Cmc03g0063301 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0063301
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr03: 3752643 .. 3753185 (-)
RNA-Seq ExpressionCmc03g0063301
SyntenyCmc03g0063301
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATATATCGACAAGGTACTGAATTTCTGATAGTGCAGATCTATGTTGACGACATTATATTTAGTGGGACTGCATATGTTGAACAGTTTGTTAATCAGATGAAGGGAGAATTTGAAATGAGCATGGTTGGTAAACTAACATTCTTTCTAGGATTTCAAATTAAGCAAGACAAGACAAGAATCTTCTTTTCTCAAGAAAAATATGCAAAAAATCTCATCTCGAAGTTTGGAATGGATAAGACCAAACCCAAACGAACACCAGCTGCTACTCATTTGAAATTAACAAAGGATGCCACTAGAGAAAAGGTTGATTCAAGTTTATACAGAAGTATCTTTGGTAGTTTACTCTACTTAACAGCCAGCAGATCAGATATAGCTTTTGCAGTAGGCGTGTGTGCGTGTTATCAGGCTGACCCTCGAACGTCTCATCTTCACAGTATTAAATGCATACTGAAATATATAATAGGTACGTGTAATTTCGGTCTCTGGTATACTTTTGATACAACTGAAGTTCTTGTAGGGTACTGTGATGCTGACTAG

mRNA sequence

ATGTTCATATATCGACAAGGTACTGAATTTCTGATAGTGCAGATCTATGTTGACGACATTATATTTAGTGGGACTGCATATGTTGAACAGTTTGTTAATCAGATGAAGGGAGAATTTGAAATGAGCATGGTTGGTAAACTAACATTCTTTCTAGGATTTCAAATTAAGCAAGACAAGACAAGAATCTTCTTTTCTCAAGAAAAATATGCAAAAAATCTCATCTCGAAGTTTGGAATGGATAAGACCAAACCCAAACGAACACCAGCTGCTACTCATTTGAAATTAACAAAGGATGCCACTAGAGAAAAGGTTGATTCAAGTTTATACAGAAGTATCTTTGGTAGTTTACTCTACTTAACAGCCAGCAGATCAGATATAGCTTTTGCAGTAGGCGTGTGTGCGTGTTATCAGGCTGACCCTCGAACGTCTCATCTTCACAGTATTAAATGCATACTGAAATATATAATAGGTACGTGTAATTTCGGTCTCTGGTATACTTTTGATACAACTGAAGTTCTTGTAGGGTACTGTGATGCTGACTAG

Coding sequence (CDS)

ATGTTCATATATCGACAAGGTACTGAATTTCTGATAGTGCAGATCTATGTTGACGACATTATATTTAGTGGGACTGCATATGTTGAACAGTTTGTTAATCAGATGAAGGGAGAATTTGAAATGAGCATGGTTGGTAAACTAACATTCTTTCTAGGATTTCAAATTAAGCAAGACAAGACAAGAATCTTCTTTTCTCAAGAAAAATATGCAAAAAATCTCATCTCGAAGTTTGGAATGGATAAGACCAAACCCAAACGAACACCAGCTGCTACTCATTTGAAATTAACAAAGGATGCCACTAGAGAAAAGGTTGATTCAAGTTTATACAGAAGTATCTTTGGTAGTTTACTCTACTTAACAGCCAGCAGATCAGATATAGCTTTTGCAGTAGGCGTGTGTGCGTGTTATCAGGCTGACCCTCGAACGTCTCATCTTCACAGTATTAAATGCATACTGAAATATATAATAGGTACGTGTAATTTCGGTCTCTGGTATACTTTTGATACAACTGAAGTTCTTGTAGGGTACTGTGATGCTGACTAG

Protein sequence

MFIYRQGTEFLIVQIYVDDIIFSGTAYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD
Homology
BLAST of Cmc03g0063301 vs. NCBI nr
Match: KAA0038150.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK20453.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 2.4e-71
Identity = 144/170 (84.71%), Postives = 152/170 (89.41%), Query Frame = 0

Query: 13  VQIYVDDIIFSGT--AYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYA 72
           VQIYV+DIIF GT  AYV+QFVNQMKGEFEMSMVG+LTFF+GFQIKQD+T IFFSQEKYA
Sbjct: 147 VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIGFQIKQDETGIFFSQEKYA 206

Query: 73  KNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAV 132
           KNLISKF MDK KPK+TPAATHLKLTKDAT E+VDSSLYRSI GSLL L ASR DIAFAV
Sbjct: 207 KNLISKFRMDKAKPKQTPAATHLKLTKDATEEQVDSSLYRSIIGSLLNLIASRPDIAFAV 266

Query: 133 GVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           G+CA YQADPRTSHL S K ILKYIIGTCNF LWYTFDTT VLV YCDAD
Sbjct: 267 GMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTTGVLVRYCDAD 316

BLAST of Cmc03g0063301 vs. NCBI nr
Match: KAA0056162.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 7.0e-71
Identity = 146/170 (85.88%), Postives = 149/170 (87.65%), Query Frame = 0

Query: 13  VQIYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYA 72
           VQIYVDDIIF GT+  YVEQFVNQMKGEFE+SMVG+LTFFLGFQIKQ KTRIFFSQEKYA
Sbjct: 342 VQIYVDDIIFGGTSSTYVEQFVNQMKGEFEISMVGELTFFLGFQIKQYKTRIFFSQEKYA 401

Query: 73  KNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAV 132
           KNLISKFGMDK KP         KLTKDATREKVDSSLYRSI GSLLYLTASR DIAF V
Sbjct: 402 KNLISKFGMDKAKP---------KLTKDATREKVDSSLYRSIIGSLLYLTASRPDIAFTV 461

Query: 133 GVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           GVCA YQAD RTSHLHS K ILKYIIGTCNFGLWYTFDTTEVLVGYCDAD
Sbjct: 462 GVCARYQADRRTSHLHSAKRILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 502

BLAST of Cmc03g0063301 vs. NCBI nr
Match: TYJ96981.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 8.9e-66
Identity = 131/168 (77.98%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDIIF GT+  YVEQFV QM  EFEMSMVG+LTFFLGFQIKQ+ T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVGV 134
           LISKFGMDK +PKRTPAA HLK+TKD   EKVD++LYRSI GSLLYLTASR DIAF VGV
Sbjct: 61  LISKFGMDKARPKRTPAAIHLKMTKDTNGEKVDTNLYRSIIGSLLYLTASRLDIAFVVGV 120

Query: 135 CACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           CA YQADP TSHLHS K ILKYI GT N+G+WYT+DTT  LVGYCDAD
Sbjct: 121 CARYQADPHTSHLHSAKRILKYISGTFNYGIWYTYDTTGTLVGYCDAD 168

BLAST of Cmc03g0063301 vs. NCBI nr
Match: KAA0038409.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 129/168 (76.79%), Postives = 141/168 (83.93%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDIIF GT+  YVEQFV QM  EFEMSMVG+LTFFLGFQIKQ+ T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVGV 134
           LISKFGMDK +PKRTPAATHLK+TKD   EKVD++LYRSI GSLLYL ASR DIAFAVGV
Sbjct: 61  LISKFGMDKARPKRTPAATHLKMTKDTNGEKVDTNLYRSIIGSLLYLIASRPDIAFAVGV 120

Query: 135 CACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
            A YQADP  SHLHS K ILKYI  T N+G+WYT+DTT  LVGYCDAD
Sbjct: 121 YARYQADPHMSHLHSAKRILKYISDTFNYGIWYTYDTTGTLVGYCDAD 168

BLAST of Cmc03g0063301 vs. NCBI nr
Match: KAA0065488.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 3.5e-62
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 14  QIYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAK 73
           +IYVDDIIF  T+  YV +FV QMKGEFEM+MVG+LTFFLGFQI+Q++T IFFSQEKYAK
Sbjct: 38  KIYVDDIIFRRTSLDYVVKFVRQMKGEFEMTMVGELTFFLGFQIRQEETSIFFSQEKYAK 97

Query: 74  NLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVG 133
           NLISKFGMDK KPKRTP  THLK+TKD T EKVDSSL++SI  SLLYLTASR DIAFAVG
Sbjct: 98  NLISKFGMDKAKPKRTPTTTHLKMTKDTTGEKVDSSLHQSIIRSLLYLTASRPDIAFAVG 157

Query: 134 VCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVG 176
           VCA Y+ADPRTSHLHS K ILKYI  T  +GLWYTFDTT VLVG
Sbjct: 158 VCARYRADPRTSHLHSTKRILKYITSTFKYGLWYTFDTTGVLVG 201

BLAST of Cmc03g0063301 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 58/182 (31.87%), Postives = 97/182 (53.30%), Query Frame = 0

Query: 1    MFIYRQGTEFLIVQIYVDDIIFSGT--AYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQD 60
            +F+ ++G   + + +YVDDI+ +G     +   ++ +   F +    +L +FLG + K+ 
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRV 1194

Query: 61   KTRIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLY 120
             T +  SQ +Y  +L+++  M   KP  TP A   KL+  +  +  D + YR I GSL Y
Sbjct: 1195 PTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQY 1254

Query: 121  LTASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCD 180
            L  +R DI++AV   + +   P   HL ++K IL+Y+ GT N G++     T  L  Y D
Sbjct: 1255 LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSD 1314

BLAST of Cmc03g0063301 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 57/182 (31.32%), Postives = 98/182 (53.85%), Query Frame = 0

Query: 1    MFIYRQGTEFLIVQIYVDDIIFSG--TAYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQD 60
            +F+ ++G   + + +YVDDI+ +G  T  ++  ++ +   F +     L +FLG + K+ 
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRV 1177

Query: 61   KTRIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLY 120
               +  SQ +Y  +L+++  M   KP  TP AT  KLT  +  +  D + YR I GSL Y
Sbjct: 1178 PQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQY 1237

Query: 121  LTASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCD 180
            L  +R D+++AV   + Y   P   H +++K +L+Y+ GT + G++     T  L  Y D
Sbjct: 1238 LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSD 1297

BLAST of Cmc03g0063301 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-19
Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDI+ +G++   +   + Q+   F M  +G + +FLG QIK   + +F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKV-DSSLYRSIFGSLLYLTASRSDIAFAVG 134
           +++  GM   KP  TP    LKL    +  K  D S +RSI G+L YLT +R DI++AV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 135 VCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           +      +P  +    +K +L+Y+ GT   GL+   ++   +  +CD+D
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 171

BLAST of Cmc03g0063301 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-18
Identity = 61/182 (33.52%), Postives = 97/182 (53.30%), Query Frame = 0

Query: 10   FLIVQIYVDDIIFSG--TAYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKT--RIFFS 69
            F+I+ +YVDD++  G     + +    +   F+M  +G     LG +I +++T  +++ S
Sbjct: 1002 FIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLS 1061

Query: 70   QEKYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSS------LYRSIFGSLLY- 129
            QEKY + ++ +F M   KP  TP A HLKL+K      V+         Y S  GSL+Y 
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYA 1121

Query: 130  LTASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCD 181
            +  +R DIA AVGV + +  +P   H  ++K IL+Y+ GT    L +   +  +L GY D
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTD 1181

BLAST of Cmc03g0063301 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-09
Identity = 46/173 (26.59%), Postives = 82/173 (47.40%), Query Frame = 0

Query: 11  LIVQIYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKT-RIFFSQE 70
           + + +YVDD++ +  +    ++   ++   + M  +GK+  FLG  I Q     I  S +
Sbjct: 82  IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQ 141

Query: 71  KYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLY-LTASRSDI 130
            Y     S+  ++  K  +TP      L +  +    D + Y+SI G LL+     R DI
Sbjct: 142 DYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDI 201

Query: 131 AFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDA 180
           ++ V + + +  +PR  HL S + +L+Y+  T +  L Y   +   L  YCDA
Sbjct: 202 SYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDA 254

BLAST of Cmc03g0063301 vs. ExPASy TrEMBL
Match: A0A5D3DA69 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00200 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 144/170 (84.71%), Postives = 152/170 (89.41%), Query Frame = 0

Query: 13  VQIYVDDIIFSGT--AYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYA 72
           VQIYV+DIIF GT  AYV+QFVNQMKGEFEMSMVG+LTFF+GFQIKQD+T IFFSQEKYA
Sbjct: 147 VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIGFQIKQDETGIFFSQEKYA 206

Query: 73  KNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAV 132
           KNLISKF MDK KPK+TPAATHLKLTKDAT E+VDSSLYRSI GSLL L ASR DIAFAV
Sbjct: 207 KNLISKFRMDKAKPKQTPAATHLKLTKDATEEQVDSSLYRSIIGSLLNLIASRPDIAFAV 266

Query: 133 GVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           G+CA YQADPRTSHL S K ILKYIIGTCNF LWYTFDTT VLV YCDAD
Sbjct: 267 GMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTTGVLVRYCDAD 316

BLAST of Cmc03g0063301 vs. ExPASy TrEMBL
Match: A0A5A7UJW3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00540 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.4e-71
Identity = 146/170 (85.88%), Postives = 149/170 (87.65%), Query Frame = 0

Query: 13  VQIYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYA 72
           VQIYVDDIIF GT+  YVEQFVNQMKGEFE+SMVG+LTFFLGFQIKQ KTRIFFSQEKYA
Sbjct: 342 VQIYVDDIIFGGTSSTYVEQFVNQMKGEFEISMVGELTFFLGFQIKQYKTRIFFSQEKYA 401

Query: 73  KNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAV 132
           KNLISKFGMDK KP         KLTKDATREKVDSSLYRSI GSLLYLTASR DIAF V
Sbjct: 402 KNLISKFGMDKAKP---------KLTKDATREKVDSSLYRSIIGSLLYLTASRPDIAFTV 461

Query: 133 GVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           GVCA YQAD RTSHLHS K ILKYIIGTCNFGLWYTFDTTEVLVGYCDAD
Sbjct: 462 GVCARYQADRRTSHLHSAKRILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 502

BLAST of Cmc03g0063301 vs. ExPASy TrEMBL
Match: A0A5D3BEA0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00260 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 131/168 (77.98%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDIIF GT+  YVEQFV QM  EFEMSMVG+LTFFLGFQIKQ+ T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVGV 134
           LISKFGMDK +PKRTPAA HLK+TKD   EKVD++LYRSI GSLLYLTASR DIAF VGV
Sbjct: 61  LISKFGMDKARPKRTPAAIHLKMTKDTNGEKVDTNLYRSIIGSLLYLTASRLDIAFVVGV 120

Query: 135 CACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           CA YQADP TSHLHS K ILKYI GT N+G+WYT+DTT  LVGYCDAD
Sbjct: 121 CARYQADPHTSHLHSAKRILKYISGTFNYGIWYTYDTTGTLVGYCDAD 168

BLAST of Cmc03g0063301 vs. ExPASy TrEMBL
Match: A0A5A7TAN0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003070 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.9e-64
Identity = 129/168 (76.79%), Postives = 141/168 (83.93%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDIIF GT+  YVEQFV QM  EFEMSMVG+LTFFLGFQIKQ+ T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVGV 134
           LISKFGMDK +PKRTPAATHLK+TKD   EKVD++LYRSI GSLLYL ASR DIAFAVGV
Sbjct: 61  LISKFGMDKARPKRTPAATHLKMTKDTNGEKVDTNLYRSIIGSLLYLIASRPDIAFAVGV 120

Query: 135 CACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
            A YQADP  SHLHS K ILKYI  T N+G+WYT+DTT  LVGYCDAD
Sbjct: 121 YARYQADPHMSHLHSAKRILKYISDTFNYGIWYTYDTTGTLVGYCDAD 168

BLAST of Cmc03g0063301 vs. ExPASy TrEMBL
Match: A0A5A7VCX5 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00340 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 14  QIYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAK 73
           +IYVDDIIF  T+  YV +FV QMKGEFEM+MVG+LTFFLGFQI+Q++T IFFSQEKYAK
Sbjct: 38  KIYVDDIIFRRTSLDYVVKFVRQMKGEFEMTMVGELTFFLGFQIRQEETSIFFSQEKYAK 97

Query: 74  NLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYLTASRSDIAFAVG 133
           NLISKFGMDK KPKRTP  THLK+TKD T EKVDSSL++SI  SLLYLTASR DIAFAVG
Sbjct: 98  NLISKFGMDKAKPKRTPTTTHLKMTKDTTGEKVDSSLHQSIIRSLLYLTASRPDIAFAVG 157

Query: 134 VCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVG 176
           VCA Y+ADPRTSHLHS K ILKYI  T  +GLWYTFDTT VLVG
Sbjct: 158 VCARYRADPRTSHLHSTKRILKYITSTFKYGLWYTFDTTGVLVG 201

BLAST of Cmc03g0063301 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.8 bits (242), Expect = 9.3e-21
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 0

Query: 2   FIYRQGTEFLIVQIYVDDIIF--SGTAYVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDK 61
           F+    T FL V +YVDDII   +  A V++  +Q+K  F++  +G L +FLG +I +  
Sbjct: 269 FLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSA 328

Query: 62  TRIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKLTKDATREKVDSSLYRSIFGSLLYL 121
             I   Q KYA +L+ + G+   KP   P    +  +  +  + VD+  YR + G L+YL
Sbjct: 329 AGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL 388

Query: 122 TASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDA 180
             +R DI+FAV   + +   PR +H  ++  IL YI GT   GL+Y+      L  + DA
Sbjct: 389 QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448

BLAST of Cmc03g0063301 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-20
Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 0

Query: 15  IYVDDIIFSGTA--YVEQFVNQMKGEFEMSMVGKLTFFLGFQIKQDKTRIFFSQEKYAKN 74
           +YVDDI+ +G++   +   + Q+   F M  +G + +FLG QIK   + +F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LISKFGMDKTKPKRTPAATHLKLTKDATREKV-DSSLYRSIFGSLLYLTASRSDIAFAVG 134
           +++  GM   KP  TP    LKL    +  K  D S +RSI G+L YLT +R DI++AV 
Sbjct: 65  ILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 135 VCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGYCDAD 181
           +      +P  +    +K +L+Y+ GT   GL+   ++   +  +CD+D
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSD 171

BLAST of Cmc03g0063301 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 20/64 (31.25%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 117 LYLTASRSDIAFAVGVCACYQADPRTSHLHSIKCILKYIIGTCNFGLWYTFDTTEVLVGY 176
           +YLT +R D+ FAV   + + +  RT+ + ++  +L Y+ GT   GL+Y+  +   L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 177 CDAD 181
            D+D
Sbjct: 61  ADSD 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038150.12.4e-7184.71putative mitochondrial protein [Cucumis melo var. makuwa] >TYK20453.1 putative m... [more]
KAA0056162.17.0e-7185.88putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYJ96981.18.9e-6677.98putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0038409.11.4e-6376.79putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0065488.13.5e-6278.05putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag... [more]
Match NameE-valueIdentityDescription
Q94HW21.7e-1931.87Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.7e-1931.32Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925192.2e-1934.32Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P109785.5e-1833.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P256002.7e-0926.59Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5D3DA691.2e-7184.71Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UJW33.4e-7185.88Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BEA04.3e-6677.98Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TAN06.9e-6476.79Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7VCX51.7e-6278.05Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
AT4G23160.19.3e-2133.89cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.6e-2034.32DNA/RNA polymerases superfamily protein [more]
ATMG00240.12.1e-0431.25Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..89
e-value: 1.3E-15
score: 57.7
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 4..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0063301.1Cmc03g0063301.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding