Cmc03g0063181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0063181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 3581611 .. 3584101 (-)
RNA-Seq Expression	Cmc03g0063181
Synteny	Cmc03g0063181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTTATCCTGACCCGACCTGGATATAATATAATATATATATATATATATATATATATATACCCTAAATACTTTAGGTCCTTCTTAGACTTCACTTTTTAGTCTTCAGCCATTTGATCAGTAGACTGTCATCCCACCTTGTTCACCAACCGACGACCAGCGCTCCCAATCCACACTCAAATCCCATCCCACATCCTTCTTCCGCAATCGACACTTCGCAGACTTCACTTCGTAGCTCCAAGTCTCGAATCCCATCCCACCTTCTTCATCGTCTAACCCCCATCCCACGTCCTTCTTTGGCTCTTTGCATTCATAGCCGATTTCTAGCTCATTTGTCGAAATTTCACCTAGTTGTCCACCCTCCATTCGTCCGCCCTCGTTCGCTCTCCTACCGACACTTTAGATTTGGTGTTGAATTTGGATTCTACTTACACTTTGGTAAGTTGATTATTTTAAATTTATATCTATTATTAATAGTTTGTTTATGGTTAATTTCCAAAGTATTGGATATTCATTTTCATATTTTGTTTCCTTGTATCTAATTTTAGTAGTTTGTTTGTGGTTATTGTGGTGATATCTCATGCCCTACCTCAATTGTCATGCCCTGCGATCAAATGGAGGATGTGTCGCTTAGACGTTAAGCGCATATTCCTTTTCTAGGATGAAGCGCCAACCGTCTAGTAAGCAGAACAAATCGATACTTTAAAAATTTAGACGCGGAAGGTAGACTTTGAAGAAAGGAGAATACTTCATTAATGTAGTTAAAATAGTACAAGTGGCCATGGGTACTTAAGTCCCTTCAAAAGAAATGAAATACAACTAACTAGACTTACTCGTGTAACCTCTACATGCTATGCAAAAAGACATTGACTACTACCAAAACGATGCGATTTCAAGGACAGAAGGCGATCACGACTACAAGTTCAACACTTGATGTCCCTCGCTAACTGGAAGGGGGGAATGAAACAAAAGTTTGAAAGGCTAGATGAAAACGTCTAGTGAGTGGGGTCTTTTATCTTTTACTATTAAACAAATCAAGTTGTCAAATGACCTTATGAGAAAATTGGTTATATCAAAGGTAACTTCATCATTTCACAATTCTTCATATCACATGTCTTAAGCATGCTGAATATTTATTTTATATAATCATTCTACACATTTGGTTTACACATTTATACCCTTTTTCCTCGGCTCGAGTGTTTACTACACTCTTTTACCCAGTTATAGCCATGTAGAGTAAACTCAACGCATTAGCAATGCCCATCAATTTCACTACGTGTTAATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAGCTTATCTCAAAACATAACATTAGGTATCAACACTTAACGCATGTAATGATACAATATTTAGAACGTTAACTCACCCCATGTCAACATAAAGTTATTCACAGAACACATTGTCACATATTGTTTTCATCAGTGAACTTACTTACGACGGTAGTAGAAAAACATGCAAAACATTTCACATCATGCATAAACTCGAAAGGAGCTAGTAAAGCATTAAATAAGAGTTAGAAACTCTTTTTCTTATTGCAAAAACTTTTAAGAAAACCACTCACTATTACAGTCGGCCCTTTTAGCTTCTTTAGTCAAGGTCCCTTTGTTGGTTCTAGAATTCTGATCAGAATGAGCTTGCTCCTTGCCTCAAATCCTTAAGCACCTTCAAATTTTCTCTTTCTTAACAAGATCAGGGTAAGAATTTTTTTCAGATGATTCGTGCTTTTTATTTATAGATATTTCTAGGCTGGTCTCTTTATACTAAAATGATTTCCCTAACCAGCTACGAAAAGTGGCCCAATCCGAACATGCCACGTGCCTCTAACATGTCTTATCCTAAACTCAAGTTAGGCAGTCAGGTCCCGTCAATCACTGACCTACTATCTTTTACATCACATCACCATCCCTAGGTGAATTAGATTGACTTTACTCATCCGATTGTCGAGCCCCCTTCTGGCATCAAGGTTCTTATCGCGATTTAACCATAACTAACAGTTCCACGATCAAGAAATCTCTTTGCATATCATTTTTATCGCAAGGCTTTTCGTCGCATTAGCTACATGCGATCAAGGCCTTACATGATACTTTTATATGTTTTATGTCTTTGAACACAATATGCTCAAAATGTTCCACACAACCCAAAGGTATTTGATTTACAGTAATTGTTTGATGTTTTCCTATAGGTTAAGAGATGAAAGTGGACATATAATTTGGTATTAATCTACAGTAAAGTGGACATTCGTTTTGACCTTGTTATTGATTTTCATTTT

mRNA sequence

GGGTTATCCTGACCCGACCTGGATATAATATAATATATATATATATATATATATATATATACCCTAAATACTTTAGGTCCTTCTTAGACTTCACTTTTTAGTCTTCAGCCATTTGATCAGTAGACTGTCATCCCACCTTGTTCACCAACCGACGACCAGCGCTCCCAATCCACACTCAAATCCCATCCCACATCCTTCTTCCGCAATCGACACTTCGCAGACTTCACTTCGTAGCTCCAAGTCTCGAATCCCATCCCACCTTCTTCATCGTCTAACCCCCATCCCACGTCCTTCTTTGGCTCTTTGCATTCATAGCCGATTTCTAGCTCATTTGTCGAAATTTCACCTAGTTGTCCACCCTCCATTCGTCCGCCCTCGTTCGCTCTCCTACCGACACTTTAGATTTGGTGTTGAATTTGGATTCTACTTACACTTTGTTTGTTTGTGGTTATTGTGGTGATATCTCATGCCCTACCTCAATTGTCATGCCCTGCGATCAAATGGAGGATGTGTCGCTTAGACGTTAAGCGCATATTCCTTTTCTAGGATGAAGCGCCAACCGTCTAGTAAGCAGAACAAATCGATACTTTAAAAATTTAGACGCGGAAGGTAGACTTTGAAGAAAGGAGAATACTTCATTAATGTAGTTAAAATAGTACAAGTGGCCATGGGTACTTAAGTCCCTTCAAAAGAAATGAAATACAACTAACTAGACTTACTCGTGTAACCTCTACATGCTATGCAAAAAGACATTGACTACTACCAAAACGATGCGATTTCAAGGACAGAAGGCGATCACGACTACAAGTTCAACACTTGATGTCCCTCGCTAACTGGAAGGGGGGAATGAAACAAAAGTTTGAAAGGCTAGATGAAAACGTCTAGTGAGTGGGGTCTTTTATCTTTTACTATTAAACAAATCAAGTTGTCAAATGACCTTATGAGAAAATTGGTTATATCAAAGGTAACTTCATCATTTCACAATTCTTCATATCACATGTCTTAAGCATGCTGAATATTTATTTTATATAATCATTCTACACATTTGGTTTACACATTTATACCCTTTTTCCTCGGCTCGAGTGTTTACTACACTCTTTTACCCAGTTATAGCCATGTAGAGTAAACTCAACGCATTAGCAATGCCCATCAATTTCACTACGTGTTAATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAAGAGATGAAAGTGGACATATAATTTGGTATTAATCTACAGTAAAGTGGACATTCGTTTTGACCTTGTTATTGATTTTCATTTT

Coding sequence (CDS)

ATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAAGAGATGA

Protein sequence

MSSNAILHNKQRASSNARSYSKCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDKASHHQGYKVKR

Homology

[Close]

BLAST of Cmc03g0063181 vs. NCBI nr
Match: KAA0063175.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10  KQRASSNARSYS-KCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDK 69
           K   SSNARS+S K  A Y      NR F+SRSH  N TSYP S +KGKTSY  SY+KD+
Sbjct: 92  KHYTSSNARSHSNKNIAFYFISRIKNRAFFSRSHIKNKTSYPKSPSKGKTSYLTSYSKDE 151

Query: 70  ASHHQGYKV 78
           AS HQGYKV
Sbjct: 152 ASRHQGYKV 160

[Close]

BLAST of Cmc03g0063181 vs. ExPASy TrEMBL
Match: A0A5A7VB93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00630 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.9e-08
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10  KQRASSNARSYS-KCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDK 69
           K   SSNARS+S K  A Y      NR F+SRSH  N TSYP S +KGKTSY  SY+KD+
Sbjct: 92  KHYTSSNARSHSNKNIAFYFISRIKNRAFFSRSHIKNKTSYPKSPSKGKTSYLTSYSKDE 151

Query: 70  ASHHQGYKV 78
           AS HQGYKV
Sbjct: 152 ASRHQGYKV 160

The following BLAST results are available for this feature:

BLAST of Cmc03g0063181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063175.1	1.8e-07	60.87	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0063181 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0063181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VB93	8.9e-08	60.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G0063...	[more]

BLAST of Cmc03g0063181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0063181.1	Cmc03g0063181.1	mRNA