Cmc03g0062841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr03: 3187224 .. 3187832 (+)
RNA-Seq Expression	Cmc03g0062841
Synteny	Cmc03g0062841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACTGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGCATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATAATTGACCTTTAGGTACATCGCAGTTAATTCATCGTGTTTCTTTCAACCTGCAGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCTGCAGAAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTACCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGTCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGTGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTGTTTATAA

mRNA sequence

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACTGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGCATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCTGCAGAAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTACCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGTCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGTGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTGTTTATAA

Coding sequence (CDS)

ATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTCGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACTGCGTCATACAACGAGAATTTGTACGCTCCGGTGAGACAGTATCTCGACATTTCAACATCGCATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCCGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCTGCAGAAGATCGGCCTACTTTCAGAACGCGTAAGGGGGAAATTACCACAAACGTTCTTGGGGTCTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGTCGGTTGGGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGTGATTTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTGTTTATAA

Protein sequence

MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSRHFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVCDTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKGISCL

Homology

[Close]

BLAST of Cmc03g0062841 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 151/158 (95.57%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP  DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. NCBI nr
Match: KAA0062587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 151/158 (95.57%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADS+ILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. NCBI nr
Match: KAA0036923.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD IS+ENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. NCBI nr
Match: KAA0042501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRS ETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           +FNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 YFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL+GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. NCBI nr
Match: KAA0062150.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKV+VPA DRPTFRTRKGEI T+VLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFRTRKGEIATDVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 151/158 (95.57%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADS+ILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSQILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL
Match: A0A5A7U6C1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001970 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 151/158 (95.57%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVP  DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPTGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL
Match: A0A5A7T1V5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00150 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEEL+KRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 HFNIVLLAVLRLYEELMKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD IS+ENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL
Match: A0A5A7TLQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00550 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.8e-79
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRS ETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSDETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           +FNI LLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPA DRPTFRTRKGEI TNVLGVC
Sbjct: 100 YFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL+GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLIGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL
Match: A0A5A7V4C6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005200 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.8e-79
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN VIQREFVRSGETVSR
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNIALLAVLRLYEELIKRPVPNCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVC 120
           HFNI LLAVLRLYEELIKRPVPNCLGALDGTYIKV+VPA DRPTFRTRKGEI T+VLGVC
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPNCLGALDGTYIKVSVPAGDRPTFRTRKGEIATDVLGVC 159

Query: 121 DTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
           DTKGDFVYVL GWEGSAADSRILRD ISRENGLQVPKG
Sbjct: 160 DTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKG 197

[Close]

BLAST of Cmc03g0062841 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-25
Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSR 60
           MD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++   +Q  F  SGET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNIALLAVLRLYEELIKRPVPN-------------CLGALDGTYIKVNVPAEDRPTFRT 120
           HFN  L AV+ + ++   +P  N             C+G +D  +I V V  +++  FR 
Sbjct: 108 HFNNVLNAVIAISKDFF-QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRN 167

Query: 121 RKGEITTNVLGVCDTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVPKG 159
             G +T NVL        F YVL GWEGSA+D ++L   ++R N LQVP+G
Sbjct: 168 GNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQG 217

[Close]

BLAST of Cmc03g0062841 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 83  NCLGALDGTYIKVNVPAEDRPTFRTRKGEITTNVLGVCDTKGDFVYVLVGWEGSAADSRI 142
           +C+GA+D T+I   V  +  P+FR RKG+I+ N+L  C+   +F+YVL GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 143 LRDVISR-ENGLQVPK 158
           L D ++R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc03g0062841 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-13
Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 6   FAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSRHFNIA 65
           F  LC++L+    L  T  + +EE VAMFL +  H+     +   F R+ ETV R F   
Sbjct: 77  FTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREV 136

Query: 66  LLAVLRLYEELIKRP-------VPNCL--------------GALDGTYIKVNVPAEDRPT 125
           L A   L  + I+ P       +P  L              GA+DGT++ V V  + +  
Sbjct: 137 LTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGM 196

Query: 126 FRTRKGEITTNVLGVCDTKGDFVYVLVGWEGSAADSRILRDVISRENGLQVP 157
           +  R    + N++ +CD K  F Y+  G  GS  D+ +L+  I++++  + P
Sbjct: 197 YWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQ--IAQQSDSEFP 246

[Close]

BLAST of Cmc03g0062841 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 23/67 (34.33%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 81  VPNCLGALDGTYIKVNVPAEDRPTFRTRKGE--ITTNVLGVCDTKGDFVYVLVGWEGSAA 140
           +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+ GW GS  
Sbjct: 180 LPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLN 239

Query: 141 DSRILRD 146
           D  +L++
Sbjct: 240 DDVVLKN 246

The following BLAST results are available for this feature:

BLAST of Cmc03g0062841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051443.1	2.8e-79	95.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062587.1	2.8e-79	95.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036923.1	6.3e-79	94.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042501.1	1.4e-78	94.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062150.1	1.4e-78	94.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0062841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0062841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6J9	1.4e-79	95.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U6C1	1.4e-79	95.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T1V5	3.1e-79	94.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TLQ0	6.8e-79	94.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V4C6	6.8e-79	94.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc03g0062841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.9e-25	36.26	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	1.4e-15	47.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	8.4e-13	28.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G55350.1	1.1e-04	34.33	PIF / Ping-Pong family of plant transposases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 88..145 e-value: 3.4E-9 score: 36.6
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..154
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062841.1	Cmc03g0062841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding