Cmc03g0062801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr03: 3104993 .. 3105505 (+)
RNA-Seq Expression	Cmc03g0062801
Synteny	Cmc03g0062801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCCAGATGTGTGGATATAAGAAAATTCACTTTTGGCTTTTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGTTGCATCAACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTCAGAACTTGGAATTGTCGATCGTATTGCCAAGCCACTGAGAATTTATTGTGATAATTCTGCAGCAGTTTTCTTCTCAAAAAACGACAAGTATTCTAAAGGTGCTAAACATATGGAATTACAATACTTTTCCGTTAAAGAAGAAGTTCAGAAACAGAGGGTGTCAATTGAACACATTAGCACTAAACTTATGATTGTGGATCCACTAACTAAAGGATTTCCACCAAAGACGTCCAATGATCACGTTGAACGTATGGGCATCAGTAGATATCATCATTGA

mRNA sequence

ATGTTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCCAGATGTGTGGATATAAGAAAATTCACTTTTGGCTTTTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGTTGCATCAACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTCAGAACTTGGAATTGTCGATCGTATTGCCAAGCCACTGAGAATTTATTGTGATAATTCTGCAGCAGTTTTCTTCTCAAAAAACGACAAGTATTCTAAAGGTGCTAAACATATGGAATTACAATACTTTTCCGTTAAAGAAGAAGTTCAGAAACAGAGGGTGTCAATTGAACACATTAGCACTAAACTTATGATTGTGGATCCACTAACTAAAGGATTTCCACCAAAGACGTCCAATGATCACGTTGAACGTATGGGCATCAGTAGATATCATCATTGA

Coding sequence (CDS)

ATGTTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGATTCAGATTTTGCCAGATGTGTGGATATAAGAAAATTCACTTTTGGCTTTTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGTTGCATCAACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTCAGAACTTGGAATTGTCGATCGTATTGCCAAGCCACTGAGAATTTATTGTGATAATTCTGCAGCAGTTTTCTTCTCAAAAAACGACAAGTATTCTAAAGGTGCTAAACATATGGAATTACAATACTTTTCCGTTAAAGAAGAAGTTCAGAAACAGAGGGTGTCAATTGAACACATTAGCACTAAACTTATGATTGTGGATCCACTAACTAAAGGATTTCCACCAAAGACGTCCAATGATCACGTTGAACGTATGGGCATCAGTAGATATCATCATTGA

Protein sequence

MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH

Homology

[Close]

BLAST of Cmc03g0062801 vs. NCBI nr
Match: KAA0041540.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24412.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 334.3 bits (856), Expect = 6.0e-88
Identity = 163/170 (95.88%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE
Sbjct: 31  MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 90

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIVDRIAKPLRIYCDN AAVFFSKNDKYSKGAKHMELQY
Sbjct: 91  FVACFEATVHGLWLRNFISGLGIVDRIAKPLRIYCDNFAAVFFSKNDKYSKGAKHMELQY 150

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VK+EVQKQRVSIEHI+TKLMI DPLTKGFPPKTSNDHV+RMGISRYHH
Sbjct: 151 FAVKKEVQKQRVSIEHINTKLMIADPLTKGFPPKTSNDHVQRMGISRYHH 200

[Close]

BLAST of Cmc03g0062801 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 156/170 (91.76%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M TYKRSDHLEVIGYSDSDFA CVD RK TFG+LFLLAEGAISWKSAKQSII AS MEAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAE 119

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIVD IAKPLRIYCDNSAAVFFSKNDKYSKGAKHMEL+Y
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKY 179

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F VKEEVQKQRVSIEHISTKLMI DPLTKG PPKT NDHVERMGISRYHH
Sbjct: 180 FVVKEEVQKQRVSIEHISTKLMIADPLTKGLPPKTFNDHVERMGISRYHH 229

[Close]

BLAST of Cmc03g0062801 vs. NCBI nr
Match: KAA0039623.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK01681.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 6.0e-80
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M TYKRSDHLEVIGY DSDFA CVDIRK TFG+LFLLAEGAISWKSAKQSII  STMEAE
Sbjct: 537 MLTYKRSDHLEVIGYLDSDFAGCVDIRKSTFGYLFLLAEGAISWKSAKQSIITTSTMEAE 596

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIV+ IAKPLRIYCDNSAAVFFSKNDKYSKG KHMEL+Y
Sbjct: 597 FVACFEATVHGLWLRNFISGLGIVNSIAKPLRIYCDNSAAVFFSKNDKYSKGVKHMELKY 656

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VKEEVQKQRVSIE+ISTKLM+ DPLTKG PPKT NDHVER GI+RYHH
Sbjct: 657 FAVKEEVQKQRVSIEYISTKLMVADPLTKGLPPKTFNDHVERKGINRYHH 706

[Close]

BLAST of Cmc03g0062801 vs. NCBI nr
Match: KAA0060866.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 146/170 (85.88%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           + TYKRS HLE+IGYSDSDF  CVD RK TFG+LFLLAEGAISWKSAKQSII ASTMEAE
Sbjct: 317 LLTYKRSGHLEMIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAE 376

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWL NFIS LGIVD IAK  RIYCDN AAVFFSKNDKYS GAKHMEL+Y
Sbjct: 377 FVACFEATVHGLWLWNFISGLGIVDSIAKSQRIYCDNFAAVFFSKNDKYSVGAKHMELKY 436

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VKEEVQKQRVSIEHISTKLMI DPLTKG PPKT NDHV+RMGI+RYHH
Sbjct: 437 FAVKEEVQKQRVSIEHISTKLMIADPLTKGLPPKTFNDHVQRMGINRYHH 486

[Close]

BLAST of Cmc03g0062801 vs. NCBI nr
Match: PKU59787.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 135/166 (81.33%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M T++RSDHLEVIGYSDSDFA C+D RK TFG++FLL+ GAISWKSAKQS+I ASTMEAE
Sbjct: 47  MLTFRRSDHLEVIGYSDSDFAGCLDSRKSTFGYVFLLSGGAISWKSAKQSVIAASTMEAE 106

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEAT+ GLWLRNFIS LG+VD IAKPL+IYCDNSAAVFFSKNDKYSKGAKHMEL+Y
Sbjct: 107 FVACFEATIQGLWLRNFISGLGVVDSIAKPLKIYCDNSAAVFFSKNDKYSKGAKHMELKY 166

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGIS 167
           F+VKEEVQKQRVS EHIST  MI DPLTKG PPKT ++HV RMGI+
Sbjct: 167 FAVKEEVQKQRVSFEHISTNFMIADPLTKGLPPKTFHEHVVRMGIT 212

[Close]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.0e-21
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 14   GYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLW 73
            GY+D+D A  +D RK + G+LF  + GAISW+S  Q  +  ST EAE++A  E     +W
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236

Query: 74   LRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSVKEEVQKQRVS 133
            L+ F+ ELG+     K   +YCD+ +A+  SKN  Y    KH++++Y  ++E V  + + 
Sbjct: 1237 LKRFLQELGLHQ---KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLK 1296

Query: 134  IEHISTKLMIVDPLTKGFP 153
            +  IST     D LTK  P
Sbjct: 1297 VLKISTNENPADMLTKVVP 1312

[Close]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 99.4 bits (246), Expect = 4.2e-20
Identity = 51/156 (32.69%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 11   EVIGYSDSDFARCVDIRKFTFGFLFLLAE-GAISWKSAKQSIIVASTMEAEFVACFEATV 70
            ++IGY DSD+A     RK T G+LF + +   I W + +Q+ + AS+ EAE++A FEA  
Sbjct: 1247 KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVR 1306

Query: 71   HGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSVKEEVQK 130
              LWL+  ++ + I  ++  P++IY DN   +  + N    K AKH++++Y   +E+VQ 
Sbjct: 1307 EALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQN 1366

Query: 131  QRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGI 166
              + +E+I T+  + D  TK  P     +  +++G+
Sbjct: 1367 NVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 50/163 (30.67%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 5    KRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVAC 64
            K+ + L +  YSD+D+A   D    T G++  L    ISW S KQ  +V S+ EAE+ + 
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1361

Query: 65   FEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSVK 124
               +    W+ + ++ELGI  R+ +P  IYCDN  A +   N  +    KH+ + Y  ++
Sbjct: 1362 ANTSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIR 1421

Query: 125  EEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISR 168
             +VQ   + + H+ST   + D LTK        +   ++G++R
Sbjct: 1422 NQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

[Close]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-17
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 5    KRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVAC 64
            K+ + L +  YSD+D+A   D    T G++  L    ISW S KQ  +V S+ EAE+ + 
Sbjct: 1285 KKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1344

Query: 65   FEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSVK 124
               +    W+ + ++ELGI  +++ P  IYCDN  A +   N  +    KH+ L Y  ++
Sbjct: 1345 ANTSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIR 1404

Query: 125  EEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGI 166
             +VQ   + + H+ST   + D LTK        +   ++G+
Sbjct: 1405 NQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 4   YKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVA 63
           + R+   +++GYSD+D+A  V+ R+ T G+LF L  G +SW+S KQ  +  S+ E E++A
Sbjct: 63  FTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMA 122

Query: 64  CFEATVHGLWL 75
             EAT   +WL
Sbjct: 123 LSEATQEAVWL 133

[Close]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL
Match: A0A5D3DLL7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002020 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.9e-88
Identity = 163/170 (95.88%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE
Sbjct: 31  MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 90

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIVDRIAKPLRIYCDN AAVFFSKNDKYSKGAKHMELQY
Sbjct: 91  FVACFEATVHGLWLRNFISGLGIVDRIAKPLRIYCDNFAAVFFSKNDKYSKGAKHMELQY 150

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VK+EVQKQRVSIEHI+TKLMI DPLTKGFPPKTSNDHV+RMGISRYHH
Sbjct: 151 FAVKKEVQKQRVSIEHINTKLMIADPLTKGFPPKTSNDHVQRMGISRYHH 200

[Close]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 156/170 (91.76%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M TYKRSDHLEVIGYSDSDFA CVD RK TFG+LFLLAEGAISWKSAKQSII AS MEAE
Sbjct: 60  MLTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAE 119

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIVD IAKPLRIYCDNSAAVFFSKNDKYSKGAKHMEL+Y
Sbjct: 120 FVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKY 179

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F VKEEVQKQRVSIEHISTKLMI DPLTKG PPKT NDHVERMGISRYHH
Sbjct: 180 FVVKEEVQKQRVSIEHISTKLMIADPLTKGLPPKTFNDHVERMGISRYHH 229

[Close]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL
Match: A0A5D3BPH8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00030 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M TYKRSDHLEVIGY DSDFA CVDIRK TFG+LFLLAEGAISWKSAKQSII  STMEAE
Sbjct: 537 MLTYKRSDHLEVIGYLDSDFAGCVDIRKSTFGYLFLLAEGAISWKSAKQSIITTSTMEAE 596

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWLRNFIS LGIV+ IAKPLRIYCDNSAAVFFSKNDKYSKG KHMEL+Y
Sbjct: 597 FVACFEATVHGLWLRNFISGLGIVNSIAKPLRIYCDNSAAVFFSKNDKYSKGVKHMELKY 656

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VKEEVQKQRVSIE+ISTKLM+ DPLTKG PPKT NDHVER GI+RYHH
Sbjct: 657 FAVKEEVQKQRVSIEYISTKLMVADPLTKGLPPKTFNDHVERKGINRYHH 706

[Close]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL
Match: A0A5A7V2Y1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7015G00040 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.1e-77
Identity = 146/170 (85.88%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           + TYKRS HLE+IGYSDSDF  CVD RK TFG+LFLLAEGAISWKSAKQSII ASTMEAE
Sbjct: 317 LLTYKRSGHLEMIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAE 376

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEATVHGLWL NFIS LGIVD IAK  RIYCDN AAVFFSKNDKYS GAKHMEL+Y
Sbjct: 377 FVACFEATVHGLWLWNFISGLGIVDSIAKSQRIYCDNFAAVFFSKNDKYSVGAKHMELKY 436

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGISRYHH 171
           F+VKEEVQKQRVSIEHISTKLMI DPLTKG PPKT NDHV+RMGI+RYHH
Sbjct: 437 FAVKEEVQKQRVSIEHISTKLMIADPLTKGLPPKTFNDHVQRMGINRYHH 486

[Close]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL
Match: A0A2I0V8Q4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca026447 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 135/166 (81.33%), Postives = 150/166 (90.36%), Query Frame = 0


Query: 1   MFTYKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAE 60
           M T++RSDHLEVIGYSDSDFA C+D RK TFG++FLL+ GAISWKSAKQS+I ASTMEAE
Sbjct: 47  MLTFRRSDHLEVIGYSDSDFAGCLDSRKSTFGYVFLLSGGAISWKSAKQSVIAASTMEAE 106

Query: 61  FVACFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQY 120
           FVACFEAT+ GLWLRNFIS LG+VD IAKPL+IYCDNSAAVFFSKNDKYSKGAKHMEL+Y
Sbjct: 107 FVACFEATIQGLWLRNFISGLGVVDSIAKPLKIYCDNSAAVFFSKNDKYSKGAKHMELKY 166

Query: 121 FSVKEEVQKQRVSIEHISTKLMIVDPLTKGFPPKTSNDHVERMGIS 167
           F+VKEEVQKQRVS EHIST  MI DPLTKG PPKT ++HV RMGI+
Sbjct: 167 FAVKEEVQKQRVSFEHISTNFMIADPLTKGLPPKTFHEHVVRMGIT 212

[Close]

BLAST of Cmc03g0062801 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 4   YKRSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVA 63
           Y     +++  +SD+ F  C D R+ T G+   L    ISWKS KQ ++  S+ EAE+ A
Sbjct: 434 YSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493

Query: 64  CFEATVHGLWLRNFISELGIVDRIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELQYFSV 123
              AT   +WL  F  EL +   ++KP  ++CDN+AA+  + N  + +  KH+E    SV
Sbjct: 494 LSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 553

Query: 124 KE 126
           +E
Sbjct: 554 RE 553

[Close]

BLAST of Cmc03g0062801 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 9.7e-04
Identity = 20/58 (34.48%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 6   RSDHLEVIGYSDSDFARCVDIRKFTFGFLFLLAEGAISWKSAKQSIIVASTMEAEFVA 64
           ++  L V  + DSD+A C   R+ T GF   L    ISW + +Q  +  S+ E E+ A
Sbjct: 158 KNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215

The following BLAST results are available for this feature:

BLAST of Cmc03g0062801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041540.1	6.0e-88	95.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051161.1	2.2e-82	91.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0039623.1	6.0e-80	88.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060866.1	1.1e-76	85.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
PKU59787.1	2.7e-72	81.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]

BLAST of Cmc03g0062801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-21	38.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.2e-20	32.69	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.8e-18	30.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.4e-17	30.43	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	2.6e-09	40.85	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc03g0062801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL7	2.9e-88	95.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UCB2	1.1e-82	91.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BPH8	2.9e-80	88.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V2Y1	5.1e-77	85.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A2I0V8Q4	1.3e-72	81.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]

BLAST of Cmc03g0062801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-16	35.25	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.7e-04	34.48	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 13..154 e-value: 7.20245E-59 score: 178.046

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062801.1	Cmc03g0062801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003935	GTP cyclohydrolase II activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding