Cmc03g0062481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 2744571 .. 2745470 (+)
RNA-Seq Expression	Cmc03g0062481
Synteny	Cmc03g0062481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGTAGTGCCGAAATCAATCTCGGAGTTACGCTCCTTCCTCGGGCTAGCAAATTACTATCGTCGATTTGTCAAGGGATTCTCCAAACGAGCAAGCCCACTGACTGAACTACTGAAAAAAGACGTTTACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTCATGATTGCGGATGCGACCAAACCTTTCGAAGTTGAGATAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATATGAAAGTCGAAAGTTGAATGCAGCCAAAAGGAGGTTTACTGTGTCCGAGAAAGAAATGCTCGCAGTTGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCATTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTAGCAGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTCACCTCCGGGGAAGCGAGATTGGTGGGTCGGTTAGAGACACCTTAAGAGAGTTCCTACAGAAAGATCATGTCGCACAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGACATTTTTGGGTCGAGGAAGACTTGTTAGTCACAAAGGACATTCGACTATATGTTCCTAGAGCAGGGGACTTAAGGAAGAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCATCCCGATGGCAGCGGACGTACGCCTTGCTGA

mRNA sequence

ATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGTAGTGCCGAAATCAATCTCGGAGTTACGCTCCTTCCTCGGGCTAGCAAATTACTATCGTCGATTTGTCAAGGGATTCTCCAAACGAGCAAGCCCACTGACTGAACTACTGAAAAAAGACGTTTACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTCATGATTGCGGATGCGACCAAACCTTTCGAAGTTGAGATAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATATGAAAGTCGAAAGTTGAATGCAGCCAAAAGGAGGTTTACTGTGTCCGAGAAAGAAATGCTCGCAGTTGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCATTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTAGCAGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTCACCTCCGGGGAAGCGAGATTGGTGGGTCGGTTAGAGACACCTTAAGAGAGTTCCTACAGAAAGATCATGTCGCACAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGACATTTTTGGGTCGAGGAAGACTTGTTAGTCACAAAGGACATTCGACTATATGTTCCTAGAGCAGGGGACTTAAGGAAGAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCATCCCGATGGCAGCGGACGTACGCCTTGCTGA

Coding sequence (CDS)

ATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGTAGTGCCGAAATCAATCTCGGAGTTACGCTCCTTCCTCGGGCTAGCAAATTACTATCGTCGATTTGTCAAGGGATTCTCCAAACGAGCAAGCCCACTGACTGAACTACTGAAAAAAGACGTTTACTGGAATTGGGACCCCGAGTGCCAAGCCGCCTTCGACGACCTAAAACAAGCCATGATGGAGGGGCCACTTCTCATGATTGCGGATGCGACCAAACCTTTCGAAGTTGAGATAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATATGAAAGTCGAAAGTTGAATGCAGCCAAAAGGAGGTTTACTGTGTCCGAGAAAGAAATGCTCGCAGTTGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCATTTGTAGTGAAGACGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTAGCAGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCTGATGCCCTAAGTCGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTCACCTCCGGGGAAGCGAGATTGGTGGGTCGGTTAGAGACACCTTAAGAGAGTTCCTACAGAAAGATCATGTCGCACAGAATGTCATGAATTTAGTGAAGGCGGGCAAAACACGACATTTTTGGGTCGAGGAAGACTTGTTAGTCACAAAGGACATTCGACTATATGTTCCTAGAGCAGGGGACTTAAGGAAGAAATTGTTGTATGAGTGTCACGACACTCTATGGGCTGGCCATCCCGATGGCAGCGGACGTACGCCTTGCTGA

Protein sequence

MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAKRRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNVMNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHPDGSGRTPC

Homology

[Close]

BLAST of Cmc03g0062481 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 565.5 bits (1456), Expect = 2.8e-157
Identity = 272/291 (93.47%), Postives = 280/291 (96.22%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 855  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 914

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQAAFD LKQAMMEGPLL IAD TKPFEVE DAS+YALGGVLLQNGHPI YESRKLN A+
Sbjct: 915  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAE 974

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 975  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1034

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGS+NQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1035 FDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNV 1094

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNLVKAGKTR FWVEEDLLVTK  RLYVPRAGDLRKKLLYECHDTLWAGHP
Sbjct: 1095 MNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHP 1145

[Close]

BLAST of Cmc03g0062481 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 564.7 bits (1454), Expect = 4.8e-157
Identity = 272/291 (93.47%), Postives = 280/291 (96.22%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQAAFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1025

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1026 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1085

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1086 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1136

[Close]

BLAST of Cmc03g0062481 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 872  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 931

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 932  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 991

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 992  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1051

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1052 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1111

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1112 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1162

[Close]

BLAST of Cmc03g0062481 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1055

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1056 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1115

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1116 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1166

[Close]

BLAST of Cmc03g0062481 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1055

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1056 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1115

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1116 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1166

[Close]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.4e-39
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 0


Query: 5   KIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWN-WDPECQA 64
           KI AI+ + +P    E+++FLGL  YYR+F+  F+  A P+T+ LKK++  +  +PE  +
Sbjct: 426 KIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS 485

Query: 65  AFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAKRRF 124
           AF  LK  + E P+L + D TK F +  DASD ALG VL Q+GHP++Y SR LN  +  +
Sbjct: 486 AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINY 545

Query: 125 TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAEFDF 184
           +  EKE+LA+V   + +R YLLG  F + +D+      +      SK  RW+  L+EFDF
Sbjct: 546 STIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDF 605

Query: 185 EFEHKKGSSNQAADALSR 202
           + ++ KG  N  ADALSR
Sbjct: 606 DIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-35
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 6   IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAF 65
           I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A 
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNG-----HPIAYESRKLNAAK 125
           +++KQ ++  P+L   D +K   +E DASD A+G VL Q       +P+ Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 RRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQ 185
             ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE-NKRLARWQ 806

Query: 186 EFLAEFDFEFEHKKGSSNQAADALSR 202
            FL +F+FE  ++ GS+N  ADALSR
Sbjct: 807 LFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-35
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 6   IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAF 65
           I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A 
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNG-----HPIAYESRKLNAAK 125
           +++KQ ++  P+L   D +K   +E DASD A+G VL Q       +P+ Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 RRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQ 185
             ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE-NKRLARWQ 806

Query: 186 EFLAEFDFEFEHKKGSSNQAADALSR 202
            FL +F+FE  ++ GS+N  ADALSR
Sbjct: 807 LFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-35
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 6   IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAF 65
           I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A 
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNG-----HPIAYESRKLNAAK 125
           +++KQ ++  P+L   D +K   +E DASD A+G VL Q       +P+ Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 RRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQ 185
             ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE-NKRLARWQ 806

Query: 186 EFLAEFDFEFEHKKGSSNQAADALSR 202
            FL +F+FE  ++ GS+N  ADALSR
Sbjct: 807 LFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-35
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 0


Query: 6   IAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPECQAAF 65
           I  +  W  PK+  ELR FLG  NY R+F+   S+   PL  LLKKDV W W P    A 
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNG-----HPIAYESRKLNAAK 125
           +++KQ ++  P+L   D +K   +E DASD A+G VL Q       +P+ Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 RRFTVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDNSATCHFFT---QPKLTSKQARWQ 185
             ++VS+KEMLA++  L+ WR YL  +   F + TD+       T   +P+   + ARWQ
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPE-NKRLARWQ 806

Query: 186 EFLAEFDFEFEHKKGSSNQAADALSR 202
            FL +F+FE  ++ GS+N  ADALSR
Sbjct: 807 LFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.4e-157
Identity = 272/291 (93.47%), Postives = 280/291 (96.22%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 855  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 914

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQAAFD LKQAMMEGPLL IAD TKPFEVE DAS+YALGGVLLQNGHPI YESRKLN A+
Sbjct: 915  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAE 974

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 975  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1034

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGS+NQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1035 FDFEFEHKKGSNNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHAAQNV 1094

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNLVKAGKTR FWVEEDLLVTK  RLYVPRAGDLRKKLLYECHDTLWAGHP
Sbjct: 1095 MNLVKAGKTRQFWVEEDLLVTKGNRLYVPRAGDLRKKLLYECHDTLWAGHP 1145

[Close]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.3e-157
Identity = 272/291 (93.47%), Postives = 280/291 (96.22%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQAAFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1025

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1026 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1085

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1086 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1136

[Close]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.7e-157
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1055

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1056 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1115

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1116 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1166

[Close]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.7e-157
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1055

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1056 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1115

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1116 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1166

[Close]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.7e-157
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1    MEEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPE 60
            MEEGKIAAIRDW +PKS+SELRSFLGLANYYRRFV+GFSKRASPLTELLKKDV+WNWDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQAAFDDLKQAMMEGPLLMIADATKPFEVEIDASDYALGGVLLQNGHPIAYESRKLNAAK 120
            CQ AFD LKQA+MEGPLL IAD TKPFEVE DASDYALGGVLLQNGHPIAYESRKLNAA+
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRFTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 180
            RR+TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQARWQEFLAE 1055

Query: 181  FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSVRDTLREFLQKDHVAQNV 240
            FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHL+GSEIGGSVRDTLREFLQKDH AQNV
Sbjct: 1056 FDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLQGSEIGGSVRDTLREFLQKDHAAQNV 1115

Query: 241  MNLVKAGKTRHFWVEEDLLVTKDIRLYVPRAGDLRKKLLYECHDTLWAGHP 292
            MNL KAGKTR FWVEEDLLVTK  RLYVPRAG LRKKLLYECHDTLWAGHP
Sbjct: 1116 MNLAKAGKTRQFWVEEDLLVTKGNRLYVPRAGGLRKKLLYECHDTLWAGHP 1166

[Close]

BLAST of Cmc03g0062481 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 2   EEGKIAAIRDWVVPKSISELRSFLGLANYYRRFVKGFSKRASPLTELLKKDVYWNWDPEC 61
           +  K+ A+  W  PK+ +ELR FLGL  YYRRFVK + K   PLTELLKK+    W    
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL-KWTEMA 106

Query: 62  QAAFDDLKQAMMEGPLLMIADATKPFEVEI 92
             AF  LK A+   P+L + D   PF   +
Sbjct: 107 ALAFKALKGAVTTLPVLALPDLKLPFVTRV 135

The following BLAST results are available for this feature:

BLAST of Cmc03g0062481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01597.1	2.8e-157	93.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07954.1	4.8e-157	93.47	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	1.4e-156	93.13	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.4e-156	93.13	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	1.4e-156	93.13	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0062481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	9.4e-39	41.92	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q9UR07	6.3e-35	40.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	6.3e-35	40.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	6.3e-35	40.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	6.3e-35	40.29	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc03g0062481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQE4	1.4e-157	93.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C9P8	2.3e-157	93.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	6.7e-157	93.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	6.7e-157	93.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	6.7e-157	93.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Cmc03g0062481 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-13	43.33	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..92 e-value: 4.7E-29 score: 102.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 57..151 e-value: 2.6E-32 score: 110.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 93..211 e-value: 8.9E-6 score: 27.5
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 1..205
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..205
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 88..202 e-value: 1.23499E-57 score: 179.226
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062481.1	Cmc03g0062481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding