Cmc03g0062771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr03: 3074487 .. 3075504 (-)
RNA-Seq Expression	Cmc03g0062771
Synteny	Cmc03g0062771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTTCCAACACGGTGTCAATCTATAATTTATAATGGATGAACATAAGTTTTGCATCTCTTATAATTGCGTTCATAACATCCCAACGTTAGTTGCTACTAATGTTGGAGTTTTTAATTAATGACACGAAGAGGATACCGCATATCCTGCATGACACTAGCCATAGGATCAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAAACCTTGTGTGTCAGCAAAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTATGCCACCTATTGAGGACCATTACTGAACTAACGTAGACAGAAGTTGTCAATGTTGAAGAGATGGTCGCAATGTTCCTCCACATACTCGCGCACGATGTGAAAAACTGTGTCATTCACCAAGAGTTCATACGATCGGGTGAGACAATTTCCCATTATTTCAACATGGTGTTACTGGCAGTAATTCGACTGTATGACGAGCTCTTGAAAAAACTACAACTAGTGCCGAATGGTTGCACATATCAACTATGTACTTCCAACCATCCGATGTAAGACCTTGTCATTAATCATTAGTTATGCGTTGCAGAATTTCCTTGGTGCATTAGATGGGATGTATATCAAAGTCGACATTCCAACAAGTGAGCAGGCTAAGTATAGAACACACAAGGGAGAGGTGGCCACAAATGTCCTTGGTGTGTGTGACATGAAAGGAGATTTCATTTATGTACTTGTCGGTTGGGAAAGATCAATTGCGAACTCATGCATCCTTCGAGATACCATTTCAAGGCTTAATGGCCTGAAAGTGCCCAAGGATAACTACCTATGGCACTGTATGTAGAAATACAATTTATCAATTAACAGCTGCGACATTTTAATCGCTCAATGTGATCACAAGAGATGTCCACGGGGCGGCATAAGGCCGGGGATGCCACTCCCTGTCCCCGTCCCTACCTCCTATTCCATTCCCCATCCCCATCAATTTCCACGTGGGGAACGGGGCGGGGATTCTCCATGGGGATTCCACGGGGATTGGGTTCCT

mRNA sequence

TTCTTTTCCAACACGGTGTCAATCTATAATTTATAATGGATGAACATAAGTTTTGCATCTCTTATAATTGCGTTCATAACATCCCAACGTTAGTTGCTACTAATGTTGGAGTTTTTAATTAATGACACGAAGAGGATACCGCATATCCTGCATGACACTAGCCATAGGATCAGACAGTTAGCCTATTTTCGCATGATTCATGCCTCAAACCTTGTGTGTCAGCAAAGTACGAGAATGGATCGAAGATGTTTCGCCATTCTATGCCACCTATTGAGGACCATTACTGAACTAACGTAGACAGAAGTTGTCAATGTTGAAGAGATGGTCGCAATGTTCCTCCACATACTCGCGCACGATGTGAAAAACTGTGTCATTCACCAAGAGTTCATACGATCGGAATTTCCTTGGTGCATTAGATGGGATGTATATCAAAGTCGACATTCCAACAAGTGAGCAGGCTAAGTATAGAACACACAAGGGAGAGGTGGCCACAAATGTCCTTGGTGTGTGTGACATGAAAGGAGATTTCATTTATGTACTTGTCGGTTGGGAAAGATCAATTGCGAACTCATGCATCCTTCGAGATACCATTTCAAGGCTTAATGGCCTGAAAGTGCCCAAGGATAACTACCTATGGCACTGTATGTAGAAATACAATTTATCAATTAACAGCTGCGACATTTTAATCGCTCAATGTGATCACAAGAGATGTCCACGGGGCGGCATAAGGCCGGGGATGCCACTCCCTGTCCCCGTCCCTACCTCCTATTCCATTCCCCATCCCCATCAATTTCCACGTGGGGAACGGGGCGGGGATTCTCCATGGGGATTCCACGGGGATTGGGTTCCT

Coding sequence (CDS)

ATGTATATCAAAGTCGACATTCCAACAAGTGAGCAGGCTAAGTATAGAACACACAAGGGAGAGGTGGCCACAAATGTCCTTGGTGTGTGTGACATGAAAGGAGATTTCATTTATGTACTTGTCGGTTGGGAAAGATCAATTGCGAACTCATGCATCCTTCGAGATACCATTTCAAGGCTTAATGGCCTGAAAGTGCCCAAGGATAACTACCTATGGCACTGTATGTAG

Protein sequence

MYIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLNGLKVPKDNYLWHCM

Homology

[Close]

BLAST of Cmc03g0062771 vs. NCBI nr
Match: KAA0064261.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK18630.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GWE S+A+SCIL D ISR N
Sbjct: 106 YIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSCILHDAISRPN 165

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 166 GLKVPKGYY 174

[Close]

BLAST of Cmc03g0062771 vs. NCBI nr
Match: KAA0025494.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GW+ S A+SCILRD +SR N
Sbjct: 61  YIKVNVPASDRARYRTCKGEVATNVLGVCDTKGDFVYVLAGWKGSAADSCILRDALSRPN 120

Query: 62  GLKVPKDNY 71
           GLKVPKD Y
Sbjct: 121 GLKVPKDYY 129

[Close]

BLAST of Cmc03g0062771 vs. NCBI nr
Match: KAA0055437.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08919.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 5.6e-22
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++  S+QA+YRTHKGE+ATNVLGVCD KGDF+YVLVGW+ SIA+S ILRD ISR N
Sbjct: 67  YIKVNVSASDQARYRTHKGEMATNVLGVCDTKGDFVYVLVGWKGSIADSRILRDAISRPN 126

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 127 GLKVPKGYY 135

[Close]

BLAST of Cmc03g0062771 vs. NCBI nr
Match: TYK19875.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S+QA+YRTHKGEVATNVL VCD KGDF+YV  GW+ S A+S ILRD ISR N
Sbjct: 43  YIKVNVPASDQARYRTHKGEVATNVLDVCDRKGDFVYVRAGWKGSAADSRILRDAISRPN 102

Query: 62  GLKVPKDNYLWHC 75
            LKV KD+Y  HC
Sbjct: 103 DLKVFKDSYQRHC 115

[Close]

BLAST of Cmc03g0062771 vs. NCBI nr
Match: TYK02751.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRTHKGEVATNVLG+CD KGDF+YVL GWE S A+S IL D ISR N
Sbjct: 106 YIKVNVPASDRARYRTHKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPN 165

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 166 GLKVPKGYY 174

[Close]

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL
Match: A0A5D3D546 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001680 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.3e-23
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GWE S+A+SCIL D ISR N
Sbjct: 106 YIKVNVPESDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSVADSCILHDAISRPN 165

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 166 GLKVPKGYY 174

[Close]

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL
Match: A0A5A7SIN0 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G001010 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.3e-23
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRT KGEVATNVLGVCD KGDF+YVL GW+ S A+SCILRD +SR N
Sbjct: 61  YIKVNVPASDRARYRTCKGEVATNVLGVCDTKGDFVYVLAGWKGSAADSCILRDALSRPN 120

Query: 62  GLKVPKDNY 71
           GLKVPKD Y
Sbjct: 121 GLKVPKDYY 129

[Close]

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL
Match: A0A5A7ULI4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00070 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++  S+QA+YRTHKGE+ATNVLGVCD KGDF+YVLVGW+ SIA+S ILRD ISR N
Sbjct: 67  YIKVNVSASDQARYRTHKGEMATNVLGVCDTKGDFVYVLVGWKGSIADSRILRDAISRPN 126

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 127 GLKVPKGYY 135

[Close]

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL
Match: A0A5D3BSN2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00050 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S++A+YRTHKGEVATNVLG+CD KGDF+YVL GWE S A+S IL D ISR N
Sbjct: 106 YIKVNVPASDRARYRTHKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPN 165

Query: 62  GLKVPKDNY 71
           GLKVPK  Y
Sbjct: 166 GLKVPKGYY 174

[Close]

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL
Match: A0A5D3D8F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00900 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2   YIKVDIPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISRLN 61
           YIKV++P S+QA+YRTHKGEVATNVL VCD KGDF+YV  GW+ S A+S ILRD ISR N
Sbjct: 43  YIKVNVPASDQARYRTHKGEVATNVLDVCDRKGDFVYVRAGWKGSAADSRILRDAISRPN 102

Query: 62  GLKVPKDNYLWHC 75
            LKV KD+Y  HC
Sbjct: 103 DLKVFKDSYQRHC 115

[Close]

BLAST of Cmc03g0062771 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 7   IPTSEQAKYRTHKGEVATNVLGVCDMKGDFIYVLVGWERSIANSCILRDTISR-LNGLKV 66
           +   +   +R  KG+++ N+L  C+   +F+YVL GWE S  +S +L D ++R  N L V
Sbjct: 38  VSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPV 97

Query: 67  PKDN 70
           P+++
Sbjct: 98  PEED 101

The following BLAST results are available for this feature:

BLAST of Cmc03g0062771 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064261.1	1.9e-22	73.91	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK18630.1 putative nucleas...	[more]
KAA0025494.1	1.9e-22	73.91	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0055437.1	5.6e-22	75.36	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08919.1 putative nucleas...	[more]
TYK19875.1	2.8e-21	69.86	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02751.1	2.8e-21	72.46	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0062771 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0062771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D546	9.3e-23	73.91	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SIN0	9.3e-23	73.91	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7ULI4	2.7e-22	75.36	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BSN2	1.3e-21	72.46	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3D8F7	1.3e-21	69.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc03g0062771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	1.1e-07	34.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..70
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062771.1	Cmc03g0062771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding