Cmc03g0065931 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0065931
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 7657394 .. 7657759 (+)
RNA-Seq Expression	Cmc03g0065931
Synteny	Cmc03g0065931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTAAAAGCTAGAGGGGGTTGTGAATACTTCATCTCTTTTATTGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTGTTGAAATGTTCAAGGAGTATAAAGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATCTAAACTCTCAACACCTGGTATACCTCAACAAAACGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGTATGTAG

mRNA sequence

ATGAATGTAAAAGCTAGAGGGGGTTGTGAATACTTCATCTCTTTTATTGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTGTTGAAATGTTCAAGGAGTATAAAGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATCTAAACTCTCAACACCTGGTATACCTCAACAAAACGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGTATGTAG

Coding sequence (CDS)

ATGAATGTAAAAGCTAGAGGGGGTTGTGAATACTTCATCTCTTTTATTGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTAAAGCTGTTGAAATGTTCAAGGAGTATAAAGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGAAATCCAATCTAAACTCTCAACACCTGGTATACCTCAACAAAACGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAATTGCCTAGCTCGTTTTGGGGTATGTAG

Protein sequence

MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGM

Homology

[Close]

BLAST of Cmc03g0065931 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 418 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 477

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 478 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]

BLAST of Cmc03g0065931 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. NCBI nr
Match: KAA0031924.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 1   MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 60

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 61  GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120

[Close]

BLAST of Cmc03g0065931 vs. NCBI nr
Match: TYK02840.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-26
Identity = 54/120 (45.00%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           M +++ GG +YF++FIDD SR  ++Y+++ K +  ++F+++ A VE    +K+K LRSD 
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEY    F++Y   H I+ + + PG PQ NGV+ER NRT+++ VRSM+  A+LP SFWG
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

[Close]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-16
Identity = 41/109 (37.61%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 11  YFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQ 70
           Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I  L SD GGE++ LR  
Sbjct: 523 YYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR-- 582

Query: 71  DYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFW 120
           DY+ +H I    S P  P+ NG+SER++R +++M  +++S+A +P ++W
Sbjct: 583 DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYW 629

[Close]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-15
Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 11  YFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQ 70
           YF+ F+D ++ Y   YL+++KS    MF+++ A+ E   + K+  L  D G EY+    +
Sbjct: 502 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 71  DYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 121
            + ++  I   L+ P  PQ NGVSER  RT+ +  R+M+S A+L  SFWG
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWG 611

[Close]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.2e-14
Identity = 37/109 (33.94%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 11  YFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDRGGEYMDLRFQ 70
           Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +I    SD GGE++ L   
Sbjct: 544 YYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--W 603

Query: 71  DYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFW 120
           +Y  +H I    S P  P+ NG+SER++R +++   +++S+A +P ++W
Sbjct: 604 EYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYW 650

[Close]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 31/111 (27.93%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 11  YFISFIDDYSRYGYLYLM--EHKSKAVEMFKEYKAEVENLLSKKIKILRSDRGGEYMDLR 70
           YFISF D+ +R+ ++Y +    +   + +F    A ++N  + ++ +++ DRG EY +  
Sbjct: 682 YFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKT 741

Query: 71  FQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFW 120
              +     I +  +T    + +GV+ER NRTLL+  R+++  + LP+  W
Sbjct: 742 LHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLW 792

[Close]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 418 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 477

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 478 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL
Match: A0A5D3BWT8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00440 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 292 MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 351

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 352 GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL
Match: A0A5A7SL69 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17366G00010 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MNVKARGGCEYFISFIDDYSRYGYLYLMEHKSKAVEMFKEYKAEVENLLSKKIKILRSDR 60
           MNVKARGG EYFISFIDDYSRYGYLYLMEHKS+A+E FKEYK EVENLLSKKIKILRSDR
Sbjct: 1   MNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDR 60

Query: 61  GGEYMDLRFQDYMIEHEIQSKLSTPGIPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120
           GGEYMDLRFQDYMIEH IQS+LS PG PQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG
Sbjct: 61  GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWG 120

The following BLAST results are available for this feature:

BLAST of Cmc03g0065931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	2.8e-55	92.50	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK04171.1	2.8e-55	92.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	2.8e-55	92.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0031924.1	2.8e-55	92.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02840.1	2.8e-55	92.50	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0065931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-26	45.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.0e-16	37.61	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.9e-15	37.27	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	7.2e-14	33.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.0e-08	27.93	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.3e-55	92.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	1.3e-55	92.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	1.3e-55	92.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3BWT8	1.3e-55	92.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G0044...	[more]
A0A5A7SL69	1.3e-55	92.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17366G00...	[more]

BLAST of Cmc03g0065931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..51
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 8..106
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 8..106
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..121 e-value: 1.9E-26 score: 94.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 3..88 e-value: 2.5E-9 score: 37.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..121 score: 17.747566
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0065931.1	Cmc03g0065931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding