Cmc03g0062751 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062751
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 3045501 .. 3045968 (-)
RNA-Seq Expression	Cmc03g0062751
Synteny	Cmc03g0062751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAATTGCGATATTCCTAAGACCGCTTTCCGTTCCAGATACGGACATGACGAGTTTATTGTGATGTCCTTTGGTTTGACTAATGGTTCTGCAGCATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTTTTAGACATGTTTGTTATAGTTTTCATTAACGACATTTTGATTTACTCCAAGATTGAGGCCGAGCATGAGGAGCATTTGCATCAGATTTTGAAGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTCTCCACGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCCAGTGAGGAAGTTTTTGTGGATCCAGCAAAGATCGAAGCCGTTACCAATTGGTCTCGACCGTCTACAGTTTGCGAGATTCATAGTTTCTTGGGTTTAGCAGGTTACTACAGAAGGTTCGTGGAAGACTCTCGGATAGTCAGTCCTTCGACTTAG

mRNA sequence

ATGTCAAATTGCGATATTCCTAAGACCGCTTTCCGTTCCAGATACGGACATGACGAGTTTATTGTGATGTCCTTTGGTTTGACTAATGGTTCTGCAGCATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTTTTAGACATGTTTGTTATAGTTTTCATTAACGACATTTTGATTTACTCCAAGATTGAGGCCGAGCATGAGGAGCATTTGCATCAGATTTTGAAGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTCTCCACGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCCAGTGAGGAAGTTTTTGTGGATCCAGCAAAGATCGAAGCCGTTACCAATTGGTCTCGACCGTCTACAGTTTGCGAGATTCATAGTTTCTTGGGTTTAGCAGGTTACTACAGAAGGTTCGTGGAAGACTCTCGGATAGTCAGTCCTTCGACTTAG

Coding sequence (CDS)

ATGTCAAATTGCGATATTCCTAAGACCGCTTTCCGTTCCAGATACGGACATGACGAGTTTATTGTGATGTCCTTTGGTTTGACTAATGGTTCTGCAGCATTCATGGACTTGATGAATAGGGTGTTTAAGGATTTTTTAGACATGTTTGTTATAGTTTTCATTAACGACATTTTGATTTACTCCAAGATTGAGGCCGAGCATGAGGAGCATTTGCATCAGATTTTGAAGACTCTTCGAGCTAATAAGTTGTATGCCAAGTTCTCCACGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCCAGTGAGGAAGTTTTTGTGGATCCAGCAAAGATCGAAGCCGTTACCAATTGGTCTCGACCGTCTACAGTTTGCGAGATTCATAGTTTCTTGGGTTTAGCAGGTTACTACAGAAGGTTCGTGGAAGACTCTCGGATAGTCAGTCCTTCGACTTAG

Protein sequence

MSNCDIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIEAEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSRPSTVCEIHSFLGLAGYYRRFVEDSRIVSPST

Homology

[Close]

BLAST of Cmc03g0062751 vs. NCBI nr
Match: KAA0041536.1 (pol protein [Cucumis melo var. makuwa] >TYK24408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSNCDIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIY 60
           MSNCDIPKTAF SRYGHDEFIVMSFGLTNG AAFMDLMNRVFKDFLDMFVIVFINDILIY
Sbjct: 1   MSNCDIPKTAFHSRYGHDEFIVMSFGLTNGPAAFMDLMNRVFKDFLDMFVIVFINDILIY 60

Query: 61  SKIEAEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120
           SKIE EHEEHLHQ+LKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT
Sbjct: 61  SKIETEHEEHLHQVLKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120

Query: 121 NWSRPSTVCEIHSFLGLAGYYR 143
           NWSRPSTVCEIHSFLGLAGYYR
Sbjct: 121 NWSRPSTVCEIHSFLGLAGYYR 142

[Close]

BLAST of Cmc03g0062751 vs. NCBI nr
Match: KAA0061201.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 133/152 (87.50%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGHDEF+VMSFGLTN  A FMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 612 DIPKTAFRSRYGHDEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 671

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 672 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 731

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 732 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 763

[Close]

BLAST of Cmc03g0062751 vs. NCBI nr
Match: KAA0059657.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTN SA FMDLMN+VFKDFLD FVIVFI+DILIYSKIE
Sbjct: 110 DIPKTAFRSRYGHYEFVVMSFGLTNASAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKIE 169

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 170 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 229

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 230 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 261

[Close]

BLAST of Cmc03g0062751 vs. NCBI nr
Match: KAA0040542.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 133/152 (87.50%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTNG A FMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 465 DIPKTAFRSRYGHYEFVVMSFGLTNGPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 524

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 525 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 584

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 585 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 616

[Close]

BLAST of Cmc03g0062751 vs. NCBI nr
Match: KAA0066365.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTN  AAFMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 733 DIPKTAFRSRYGHYEFVVMSFGLTNAPAAFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 792

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW+R
Sbjct: 793 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTR 852

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 853 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 884

[Close]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 55/151 (36.42%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 6   IPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIEA 65
           + KTAF +++GH E++ M FGL N  A F   MN + +  L+   +V+++DI+++S    
Sbjct: 317 VSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLD 376

Query: 66  EHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSRP 125
           EH + L  + + L    L  +   CEF  ++ TFLGHV++ + +  +P KIEA+  +  P
Sbjct: 377 EHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIP 436

Query: 126 STVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           +   EI +FLGL GYYR+F+ + + I  P T
Sbjct: 437 TKPKEIKAFLGLTGYYRKFIPNFADIAKPMT 467

[Close]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-23
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0


Query: 1   MSNCDIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIY 60
           M    I KTAF ++ GH E++ M FGL N  A F   MN + +  L+   +V+++DI+I+
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SKIEAEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120
           S    EH   +  +   L    L  +   CEF  K+  FLGH+V+ + +  +P K++A+ 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 NWSRPSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           ++  P+   EI +FLGL GYYR+F+ + + I  P T
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMT 466

[Close]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-21
Identity = 50/156 (32.05%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MSNCDIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIY 60
           M   DIPKTAF +  G  EF+ + FGL N  A F  +++ + ++ +     V+I+DI+++
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SKIEAEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120
           S+    H ++L  +L +L    L        F   +V FLG++V+++ +  DP K+ A++
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 NWSRPSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
               P++V E+  FLG+  YYR+F++D +++  P T
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLT 383

[Close]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-19
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           D  KT+F    G  EF  + FGL N S+ F   ++ V ++ +     V+++D++I+S+ E
Sbjct: 291 DREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENE 350

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           ++H  H+  +LK L    +        F+ + V +LG +VS +    DP K++A+  +  
Sbjct: 351 SDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPE 410

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           P  V ++ SFLGLA YYR F++D + I  P T
Sbjct: 411 PDCVYKVRSFLGLASYYRVFIKDFAAIARPIT 442

[Close]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 53/147 (36.05%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 8   KTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIEAEH 67
           KTAF +  G  E+ VM FGL N  + F   M   F+D    FV V+++DILI+S+   EH
Sbjct: 703 KTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEH 762

Query: 68  EEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSRPST 127
            +HL  +L+ L+   L  K   C+F  ++  FLG+ +  +++     K  A+ ++  P T
Sbjct: 763 WKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKT 822

Query: 128 VCEIHSFLGLAGYYRRFVED-SRIVSP 154
           V +   FLG+  YYRRF+ + S+I  P
Sbjct: 823 VKQAQRFLGMINYYRRFIPNCSKIAQP 847

[Close]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL
Match: A0A5A7THJ8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001980 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.3e-74
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MSNCDIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIY 60
           MSNCDIPKTAF SRYGHDEFIVMSFGLTNG AAFMDLMNRVFKDFLDMFVIVFINDILIY
Sbjct: 1   MSNCDIPKTAFHSRYGHDEFIVMSFGLTNGPAAFMDLMNRVFKDFLDMFVIVFINDILIY 60

Query: 61  SKIEAEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120
           SKIE EHEEHLHQ+LKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT
Sbjct: 61  SKIETEHEEHLHQVLKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVT 120

Query: 121 NWSRPSTVCEIHSFLGLAGYYR 143
           NWSRPSTVCEIHSFLGLAGYYR
Sbjct: 121 NWSRPSTVCEIHSFLGLAGYYR 142

[Close]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL
Match: A0A5A7V5X5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00260 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 133/152 (87.50%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGHDEF+VMSFGLTN  A FMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 612 DIPKTAFRSRYGHDEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 671

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 672 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 731

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 732 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 763

[Close]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL
Match: A0A5A7UYD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00970 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.8e-68
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTN SA FMDLMN+VFKDFLD FVIVFI+DILIYSKIE
Sbjct: 110 DIPKTAFRSRYGHYEFVVMSFGLTNASAVFMDLMNKVFKDFLDSFVIVFIDDILIYSKIE 169

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 170 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 229

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 230 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 261

[Close]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL
Match: A0A5A7VKS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004330 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTN  AAFMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 733 DIPKTAFRSRYGHYEFVVMSFGLTNAPAAFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 792

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW+R
Sbjct: 793 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTR 852

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 853 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 884

[Close]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL
Match: A0A5A7TAT0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00960 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 133/152 (87.50%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 5   DIPKTAFRSRYGHDEFIVMSFGLTNGSAAFMDLMNRVFKDFLDMFVIVFINDILIYSKIE 64
           DIPKTAFRSRYGH EF+VMSFGLTNG A FMDLMNRVFKDFLD FVIVFI+DILIYSK E
Sbjct: 465 DIPKTAFRSRYGHYEFVVMSFGLTNGPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE 524

Query: 65  AEHEEHLHQILKTLRANKLYAKFSTCEFWLKKVTFLGHVVSSEEVFVDPAKIEAVTNWSR 124
           AEHEEHLHQ+L+TLRANKLYAKFS CEFWL+KVTFLGHVVSSE V VDPAKIEAVTNW R
Sbjct: 525 AEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 584

Query: 125 PSTVCEIHSFLGLAGYYRRFVED-SRIVSPST 156
           PSTV EI SFLGLAGYYRRFVED SRI SP T
Sbjct: 585 PSTVSEIRSFLGLAGYYRRFVEDFSRIASPLT 616

[Close]

BLAST of Cmc03g0062751 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-15
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 70  HLHQILKTLRANKLYAKFSTCEFWLKKVTFLG--HVVSSEEVFVDPAKIEAVTNWSRPST 129
           HL  +L+    ++ YA    C F   ++ +LG  H++S E V  DPAK+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 130 VCEIHSFLGLAGYYRRFVED-SRIVSPST 156
             E+  FLGL GYYRRFV++  +IV P T
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:

BLAST of Cmc03g0062751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041536.1	1.3e-73	97.18	pol protein [Cucumis melo var. makuwa] >TYK24408.1 pol protein [Cucumis melo var...	[more]
KAA0061201.1	1.1e-67	87.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059657.1	1.8e-67	87.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040542.1	2.4e-67	87.50	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066365.1	2.4e-67	87.50	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0062751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.3e-23	36.42	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.2e-23	35.26	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.6e-21	32.05	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.9e-19	32.89	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q99315	1.6e-18	36.05	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0062751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THJ8	6.3e-74	97.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001980 P...	[more]
A0A5A7V5X5	5.2e-68	87.50	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00260 PE...	[more]
A0A5A7UYD6	8.8e-68	87.50	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00970 PE=...	[more]
A0A5A7VKS7	1.2e-67	87.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7TAT0	1.2e-67	87.50	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc03g0062751 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.6e-15	41.57	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 4..29 e-value: 3.9E-30 score: 106.7
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..154
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..154
None	No IPR available	CDD	cd01647	RT_LTR	coord: 5..104 e-value: 4.80766E-40 score: 131.178
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..104 e-value: 3.9E-30 score: 106.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 114..155 e-value: 2.0E-10 score: 42.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 17..103 e-value: 1.4E-10 score: 41.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062751.1	Cmc03g0062751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding