Cmc03g0062781 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062781
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr03: 3092363 .. 3093052 (-)
RNA-Seq Expression	Cmc03g0062781
Synteny	Cmc03g0062781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCCTGAAGGATTTAAGATACCTGAATTATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATCATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAATAAATATTTATTGAAAGAAGGTTATCAAAATAATCCATTTTGTCCATGTATTTTTATTAAAAAATCACAGTTAGGATTTGCAATTATAGCTGTATATGTTGATGATTTAAATATAATTAGAACTCCTAAAGAGCTATCAAAGACGATAGAATATCTCAAAGAGAAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGATTTGCAAATCGAGTATTTAGCCGATGAAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAATATTCTACATGGACAAAGCACACCTATTGAACATTTCAATAGTGGTCCGATTACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGCACCATACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTATTAACAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAAGCATGTACTTCGTTATCTTTGATGGACAATTGA

mRNA sequence

ATGAAAATCCCTGAAGGATTTAAGATACCTGAATTATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATCATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAATAAATATTTATTGAAAGAAGGTTATCAAAATAATCCATTTTGTCCATGTATTTTTATTAAAAAATCACAGTTAGGATTTGCAATTATAGCTGTATATGTTGATGATTTAAATATAATTAGAACTCCTAAAGAGCTATCAAAGACGATAGAATATCTCAAAGAGAAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGATTTGCAAATCGAGTATTTAGCCGATGAAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAATATTCTACATGGACAAAGCACACCTATTGAACATTTCAATAGTGGTCCGATTACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGCACCATACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTATTAACAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAAGCATGTACTTCGTTATCTTTGATGGACAATTGA

Coding sequence (CDS)

ATGAAAATCCCTGAAGGATTTAAGATACCTGAATTATATAATTCAAACTCTAGAGAATTATGTTCAATCAAATTACAAAGATCATCATATGGATTGAAACAATCAGGACGAATGTGGTACAATCACTTAAATAAATATTTATTGAAAGAAGGTTATCAAAATAATCCATTTTGTCCATGTATTTTTATTAAAAAATCACAGTTAGGATTTGCAATTATAGCTGTATATGTTGATGATTTAAATATAATTAGAACTCCTAAAGAGCTATCAAAGACGATAGAATATCTCAAAGAGAAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGATTTGCAAATCGAGTATTTAGCCGATGAAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAATATTCTACATGGACAAAGCACACCTATTGAACATTTCAATAGTGGTCCGATTACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGCACCATACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTATTAACAAGATATAGTTCTTCTCCAACAAAAAGACATTGGAATGAAGTTAAAGCATGTACTTCGTTATCTTTGATGGACAATTGA

Protein sequence

MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPCIFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLADEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLSAIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVKACTSLSLMDN

Homology

[Close]

BLAST of Cmc03g0062781 vs. NCBI nr
Match: RVW94544.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 335.9 bits (860), Expect = 2.8e-88
Identity = 162/219 (73.97%), Postives = 187/219 (85.39%), Query Frame = 0


Query: 1    MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
            MKIPEGFK+P+  N+  R + SIKLQRS YGLKQSGRMWYN L++YLLKEGY NNP CPC
Sbjct: 924  MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 983

Query: 61   IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
            IFIKKS+ GFAIIAVYVDDLN++ TP+EL++T  YLK++FEMKDLGKTKFCL LQIE+  
Sbjct: 984  IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 1043

Query: 121  DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
            + + +HQ TY +K+LK FYMDKAH L+ S+VVR LDVKKD FRP E +EELLGPE PYLS
Sbjct: 1044 NGVLVHQSTYIKKVLKRFYMDKAHPLSSSMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 1103

Query: 181  AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
            AIGALMYLAN TRPDIAFSVNLL RYSSSPT+RHWN +K
Sbjct: 1104 AIGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNGIK 1142

[Close]

BLAST of Cmc03g0062781 vs. NCBI nr
Match: RVW93168.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-87
Identity = 161/219 (73.52%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEGFK+P+  N+  R + SIKLQRS YGLKQSGRMWYN L++YLLKEGY NNP CPC
Sbjct: 459 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 518

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           IFIKKS+ GFAIIAVYVDDLN++ TP+EL++T  YLK++FEMKDLGKTKFCL LQIE+  
Sbjct: 519 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 578

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           + + +HQ TY +K+LK FYMDKAH L+  +VVR LDVKKD FRP E +EELLGPE PYLS
Sbjct: 579 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 638

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSSSPT+RHWN +K
Sbjct: 639 AIGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNGIK 677

[Close]

BLAST of Cmc03g0062781 vs. NCBI nr
Match: RVW13569.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 333.2 bits (853), Expect = 1.8e-87
Identity = 160/219 (73.06%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEGFK+P+  N+  R + SIKLQRS YGLKQSGRMWYN L++YLLKEGY NNP CPC
Sbjct: 721 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 780

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           IFIKKS+ GFAIIAVYVDDLN++ TP+EL++T  YLK++FEMKDLGKTKFCL LQIE+  
Sbjct: 781 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLSLQIEHFP 840

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           + + +HQ TY +K+LK FYMDKAH L+  +VVR LDVKKD FRP E +EELLGPE PYLS
Sbjct: 841 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 900

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT+RHWN +K
Sbjct: 901 AIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIK 939

[Close]

BLAST of Cmc03g0062781 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 332.8 bits (852), Expect = 2.3e-87
Identity = 160/219 (73.06%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEGFK+P+  N+  R + SIKLQRS YGLKQSGRMWYN L++YLLKEGY NNP CPC
Sbjct: 665 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 724

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           IFIKKS+ GFAIIAVYVDDLN++ TP+EL++T  YLK++FEMKDLGKTKFCL LQIE+  
Sbjct: 725 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 784

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           + + +HQ TY +K+LK FYMDKAH L+  +VVR LDVKKD FRP E +EELLGPE PYLS
Sbjct: 785 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 844

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT+RHWN +K
Sbjct: 845 AIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIK 883

[Close]

BLAST of Cmc03g0062781 vs. NCBI nr
Match: CAN77974.1 (hypothetical protein VITISV_006175 [Vitis vinifera])

HSP 1 Score: 332.8 bits (852), Expect = 2.3e-87
Identity = 160/219 (73.06%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1    MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
            MKIPEGFK+P+  N+  R + SIKLQRS YGLKQSGRMWYN L++YLLKEGY NNP CPC
Sbjct: 1084 MKIPEGFKLPDANNTKPRSMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGYVNNPICPC 1143

Query: 61   IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
            IFIKKS+ GFAIIAVYVDDLN++ TP+EL++T  YLK++FEMKDLGKTKFCL LQIE+  
Sbjct: 1144 IFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFP 1203

Query: 121  DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
            + + +HQ TY +K+LK FYMDKAH L+  +VVR LDVKKD FRP E +EELLGPE PYLS
Sbjct: 1204 NGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDPFRPCEXDEELLGPEVPYLS 1263

Query: 181  AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
            AIGALMYLAN TRPDIAFSVNLL RYSS+PT+RHWN +K
Sbjct: 1264 AIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIK 1302

[Close]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24
Identity = 76/223 (34.08%), Postives = 121/223 (54.26%), Query Frame = 0


Query: 1    MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
            M+ PEGF++          +C  KL +S YGLKQ+ R WY   + ++  + Y      PC
Sbjct: 938  MEQPEGFEVA----GKKHMVC--KLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 997

Query: 61   IFIKK-SQLGFAIIAVYVDDLNIIRTPKEL-SKTIEYLKEKFEMKDLGKTKFCLDLQI-- 120
            ++ K+ S+  F I+ +YVDD+ I+   K L +K    L + F+MKDLG  +  L ++I  
Sbjct: 998  VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1057

Query: 121  EYLADEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEA 180
            E  + ++++ Q  Y E++L+ F M  A  ++  +   L   KK    P    E+    + 
Sbjct: 1058 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK--MCPTTVEEKGNMAKV 1117

Query: 181  PYLSAIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
            PY SA+G+LMY    TRPDIA +V +++R+  +P K HW  VK
Sbjct: 1118 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1152

[Close]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 0


Query: 8    KIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPCIFI-KKS 67
            ++P+  + NS  +C  KL ++ YGLKQ+ R W+    + L +  + N+    CI+I  K 
Sbjct: 1019 RLPQGISCNSDNVC--KLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKG 1078

Query: 68   QLGFAI-IAVYVDDLNIIR-TPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLADEIF 127
             +   I + +YVDD+ I       ++    YL EKF M DL + K  + ++IE   D+I+
Sbjct: 1079 NINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIY 1138

Query: 128  IHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPE----APYLS 187
            + Q  Y +KIL  F M+  + ++  +             P + N ELL  +     P  S
Sbjct: 1139 LSQSAYVKKILSKFNMENCNAVSTPL-------------PSKINYELLNSDEDCNTPCRS 1198

Query: 188  AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
             IG LMY+   TRPD+  +VN+L+RYSS      W  +K
Sbjct: 1199 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLK 1222

[Close]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-15
Identity = 57/197 (28.93%), Postives = 98/197 (49.75%), Query Frame = 0


Query: 24   KLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPCIFIKKSQLGFAIIAVYVDDLNII 83
            +L+++ YGLKQ+ R WY  L  YLL  G+ N+     +F+ +       + VYVDD+ I 
Sbjct: 1081 RLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILIT 1140

Query: 84   RTPKELSK-TIEYLKEKFEMKDLGKTKFCLDLQIEYLADEIFIHQLTYTEKILKIFYMDK 143
                 L K T++ L ++F +K+     + L ++ + +   + + Q  YT  +L      +
Sbjct: 1141 GNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLA-----R 1200

Query: 144  AHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLSAIGALMYLANNTRPDIAFSVNL 203
             ++L    V   +     +        +L  P   Y   +G+L YLA  TRPD++++VN 
Sbjct: 1201 TNMLTAKPVATPMATSPKL--TLHSGTKLPDP-TEYRGIVGSLQYLA-FTRPDLSYAVNR 1260

Query: 204  LTRYSSSPTKRHWNEVK 220
            L++Y   PT  HWN +K
Sbjct: 1261 LSQYMHMPTDDHWNALK 1268

[Close]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-14
Identity = 58/204 (28.43%), Postives = 96/204 (47.06%), Query Frame = 0


Query: 24   KLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPCIFIKKSQLGFAIIAVYVDDLNII 83
            KL+++ YGLKQ+ R WY  L  YLL  G+ N+     +F+ +       + VYVDD+ I 
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 84   -RTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLADEIFIHQLTYTEKILKIFYMDK 143
               P  L  T++ L ++F +KD  +  + L ++ + +   + + Q  Y   +L    M  
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 144  AHLLNISIVVRLLDVKKDIFRPREDNEEL-------LGPEAPYLSAIGALMYLANNTRPD 203
            A               K +  P   + +L       L     Y   +G+L YLA  TRPD
Sbjct: 1218 A---------------KPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLA-FTRPD 1277

Query: 204  IAFSVNLLTRYSSSPTKRHWNEVK 220
            I+++VN L+++   PT+ H   +K
Sbjct: 1278 ISYAVNRLSQFMHMPTEEHLQALK 1285

[Close]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-13
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 0


Query: 24  KLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPCIFIKKSQLGFAIIAVYVDDLNII 83
           +L    YGLKQ+  +W  H+N  L K G+  +     ++ + +  G   IAVYVDDL + 
Sbjct: 35  ELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVA 94

Query: 84  R-TPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLAD-EIFIHQLTYTEKILKIFYMD 143
             +PK   +  + L + + MKDLGK    L L I   ++ +I +    Y  K        
Sbjct: 95  APSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKA-----AS 154

Query: 144 KAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLSAIGALMYLANNTRPDIAFSVN 203
           ++ +    +    L   K +F   E     L    PY S +G L++ AN  RPDI++ V+
Sbjct: 155 ESEINTFKLTQTPLCNSKPLF---ETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVS 214

Query: 204 LLTRYSSSPTKRH 215
           LL+R+   P   H
Sbjct: 215 LLSRFLREPRAIH 219

[Close]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL
Match: A0A2N9I5S5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47934 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.4e-91
Identity = 166/219 (75.80%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEG+K+PE YNS SR + SIKLQRS YGLKQSGRMWYN L++YLLKEG++NNP CPC
Sbjct: 355 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 414

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           +FIKKS+ GFAI+AVYVDDLN++ TP+EL+KT +YLK +FEMKDLGKTKFCL LQIE+L 
Sbjct: 415 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 474

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           D I IHQ TYTEK+LK F+MDKAH L+  +VVR LDVKKD FRP+E  EE LGPE PYLS
Sbjct: 475 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 534

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT RHWN VK
Sbjct: 535 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVK 573

[Close]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL
Match: A0A2N9G9W6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24244 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.4e-91
Identity = 166/219 (75.80%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEG+K+PE YNS SR + SIKLQRS YGLKQSGRMWYN L++YLLKEG++NNP CPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           +FIKKS+ GFAI+AVYVDDLN++ TP+EL+KT +YLK +FEMKDLGKTKFCL LQIE+L 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           D I IHQ TYTEK+LK F+MDKAH L+  +VVR LDVKKD FRP+E  EE LGPE PYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT RHWN VK
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVK 599

[Close]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.4e-91
Identity = 166/219 (75.80%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEG+K+PE YNS SR + SIKLQRS YGLKQSGRMWYN L++YLLKEG++NNP CPC
Sbjct: 355 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 414

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           +FIKKS+ GFAI+AVYVDDLN++ TP+EL+KT +YLK +FEMKDLGKTKFCL LQIE+L 
Sbjct: 415 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 474

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           D I IHQ TYTEK+LK F+MDKAH L+  +VVR LDVKKD FRP+E  EE LGPE PYLS
Sbjct: 475 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 534

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT RHWN VK
Sbjct: 535 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVK 573

[Close]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL
Match: A0A2N9GX57 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31841 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.4e-91
Identity = 166/219 (75.80%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEG+K+PE YNS SR + SIKLQRS YGLKQSGRMWYN L++YLLKEG++NNP CPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           +FIKKS+ GFAI+AVYVDDLN++ TP+EL+KT +YLK +FEMKDLGKTKFCL LQIE+L 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           D I IHQ TYTEK+LK F+MDKAH L+  +VVR LDVKKD FRP+E  EE LGPE PYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT RHWN VK
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVK 599

[Close]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL
Match: A0A2N9HZE8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45337 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.4e-91
Identity = 166/219 (75.80%), Postives = 189/219 (86.30%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MKIPEG+K+PE YNS SR + SIKLQRS YGLKQSGRMWYN L++YLLKEG++NNP CPC
Sbjct: 381 MKIPEGYKMPEAYNSKSRNMYSIKLQRSLYGLKQSGRMWYNRLSEYLLKEGFENNPICPC 440

Query: 61  IFIKKSQLGFAIIAVYVDDLNIIRTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLA 120
           +FIKKS+ GFAI+AVYVDDLN++ TP+EL+KT +YLK +FEMKDLGKTKFCL LQIE+L 
Sbjct: 441 VFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLKNEFEMKDLGKTKFCLGLQIEHLP 500

Query: 121 DEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLS 180
           D I IHQ TYTEK+LK F+MDKAH L+  +VVR LDVKKD FRP+E  EE LGPE PYLS
Sbjct: 501 DGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDPFRPQEVGEETLGPEVPYLS 560

Query: 181 AIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           AIGALMYLAN TRPDIAFSVNLL RYSS+PT RHWN VK
Sbjct: 561 AIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVK 599

[Close]

BLAST of Cmc03g0062781 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-13
Identity = 64/219 (29.22%), Postives = 102/219 (46.58%), Query Frame = 0


Query: 1   MKIPEGFKIPELYNSNSRELCSIKLQRSSYGLKQSGRMWYNHLNKYLLKEGYQNNPFCPC 60
           MK+P G+   +  +     +C +K  +S YGLKQ+ R W+   +  L+  G+  +     
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLK--KSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHT 269

Query: 61  IFIKKSQLGFAIIAVYVDDLNII-RTPKELSKTIEYLKEKFEMKDLGKTKFCLDLQIEYL 120
            F+K +   F  + VYVDD+ I       + +    LK  F+++DLG  K+ L L+I   
Sbjct: 270 YFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 329

Query: 121 ADEIFIHQLTYTEKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYL 180
           A  I I Q  Y   +L     D+  LL        + +   +        + +  +A Y 
Sbjct: 330 AAGINICQRKYALDLL-----DETGLLGCK--PSSVPMDPSVTFSAHSGGDFVDAKA-YR 389

Query: 181 SAIGALMYLANNTRPDIAFSVNLLTRYSSSPTKRHWNEV 219
             IG LMYL   TR DI+F+VN L+++S +P   H   V
Sbjct: 390 RLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAV 417

[Close]

BLAST of Cmc03g0062781 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 41/148 (27.70%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 73  IAVYVDDLNIIRTPKE-LSKTIEYLKEKFEMKDLGKTKFCLDLQIEYLADEIFIHQLTYT 132
           + +YVDD+ +  +    L+  I  L   F MKDLG   + L +QI+     +F+ Q  Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 133 EKILKIFYMDKAHLLNISIVVRLLDVKKDIFRPREDNEELLGPEAPYLSAIGALMYLANN 192
           E+IL    M     ++  + ++L         P           + + S +GAL YL   
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP---------DPSDFRSIVGALQYL-TL 122

Query: 193 TRPDIAFSVNLLTRYSSSPTKRHWNEVK 220
           TRPDI+++VN++ +    PT   ++ +K
Sbjct: 123 TRPDISYAVNIVCQRMHEPTLADFDLLK 140

The following BLAST results are available for this feature:

BLAST of Cmc03g0062781 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW94544.1	2.8e-88	73.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW93168.1	1.1e-87	73.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW13569.1	1.8e-87	73.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	2.3e-87	73.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN77974.1	2.3e-87	73.06	hypothetical protein VITISV_006175 [Vitis vinifera]	[more]

BLAST of Cmc03g0062781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-24	34.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-20	31.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.5e-15	28.93	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.1e-14	28.43	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P25600	6.8e-13	30.05	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc03g0062781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I5S5	8.4e-91	75.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G9W6	8.4e-91	75.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G6F8	8.4e-91	75.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9GX57	8.4e-91	75.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HZE8	8.4e-91	75.80	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc03g0062781 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-13	29.22	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-06	27.70	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 13..145 e-value: 2.0E-21 score: 76.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 9..216
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 22..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062781.1	Cmc03g0062781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding