Cmc03g0063181 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0063181
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr03: 3581611 .. 3584101 (-)
RNA-Seq ExpressionCmc03g0063181
SyntenyCmc03g0063181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTATCCTGACCCGACCTGGATATAATATAATATATATATATATATATATATATATATACCCTAAATACTTTAGGTCCTTCTTAGACTTCACTTTTTAGTCTTCAGCCATTTGATCAGTAGACTGTCATCCCACCTTGTTCACCAACCGACGACCAGCGCTCCCAATCCACACTCAAATCCCATCCCACATCCTTCTTCCGCAATCGACACTTCGCAGACTTCACTTCGTAGCTCCAAGTCTCGAATCCCATCCCACCTTCTTCATCGTCTAACCCCCATCCCACGTCCTTCTTTGGCTCTTTGCATTCATAGCCGATTTCTAGCTCATTTGTCGAAATTTCACCTAGTTGTCCACCCTCCATTCGTCCGCCCTCGTTCGCTCTCCTACCGACACTTTAGATTTGGTGTTGAATTTGGATTCTACTTACACTTTGGTAAGTTGATTATTTTAAATTTATATCTATTATTAATAGTTTGTTTATGGTTAATTTCCAAAGTATTGGATATTCATTTTCATATTTTGTTTCCTTGTATCTAATTTTAGTAGTTTGTTTGTGGTTATTGTGGTGATATCTCATGCCCTACCTCAATTGTCATGCCCTGCGATCAAATGGAGGATGTGTCGCTTAGACGTTAAGCGCATATTCCTTTTCTAGGATGAAGCGCCAACCGTCTAGTAAGCAGAACAAATCGATACTTTAAAAATTTAGACGCGGAAGGTAGACTTTGAAGAAAGGAGAATACTTCATTAATGTAGTTAAAATAGTACAAGTGGCCATGGGTACTTAAGTCCCTTCAAAAGAAATGAAATACAACTAACTAGACTTACTCGTGTAACCTCTACATGCTATGCAAAAAGACATTGACTACTACCAAAACGATGCGATTTCAAGGACAGAAGGCGATCACGACTACAAGTTCAACACTTGATGTCCCTCGCTAACTGGAAGGGGGGAATGAAACAAAAGTTTGAAAGGCTAGATGAAAACGTCTAGTGAGTGGGGTCTTTTATCTTTTACTATTAAACAAATCAAGTTGTCAAATGACCTTATGAGAAAATTGGTTATATCAAAGGTAACTTCATCATTTCACAATTCTTCATATCACATGTCTTAAGCATGCTGAATATTTATTTTATATAATCATTCTACACATTTGGTTTACACATTTATACCCTTTTTCCTCGGCTCGAGTGTTTACTACACTCTTTTACCCAGTTATAGCCATGTAGAGTAAACTCAACGCATTAGCAATGCCCATCAATTTCACTACGTGTTAATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAGCTTATCTCAAAACATAACATTAGGTATCAACACTTAACGCATGTAATGATACAATATTTAGAACGTTAACTCACCCCATGTCAACATAAAGTTATTCACAGAACACATTGTCACATATTGTTTTCATCAGTGAACTTACTTACGACGGTAGTAGAAAAACATGCAAAACATTTCACATCATGCATAAACTCGAAAGGAGCTAGTAAAGCATTAAATAAGAGTTAGAAACTCTTTTTCTTATTGCAAAAACTTTTAAGAAAACCACTCACTATTACAGTCGGCCCTTTTAGCTTCTTTAGTCAAGGTCCCTTTGTTGGTTCTAGAATTCTGATCAGAATGAGCTTGCTCCTTGCCTCAAATCCTTAAGCACCTTCAAATTTTCTCTTTCTTAACAAGATCAGGGTAAGAATTTTTTTCAGATGATTCGTGCTTTTTATTTATAGATATTTCTAGGCTGGTCTCTTTATACTAAAATGATTTCCCTAACCAGCTACGAAAAGTGGCCCAATCCGAACATGCCACGTGCCTCTAACATGTCTTATCCTAAACTCAAGTTAGGCAGTCAGGTCCCGTCAATCACTGACCTACTATCTTTTACATCACATCACCATCCCTAGGTGAATTAGATTGACTTTACTCATCCGATTGTCGAGCCCCCTTCTGGCATCAAGGTTCTTATCGCGATTTAACCATAACTAACAGTTCCACGATCAAGAAATCTCTTTGCATATCATTTTTATCGCAAGGCTTTTCGTCGCATTAGCTACATGCGATCAAGGCCTTACATGATACTTTTATATGTTTTATGTCTTTGAACACAATATGCTCAAAATGTTCCACACAACCCAAAGGTATTTGATTTACAGTAATTGTTTGATGTTTTCCTATAGGTTAAGAGATGAAAGTGGACATATAATTTGGTATTAATCTACAGTAAAGTGGACATTCGTTTTGACCTTGTTATTGATTTTCATTTT

mRNA sequence

GGGTTATCCTGACCCGACCTGGATATAATATAATATATATATATATATATATATATATATACCCTAAATACTTTAGGTCCTTCTTAGACTTCACTTTTTAGTCTTCAGCCATTTGATCAGTAGACTGTCATCCCACCTTGTTCACCAACCGACGACCAGCGCTCCCAATCCACACTCAAATCCCATCCCACATCCTTCTTCCGCAATCGACACTTCGCAGACTTCACTTCGTAGCTCCAAGTCTCGAATCCCATCCCACCTTCTTCATCGTCTAACCCCCATCCCACGTCCTTCTTTGGCTCTTTGCATTCATAGCCGATTTCTAGCTCATTTGTCGAAATTTCACCTAGTTGTCCACCCTCCATTCGTCCGCCCTCGTTCGCTCTCCTACCGACACTTTAGATTTGGTGTTGAATTTGGATTCTACTTACACTTTGTTTGTTTGTGGTTATTGTGGTGATATCTCATGCCCTACCTCAATTGTCATGCCCTGCGATCAAATGGAGGATGTGTCGCTTAGACGTTAAGCGCATATTCCTTTTCTAGGATGAAGCGCCAACCGTCTAGTAAGCAGAACAAATCGATACTTTAAAAATTTAGACGCGGAAGGTAGACTTTGAAGAAAGGAGAATACTTCATTAATGTAGTTAAAATAGTACAAGTGGCCATGGGTACTTAAGTCCCTTCAAAAGAAATGAAATACAACTAACTAGACTTACTCGTGTAACCTCTACATGCTATGCAAAAAGACATTGACTACTACCAAAACGATGCGATTTCAAGGACAGAAGGCGATCACGACTACAAGTTCAACACTTGATGTCCCTCGCTAACTGGAAGGGGGGAATGAAACAAAAGTTTGAAAGGCTAGATGAAAACGTCTAGTGAGTGGGGTCTTTTATCTTTTACTATTAAACAAATCAAGTTGTCAAATGACCTTATGAGAAAATTGGTTATATCAAAGGTAACTTCATCATTTCACAATTCTTCATATCACATGTCTTAAGCATGCTGAATATTTATTTTATATAATCATTCTACACATTTGGTTTACACATTTATACCCTTTTTCCTCGGCTCGAGTGTTTACTACACTCTTTTACCCAGTTATAGCCATGTAGAGTAAACTCAACGCATTAGCAATGCCCATCAATTTCACTACGTGTTAATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAAGAGATGAAAGTGGACATATAATTTGGTATTAATCTACAGTAAAGTGGACATTCGTTTTGACCTTGTTATTGATTTTCATTTT

Coding sequence (CDS)

ATGTCTTCCAATGCCATATTACACAACAAGCAAAGGGCGTCTTCTAATGCCAGATCATATAGCAAGTGTGAGGCATCCTATTCAAGACCACACAACATGAACAGGATATTCTATTCCAGATCACACAGCATGAATATAACATCTTACCCCATATCACACAACAAGGGTAAGACATCTTATCGCATATCATACACCAAGGATAAAGCATCACATCATCAAGGATACAAGGTTAAGAGATGA

Protein sequence

MSSNAILHNKQRASSNARSYSKCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDKASHHQGYKVKR
Homology
[Close]
BLAST of Cmc03g0063181 vs. NCBI nr
Match: KAA0063175.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 10  KQRASSNARSYS-KCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDK 69
           K   SSNARS+S K  A Y      NR F+SRSH  N TSYP S +KGKTSY  SY+KD+
Sbjct: 92  KHYTSSNARSHSNKNIAFYFISRIKNRAFFSRSHIKNKTSYPKSPSKGKTSYLTSYSKDE 151

Query: 70  ASHHQGYKV 78
           AS HQGYKV
Sbjct: 152 ASRHQGYKV 160

[Close]
BLAST of Cmc03g0063181 vs. ExPASy TrEMBL
Match: A0A5A7VB93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00630 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.9e-08
Identity = 42/69 (60.87%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 10  KQRASSNARSYS-KCEASYSRPHNMNRIFYSRSHSMNITSYPISHNKGKTSYRISYTKDK 69
           K   SSNARS+S K  A Y      NR F+SRSH  N TSYP S +KGKTSY  SY+KD+
Sbjct: 92  KHYTSSNARSHSNKNIAFYFISRIKNRAFFSRSHIKNKTSYPKSPSKGKTSYLTSYSKDE 151

Query: 70  ASHHQGYKV 78
           AS HQGYKV
Sbjct: 152 ASRHQGYKV 160

The following BLAST results are available for this feature:
BLAST of Cmc03g0063181 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063175.11.8e-0760.87gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc03g0063181 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0063181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VB938.9e-0860.87Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G0063... [more]
BLAST of Cmc03g0063181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0063181.1Cmc03g0063181.1mRNA