 62  SSYGGWIKLRNLALYLVNANIFKKTGDVFGGFLDFANENSSLIECLEVVIKVK 115
            SYG W+K+RN+ L+L +   FK  G+  GGF+D+ + NS  IEC +V IKVK
Sbjct: 131 PSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIKVK 182

[Close]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match: A0A5A7TEP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00440 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-12
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W   +H    V+ SYGGW + R + L++ N N F   
Sbjct: 266 LAKLLCKNNGWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHI 325

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+  GGF+D A E+ + IE  E +IKVK
Sbjct: 326 GEACGGFIDAAPESVNKIELTEALIKVK 353

[Close]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match: A0A5D3E0Y8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001820 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W    H    V+ SYGGW + R + L++ N N F + 
Sbjct: 241 LAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQI 300

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+ +GGF+D A E+ + +E  E +IKVK
Sbjct: 301 GEAYGGFIDAAPESVNKLELTEALIKVK 328

[Close]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match: A0A5A7TTA1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001820 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 27  MARLLTMNKGWATYMPLTLKLETWDPKIHGRMLVMSSYGGWIKLRNLALYLVNANIFKKT 86
           +A+LL  N GW T  P  +K E W    H    V+ SYGGW + R + L++ N N F + 
Sbjct: 241 LAKLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLNTFIQI 300

Query: 87  GDVFGGFLDFANENSSLIECLEVVIKVK 115
           G+ +GGF+D A E+ + +E  E +IKVK
Sbjct: 301 GEAYGGFIDAAPESVNKLELTEALIKVK 328

The following BLAST results are available for this feature:
BLAST of Cmc03g0066131 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01560.15.8e-2469.51LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_022149859.12.1e-1842.48uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncha... [more]
KAA0041398.11.5e-1142.05hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa][more]
KAA0044449.12.5e-1140.91hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa][more]
KAA0044557.12.5e-1142.05hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa][more]
BLAST of Cmc03g0066131 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BR422.8e-2469.51LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1D6X41.0e-1842.48uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5A7TEP07.2e-1242.05DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E0Y81.2e-1140.91DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TTA11.2e-1140.91DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Cmc03g0066131 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0066131.1Cmc03g0066131.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
molecular_function GO:0003677 DNA binding
molecular_function GO:0004519 endonuclease activity