Cmc03g0062321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein, putative
Location	CMiso1.1chr03: 2519767 .. 2520501 (+)
RNA-Seq Expression	Cmc03g0062321
Synteny	Cmc03g0062321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTAGATAGCAAAGCTATTAACCGAATTACTATGAAGTATTGGTTTCCTATCCCTCGGATTGGAGATCTTTTAGACCAACTAGGCAAGGCTACGATCTTCTCAAAGATTAATTTAAGGAGCGGCTATCACCAAATACGAATCAGACCAGGAGATGAGTGGAAGATAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTAATGCCTTTTGGCTTATCCAATGCGCCAAGCACTTTTATGAGGTTGATGAATCAAGTACTACATCCATTCTTAAACCAGTTTATAGTGGTTTACTTTGATGACATCCTTGTGTATAGCAGCAGTCGTGAAGACCATCTACAACACCTAAGCAAATTGTTTCAAGTTTTGACTGAAACAGAATTATATATAAATCCAAAGAAGTGCACATTTCTCACCAAGGAAATCGTCTTTCTTGGGTTCTTGATCAAAGAAGGAAAGATAGGGATGAAACCTAAGAAAATAGAAGCTTTACAATCTTGGCCAGCACCAACATCCATCAAAGAAGTGCAAGCTTTTCTTGGCTTGGCATCTTTCTACAGAAGATTCATCAGGGATTTTAGCTTAATAATGGCCCCCCTAACCGACTGTTTAAAGAAAGGAAATTTCAAATGGGAACATATGCAGCAACAGAGTTTTGAAGAAATTAAAAGGAGATTAACTTCTAGCCCTATTCTTCAATTGCCAGATTTCGCATCAACATTTTAA

mRNA sequence

ATGTGTGTAGATAGCAAAGCTATTAACCGAATTACTATGAAGTATTGGTTTCCTATCCCTCGGATTGGAGATCTTTTAGACCAACTAGGCAAGGCTACGATCTTCTCAAAGATTAATTTAAGGAGCGGCTATCACCAAATACGAATCAGACCAGGAGATGAGTGGAAGATAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTAATGCCTTTTGGCTTATCCAATGCGCCAAGCACTTTTATGAGGTTGATGAATCAAGTACTACATCCATTCTTAAACCAGTTTATAGTGGTTTACTTTGATGACATCCTTGTGTATAGCAGCAGTCGTGAAGACCATCTACAACACCTAAGCAAATTGTTTCAAGTTTTGACTGAAACAGAATTATATATAAATCCAAAGAAGTGCACATTTCTCACCAAGGAAATCGTCTTTCTTGGGTTCTTGATCAAAGAAGGAAAGATAGGGATGAAACCTAAGAAAATAGAAGCTTTACAATCTTGGCCAGCACCAACATCCATCAAAGAAGTGCAAGCTTTTCTTGGCTTGGCATCTTTCTACAGAAGATTCATCAGGGATTTTAGCTTAATAATGGCCCCCCTAACCGACTGTTTAAAGAAAGGAAATTTCAAATGGGAACATATGCAGCAACAGAGTTTTGAAGAAATTAAAAGGAGATTAACTTCTAGCCCTATTCTTCAATTGCCAGATTTCGCATCAACATTTTAA

Coding sequence (CDS)

ATGTGTGTAGATAGCAAAGCTATTAACCGAATTACTATGAAGTATTGGTTTCCTATCCCTCGGATTGGAGATCTTTTAGACCAACTAGGCAAGGCTACGATCTTCTCAAAGATTAATTTAAGGAGCGGCTATCACCAAATACGAATCAGACCAGGAGATGAGTGGAAGATAGCCTTCAAGACAAATGAAGGATTGTTTGAATGGTTGGTAATGCCTTTTGGCTTATCCAATGCGCCAAGCACTTTTATGAGGTTGATGAATCAAGTACTACATCCATTCTTAAACCAGTTTATAGTGGTTTACTTTGATGACATCCTTGTGTATAGCAGCAGTCGTGAAGACCATCTACAACACCTAAGCAAATTGTTTCAAGTTTTGACTGAAACAGAATTATATATAAATCCAAAGAAGTGCACATTTCTCACCAAGGAAATCGTCTTTCTTGGGTTCTTGATCAAAGAAGGAAAGATAGGGATGAAACCTAAGAAAATAGAAGCTTTACAATCTTGGCCAGCACCAACATCCATCAAAGAAGTGCAAGCTTTTCTTGGCTTGGCATCTTTCTACAGAAGATTCATCAGGGATTTTAGCTTAATAATGGCCCCCCTAACCGACTGTTTAAAGAAAGGAAATTTCAAATGGGAACATATGCAGCAACAGAGTTTTGAAGAAATTAAAAGGAGATTAACTTCTAGCCCTATTCTTCAATTGCCAGATTTCGCATCAACATTTTAA

Protein sequence

MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDFASTF

Homology

[Close]

BLAST of Cmc03g0062321 vs. NCBI nr
Match: KAA0047745.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK02379.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 2.1e-102
Identity = 188/215 (87.44%), Postives = 198/215 (92.09%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRIT+KY F IPRIGDLLDQLGK  +FSKI+LRSGYHQIRIR GDEWK  FK
Sbjct: 30  MCVDSRAINRITVKYQFLIPRIGDLLDQLGKVIVFSKIDLRSGYHQIRIRLGDEWKTTFK 89

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           TNEGLFEWLV+PFGLSNAPS FMRLMNQVLHPFLNQFIVV    ILVYSSSREDHLQHL 
Sbjct: 90  TNEGLFEWLVIPFGLSNAPSIFMRLMNQVLHPFLNQFIVV----ILVYSSSREDHLQHLR 149

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQ
Sbjct: 150 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMEPKKVEAIQSWPAPTSIKEVQ 209

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWE 216
           AFL LASFYRRFIR+FS I APLTDCLKKG FKW+
Sbjct: 210 AFLCLASFYRRFIRNFSSIAAPLTDCLKKGIFKWD 240

[Close]

BLAST of Cmc03g0062321 vs. NCBI nr
Match: KAA0062943.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 382.5 bits (981), Expect = 2.7e-102
Identity = 188/244 (77.05%), Postives = 200/244 (81.97%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRIT+KYWFPIP++GDLLDQLGKA +FSKI+LRS YHQIRIRP DEWK  FK
Sbjct: 535 MCVDSRAINRITVKYWFPIPQVGDLLDQLGKAAVFSKIDLRSDYHQIRIRPEDEWKTTFK 594

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
            NEGLFEWL MPFGLSNAPSTF                          S SREDHLQHL 
Sbjct: 595 INEGLFEWLAMPFGLSNAPSTFT-------------------------SRSREDHLQHLR 654

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           KLFQVL E ELYINPKKCTFL KEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQ
Sbjct: 655 KLFQVLIEIELYINPKKCTFLIKEIVFLGFLIKEGKIGMEPKKVEAIQSWPAPTSIKEVQ 714

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDF 240
           AFLGLASFY+RFIR+FS I+ PLTD LKK NFKWEHMQQQSFEEIKRRLTSSPILQLPDF
Sbjct: 715 AFLGLASFYKRFIRNFSSIVTPLTDYLKKENFKWEHMQQQSFEEIKRRLTSSPILQLPDF 753

Query: 241 ASTF 245
            S F
Sbjct: 775 TSPF 753

[Close]

BLAST of Cmc03g0062321 vs. NCBI nr
Match: TYK16315.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 5.7e-100
Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 13  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMP 72
           MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYHQIRIRPGDEWK AF TNE LF+WLVMP
Sbjct: 1   MKYRFPIPRIGDLLDQLGKATVFSKIDLRIGYHQIRIRPGDEWKTAFNTNEELFKWLVMP 60

Query: 73  FGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKLFQVLTETELY 132
           FGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILV SSSREDHLQHL KLFQVLTE ELY
Sbjct: 61  FGLSNAPSTFMRLMNQVLYPFLNQFIVVYFDDILVCSSSREDHLQHLRKLFQVLTEIELY 120

Query: 133 INPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRF 192
           INPKK TFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RF
Sbjct: 121 INPKKYTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRF 180

Query: 193 IRDFSLIMAPLTDCLKKGNFKWEHMQQ 220
           IR+FS I+APLT+ LKKGNFKWEHMQQ
Sbjct: 181 IRNFSSIVAPLTNYLKKGNFKWEHMQQ 207

[Close]

BLAST of Cmc03g0062321 vs. NCBI nr
Match: KAA0063033.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-99
Identity = 180/207 (86.96%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 13  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMP 72
           MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYH    RPGDEWK AF TNE LF+WLVMP
Sbjct: 1   MKYRFPIPRIGDLLDQLGKATVFSKIDLRIGYH----RPGDEWKTAFNTNEELFKWLVMP 60

Query: 73  FGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKLFQVLTETELY 132
           FGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILVYSSSREDHLQHL KLFQVLTE ELY
Sbjct: 61  FGLSNAPSTFMRLMNQVLYPFLNQFIVVYFDDILVYSSSREDHLQHLRKLFQVLTEIELY 120

Query: 133 INPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRF 192
           INPKKCTFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RF
Sbjct: 121 INPKKCTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRF 180

Query: 193 IRDFSLIMAPLTDCLKKGNFKWEHMQQ 220
           IR+FS I+APLT+CLKKGNFKWEHMQQ
Sbjct: 181 IRNFSSIVAPLTNCLKKGNFKWEHMQQ 203

[Close]

BLAST of Cmc03g0062321 vs. NCBI nr
Match: KAA0051933.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 167/244 (68.44%), Postives = 204/244 (83.61%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRI +KY FPIPRI DLLDQLG A IFSKI+LRSGY QIRIRPGDEWK AFK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           TNEGLF+WLVMPFGLSNAPSTFMRLMNQVLHPFLN+F++VYFDDIL +S + ++H  HL 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           +LF+ L + ELYIN KKC F  +EI FLGF+I++  I M  KK+EA+++WP PTS+KEVQ
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQ 180

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDF 240
           AF+GLASFYR+FI +F  I AP+ DCLKKG+F W + +Q SFE +K +L+++PIL+LPDF
Sbjct: 181 AFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKLSNNPILELPDF 240

Query: 241 ASTF 245
           +  F
Sbjct: 241 SQPF 244

[Close]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-54
Identity = 105/245 (42.86%), Postives = 156/245 (63.67%), Query Frame = 0


Query: 3   VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTN 62
           +D + +N IT+    PIP + ++L +LG+   F+ I+L  G+HQI + P    K AF T 
Sbjct: 266 IDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTK 325

Query: 63  EGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKL 122
            G +E+L MPFGL NAP+TF R MN +L P LN+  +VY DDI+V+S+S ++HLQ L  +
Sbjct: 326 HGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLV 385

Query: 123 FQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAF 182
           F+ L +  L +   KC FL +E  FLG ++    I   P+KIEA+Q +P PT  KE++AF
Sbjct: 386 FEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAF 445

Query: 183 LGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQ---SFEEIKRRLTSSPILQLPD 242
           LGL  +YR+FI +F+ I  P+T CLKK N K +    +   +F+++K  ++  PIL++PD
Sbjct: 446 LGLTGYYRKFIPNFADIAKPMTKCLKK-NMKIDTTNPEYDSAFKKLKYLISEDPILKVPD 505

Query: 243 FASTF 245
           F   F
Sbjct: 506 FTKKF 509

[Close]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-52
Identity = 103/246 (41.87%), Postives = 152/246 (61.79%), Query Frame = 0


Query: 3   VDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTN 62
           +D + +N IT+   +PIP + ++L +LGK   F+ I+L  G+HQI +      K AF T 
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 63  EGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKL 122
            G +E+L MPFGL NAP+TF R MN +L P LN+  +VY DDI+++S+S  +HL  +  +
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 123 FQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAF 182
           F  L +  L +   KC FL KE  FLG ++    I   P K++A+ S+P PT  KE++AF
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 183 LGLASFYRRFIRDFSLIMAPLTDCLKK----GNFKWEHMQQQSFEEIKRRLTSSPILQLP 242
           LGL  +YR+FI +++ I  P+T CLKK       K E++  ++FE++K  +   PILQLP
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYI--EAFEKLKALIIRDPILQLP 504

Query: 243 DFASTF 245
           DF   F
Sbjct: 505 DFEKKF 508

[Close]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-48
Identity = 99/237 (41.77%), Postives = 144/237 (60.76%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           +CVD + +N+ T+   FP+PRI +LL ++G A IF+ ++L SGYHQI + P D +K AF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           T  G +E+ VMPFGL NAPSTF R M         +F+ VY DDIL++S S E+H +HL 
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 793

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
            + + L    L +  KKC F ++E  FLG+ I   KI     K  A++ +P P ++K+ Q
Sbjct: 794 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 853

Query: 181 AFLGLASFYRRFIRDFSLIMAP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL 236
            FLG+ ++YRRFI + S I  P  L  C K    +W   Q ++ E++K  L +SP+L
Sbjct: 854 RFLGMINYYRRFIPNCSKIAQPIQLFICDKS---QWTEKQDKAIEKLKAALCNSPVL 905

[Close]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 191.8 bits (486), Expect = 9.0e-48
Identity = 98/237 (41.35%), Postives = 144/237 (60.76%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           +CVD + +N+ T+   FP+PRI +LL ++G A IF+ ++L SGYHQI + P D +K AF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           T  G +E+ VMPFGL NAPSTF R M         +F+ VY DDIL++S S E+H +HL 
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLD 767

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
            + + L    L +  KKC F ++E  FLG+ I   KI     K  A++ +P P ++K+ Q
Sbjct: 768 TVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQ 827

Query: 181 AFLGLASFYRRFIRDFSLIMAP--LTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPIL 236
            FLG+ ++YRRFI + S I  P  L  C K    +W   Q ++ +++K  L +SP+L
Sbjct: 828 RFLGMINYYRRFIPNCSKIAQPIQLFICDKS---QWTEKQDKAIDKLKDALCNSPVL 879

[Close]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.9e-46
Identity = 93/242 (38.43%), Postives = 143/242 (59.09%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           M VD K +N+      +P+P I  LL ++  +TIF+K++L+S YH IR+R GDE K+AF+
Sbjct: 464 MVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
              G+FE+LVMP+G+S AP+ F   +N +L       +V Y DDIL++S S  +H++H+ 
Sbjct: 524 CPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVK 583

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
            + Q L    L IN  KC F   ++ F+G+ I E       + I+ +  W  P + KE++
Sbjct: 584 DVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELR 643

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKG-NFKWEHMQQQSFEEIKRRLTSSPILQLPD 240
            FLG  ++ R+FI   S +  PL + LKK   +KW   Q Q+ E IK+ L S P+L+  D
Sbjct: 644 QFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFD 703

Query: 241 FA 242
           F+
Sbjct: 704 FS 705

[Close]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL
Match: A0A5D3BW84 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00820 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.0e-102
Identity = 188/215 (87.44%), Postives = 198/215 (92.09%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRIT+KY F IPRIGDLLDQLGK  +FSKI+LRSGYHQIRIR GDEWK  FK
Sbjct: 30  MCVDSRAINRITVKYQFLIPRIGDLLDQLGKVIVFSKIDLRSGYHQIRIRLGDEWKTTFK 89

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           TNEGLFEWLV+PFGLSNAPS FMRLMNQVLHPFLNQFIVV    ILVYSSSREDHLQHL 
Sbjct: 90  TNEGLFEWLVIPFGLSNAPSIFMRLMNQVLHPFLNQFIVV----ILVYSSSREDHLQHLR 149

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQ
Sbjct: 150 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMEPKKVEAIQSWPAPTSIKEVQ 209

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWE 216
           AFL LASFYRRFIR+FS I APLTDCLKKG FKW+
Sbjct: 210 AFLCLASFYRRFIRNFSSIAAPLTDCLKKGIFKWD 240

[Close]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL
Match: A0A5A7V4G7 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00370 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.3e-102
Identity = 188/244 (77.05%), Postives = 200/244 (81.97%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRIT+KYWFPIP++GDLLDQLGKA +FSKI+LRS YHQIRIRP DEWK  FK
Sbjct: 535 MCVDSRAINRITVKYWFPIPQVGDLLDQLGKAAVFSKIDLRSDYHQIRIRPEDEWKTTFK 594

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
            NEGLFEWL MPFGLSNAPSTF                          S SREDHLQHL 
Sbjct: 595 INEGLFEWLAMPFGLSNAPSTFT-------------------------SRSREDHLQHLR 654

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           KLFQVL E ELYINPKKCTFL KEIVFLGFLIKEGKIGM+PKK+EA+QSWPAPTSIKEVQ
Sbjct: 655 KLFQVLIEIELYINPKKCTFLIKEIVFLGFLIKEGKIGMEPKKVEAIQSWPAPTSIKEVQ 714

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDF 240
           AFLGLASFY+RFIR+FS I+ PLTD LKK NFKWEHMQQQSFEEIKRRLTSSPILQLPDF
Sbjct: 715 AFLGLASFYKRFIRNFSSIVTPLTDYLKKENFKWEHMQQQSFEEIKRRLTSSPILQLPDF 753

Query: 241 ASTF 245
            S F
Sbjct: 775 TSPF 753

[Close]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL
Match: A0A5D3CXW2 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00920 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.8e-100
Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 0


Query: 13  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMP 72
           MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYHQIRIRPGDEWK AF TNE LF+WLVMP
Sbjct: 1   MKYRFPIPRIGDLLDQLGKATVFSKIDLRIGYHQIRIRPGDEWKTAFNTNEELFKWLVMP 60

Query: 73  FGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKLFQVLTETELY 132
           FGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILV SSSREDHLQHL KLFQVLTE ELY
Sbjct: 61  FGLSNAPSTFMRLMNQVLYPFLNQFIVVYFDDILVCSSSREDHLQHLRKLFQVLTEIELY 120

Query: 133 INPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRF 192
           INPKK TFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RF
Sbjct: 121 INPKKYTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRF 180

Query: 193 IRDFSLIMAPLTDCLKKGNFKWEHMQQ 220
           IR+FS I+APLT+ LKKGNFKWEHMQQ
Sbjct: 181 IRNFSSIVAPLTNYLKKGNFKWEHMQQ 207

[Close]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL
Match: A0A5A7V4Q2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001450 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 6.2e-100
Identity = 180/207 (86.96%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 13  MKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFKTNEGLFEWLVMP 72
           MKY FPIPRIGDLLDQLGKAT+FSKI+LR GYH    RPGDEWK AF TNE LF+WLVMP
Sbjct: 1   MKYRFPIPRIGDLLDQLGKATVFSKIDLRIGYH----RPGDEWKTAFNTNEELFKWLVMP 60

Query: 73  FGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLSKLFQVLTETELY 132
           FGLSNAPSTFMRLMNQVL+PFLNQFIVVYFDDILVYSSSREDHLQHL KLFQVLTE ELY
Sbjct: 61  FGLSNAPSTFMRLMNQVLYPFLNQFIVVYFDDILVYSSSREDHLQHLRKLFQVLTEIELY 120

Query: 133 INPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQAFLGLASFYRRF 192
           INPKKCTFLTKEIVFLGFLIKEGKIG++PKK+EA+QSWP PT IKEVQ FLGLASFY+RF
Sbjct: 121 INPKKCTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRF 180

Query: 193 IRDFSLIMAPLTDCLKKGNFKWEHMQQ 220
           IR+FS I+APLT+CLKKGNFKWEHMQQ
Sbjct: 181 IRNFSSIVAPLTNCLKKGNFKWEHMQQ 203

[Close]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL
Match: A0A5D3CPI6 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00330 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.6e-95
Identity = 167/244 (68.44%), Postives = 204/244 (83.61%), Query Frame = 0


Query: 1   MCVDSKAINRITMKYWFPIPRIGDLLDQLGKATIFSKINLRSGYHQIRIRPGDEWKIAFK 60
           MCVDS+AINRI +KY FPIPRI DLLDQLG A IFSKI+LRSGY QIRIRPGDEWK AFK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 61  TNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHPFLNQFIVVYFDDILVYSSSREDHLQHLS 120
           TNEGLF+WLVMPFGLSNAPSTFMRLMNQVLHPFLN+F++VYFDDIL +S + ++H  HL 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 121 KLFQVLTETELYINPKKCTFLTKEIVFLGFLIKEGKIGMKPKKIEALQSWPAPTSIKEVQ 180
           +LF+ L + ELYIN KKC F  +EI FLGF+I++  I M  KK+EA+++WP PTS+KEVQ
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQ 180

Query: 181 AFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSPILQLPDF 240
           AF+GLASFYR+FI +F  I AP+ DCLKKG+F W + +Q SFE +K +L+++PIL+LPDF
Sbjct: 181 AFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKLSNNPILELPDF 240

Query: 241 ASTF 245
           +  F
Sbjct: 241 SQPF 244

[Close]

BLAST of Cmc03g0062321 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-22
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 116 LQHLSKLFQVLTETELYINPKKCTFLTKEIVFLG--FLIKEGKIGMKPKKIEALQSWPAP 175
           + HL  + Q+  + + Y N KKC F   +I +LG   +I    +   P K+EA+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 176 TSIKEVQAFLGLASFYRRFIRDFSLIMAPLTDCLKKGNFKWEHMQQQSFEEIKRRLTSSP 235
            +  E++ FLGL  +YRRF++++  I+ PLT+ LKK + KW  M   +F+ +K  +T+ P
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 236 ILQLPDFASTF 245
           +L LPD    F
Sbjct: 121 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc03g0062321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047745.1	2.1e-102	87.44	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK02379.1 D...	[more]
KAA0062943.1	2.7e-102	77.05	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
TYK16315.1	5.7e-100	87.44	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0063033.1	1.3e-99	86.96	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0051933.1	3.2e-95	68.44	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag...	[more]

BLAST of Cmc03g0062321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.7e-54	42.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.1e-52	41.87	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q7LHG5	3.1e-48	41.77	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	9.0e-48	41.35	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	4.9e-46	38.43	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc03g0062321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW84	1.0e-102	87.44	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V4G7	1.3e-102	77.05	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3CXW2	2.8e-100	87.44	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V4Q2	6.2e-100	86.96	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3CPI6	1.6e-95	68.44	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Cmc03g0062321 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.0e-22	36.64	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 162..243 e-value: 1.4E-30 score: 107.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 17..152 e-value: 3.7E-61 score: 208.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..150 e-value: 7.5E-30 score: 104.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..152 score: 13.098412
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..77 e-value: 3.7E-61 score: 208.1
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..236
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..236
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..152 e-value: 9.98683E-73 score: 217.848
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062321.1	Cmc03g0062321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding