Cmc03g0062021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0062021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	CMiso1.1chr03: 2205248 .. 2207647 (+)
RNA-Seq Expression	Cmc03g0062021
Synteny	Cmc03g0062021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATCCAATGCGGTTGCGGTCGGAGGTGACATTATCCAATTCCTATTCGAAAACAAAATTTTGAATTTCGGCTTTCCGGAAATGGCTCTGCTCAACGCTTCATTATGTTGTTCCACTCCCAAAATCCATTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCCCGGCCCCCATTCTACTTCTCAGGTAAACTCCGCCCCTCCATTTCCTCTCCCAATTTCCTCTCCTTTCTTTTCAAATGCTTTCATTTTACCCACGATGTGAAGGTATTCAACCAACAACTTGAAGCTACAAGGAATTTGGTTCTTTCCCTTGGACAACCCACTTTTCTCGTTTTCATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTTATTTCCTCATTTTCATTATCATATCTCTATGTTTTGTGTTGTATTGTACTGTTTGATTTATTTTTGGTAATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGACTTCAAAACGGTTTCAACCCAAGTTTCATTATTTCTTTTGTTTGTACTTGTACTACAGTAATATGTGGTTGTGACATTGTTTTTTTTCTCTCTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAAGTTATTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATATTTAGGATTTTCTATCCAGTTAATGCTGACTTCAATTCTTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTAGAATTAAATGCTTCTTTATTTAATCTCTAGTTTGCCCCTTTTCAGACTTTCAAATTTGAATGATTATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATATGCATAACTTGTTAGTTAGGACTGGGGGTCAAATTTTGCAATCTCAGTCTTGAATGTTAAAAAATTTGATCAAATACGATAGGAAACTACTTTGCAAAAAGTATTCGTGGGATACAATAACCATGAACTGTGTATGCAGTCTGAGATGCCGAGTAACCTACAGTTTTTATCTGAGATTTTACATTCAAGTGTCCATTGATGTTAGAATACAGTGAAGTTATAACTTTATACTGAATGGTTGGTTTTTTCTGCTTTGGGCAGGCAAATTTAACCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGGTATGAAAACCCAACATCTATTTTGCCTTTAGTATCTCATCGGGGATCCTCTTCTTTTTTATTTGTTCATACTCTCTCTCCCCACGTTCAATTAATACTTTCTATATATTTTCCAAAGGTACTTTATACATACTTGAAAGGTTCTATTAGTTCCTTATAAGACCTAAAAGTCTAGTTTAGGAGATTTGAAAGGCGAGAATGACCAAGATTTACATTTGTTACACAAATAGAATCTGATTCTGTTTTTCTTAGTATGTTTCTTGTAAACCCAACATTTATGTTGCTTTTAGTATCTCATTGGGGATCCTCTCATCTCCATTATTATTTTAGATGCCATGATGCATTAACATAGGTTGTTATTCCAACCTCGCTGTGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCTGAAACTCATTTTTTTCAGCAATGTGCTTAGACGAAAGAGTAGTAGGAAAATGCAATTCAACTAACAATGGATATAATTTTCTGAAAACTAACAATGGAGTGGTTGTACGAAGAAATACTATGCATAATTTACCTCATAATGGCAGACTTCACTGACGTTCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAGACAAATTCTTGTGTTTCTTTGGTTTGACTATAAATGGTTCATGATAAATAGAACAGGAAACTTACTCATTTTTGTTTACAGGGTAAACCCAACTACTGGAAATGCAACTCGAGAGACCTTGCTCTGTGATTGACGCTCAAATTATATGGCAAGCTATTGAAGTACAAGAACCGTATAGATCAACTTTAAAATGTGTAAAGTTTTCAATAATCATATCAGTGTACCCAATCCAATGAGTTCAATTTTGTCATTCATTTGATCGTGTCTTATTATTTGGTTTGTCTTTGTCTATATCATAAAGCTTAACGTAAGTAACATGTTCAATAACACATTGGATTTCTTCGTTGTTGAATTCAACACCCAGATCTTTTACAAACAG

mRNA sequence

TTATCCAATGCGGTTGCGGTCGGAGGTGACATTATCCAATTCCTATTCGAAAACAAAATTTTGAATTTCGGCTTTCCGGAAATGGCTCTGCTCAACGCTTCATTATGTTGTTCCACTCCCAAAATCCATTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCCCGGCCCCCATTCTACTTCTCAGGTATTCAACCAACAACTTGAAGCTACAAGGAATTTGGTTCTTTCCCTTGGACAACCCACTTTTCTCGTTTTCATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGACTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAAGTTATTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAACCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGACTTCACTGACGTTCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACTCGAGAGACCTTGCTCTGTGATTGACGCTCAAATTATATGGCAAGCTATTGAAGTACAAGAACCGTATAGATCAACTTTAAAATGTGTAAAGTTTTCAATAATCATATCAGTGTACCCAATCCAATGAGTTCAATTTTGTCATTCATTTGATCGTGTCTTATTATTTGGTTTGTCTTTGTCTATATCATAAAGCTTAACGTAAGTAACATGTTCAATAACACATTGGATTTCTTCGTTGTTGAATTCAACACCCAGATCTTTTACAAACAG

Coding sequence (CDS)

ATGGCTCTGCTCAACGCTTCATTATGTTGTTCCACTCCCAAAATCCATTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCCCGGCCCCCATTCTACTTCTCAGGTATTCAACCAACAACTTGAAGCTACAAGGAATTTGGTTCTTTCCCTTGGACAACCCACTTTTCTCGTTTTCATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGACTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAAGTTATTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAACCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGACTTCACTGACGTTCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACTCGAGAGACCTTGCTCTGTGATTGA

Protein sequence

MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD

Homology

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BLAST of Cmc03g0062021 vs. NCBI nr
Match: XP_008441390.1 (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA0041434.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa] >TYK24308.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60
           MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120
           ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180
           LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

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BLAST of Cmc03g0062021 vs. NCBI nr
Match: XP_004138481.2 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 hypothetical protein Csa_005512 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 28  MALLNASLCCSTPKIPSRSHLLLPPSIS--LHSTSQVFNQQLQATRNFVLSLGQPTFLAF 87

Query: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147

Query: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207

Query: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241

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BLAST of Cmc03g0062021 vs. NCBI nr
Match: XP_022133545.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 189/220 (85.91%), Postives = 198/220 (90.00%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQ----PT 60
           MALLNASLCCST +I    HL LPPSIS   H T  V  QQLEA+RNL+LS+G+     T
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSIS--AHPTPPVLKQQLEASRNLILSVGESASKAT 60

Query: 61  FLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120
           FL  +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK
Sbjct: 61  FLALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120

Query: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTI 180
           GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTI
Sbjct: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI 180

Query: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
            GADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 EGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

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BLAST of Cmc03g0062021 vs. NCBI nr
Match: XP_038883977.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93
Identity = 196/237 (82.70%), Postives = 205/237 (86.50%), Query Frame = 0


Query: 1   MALLNASLCC-STPKIHSRSHLLLPPSI----SPGPHST------------SQVFNQQLE 60
           MALLNASLCC ST +I SR HL LP S+    SP P S+             +VFNQQLE
Sbjct: 1   MALLNASLCCSSTSRIPSRPHLPLPLSVAAHSSPLPLSSPFSSIPFISTTNMKVFNQQLE 60

Query: 61  ATRNLVLSLGQ----PTFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKT 120
           ATR+LVLSLG+     +FL F+SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFS KT
Sbjct: 61  ATRHLVLSLGESASKASFLAFLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSWKT 120

Query: 121 LIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNAN 180
           LIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NAN
Sbjct: 121 LIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNAN 180

Query: 181 LEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           LEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 LEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 237

[Close]

BLAST of Cmc03g0062021 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 4.6e-93
Identity = 188/220 (85.45%), Postives = 197/220 (89.55%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQ----PT 60
           MALLNASLC ST +I SR HL LPPS+S    S  QV   Q+EATRN VLS+G+     +
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVS--AFSNPQVMKHQVEATRNFVLSVGESASKAS 60

Query: 61  FLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120
           FL  ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFK
Sbjct: 61  FLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFK 120

Query: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTI 180
           GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGS I
Sbjct: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSII 180

Query: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 278.5 bits (711), Expect = 6.5e-74
Identity = 158/224 (70.54%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 3   LLNASL--CCSTPKIHSRSHLLLPPSIS---PGPHSTSQVFNQQLEA-TRNLVLSLGQP- 62
           L N SL  CC+   I  +  L  P S S   P   S SQ   + + +  R++V SLG+  
Sbjct: 4   LSNVSLFSCCN---ISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 63  ---TFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 122
              +    +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 123 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFR 182
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NLTNANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 183 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

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BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.9e-15
Identity = 56/126 (44.44%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 90  LSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLAN 149
           L G+DFSGK+L    F  + L  +NF  A L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 150 VTKANLTNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 209
              A+LTNA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 210 RETLLC 216
           RE+L C
Sbjct: 174 RESLGC 178

[Close]

BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.6e-10
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 78  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGAD 137
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 138 LSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 197
            S ADL         + +ANLTNA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 198 CKVADGVNPTTGNATRETLLC 216
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-07
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 86  RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 145
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 146 SLANVTKANLTNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 193
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

[Close]

BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-06
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 87  GQDLSGKDFSGKTL---------IKQDFK-------TSILRQANFKGAKLLGASFFDADL 146
           G DL G D SG TL         ++Q+ K        +IL +A+ +GA + G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 147 TGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGADFTDVPL 187
           + A+L +A+LR  D     + KA+L+ ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

[Close]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL
Match: A0A5A7TDC5 (Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00790 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60
           MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120
           ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180
           LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL
Match: A0A1S3B3C6 (thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485520 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.0e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60
           MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120
           ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180
           LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL
Match: A0A0A0KA71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.0e-107
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSIS--LHSTSQVFNQQLQATRNFVLSLGQPTFLAF 60

Query: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 120

Query: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 180

Query: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

[Close]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 5.3e-95
Identity = 189/220 (85.91%), Postives = 198/220 (90.00%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQ----PT 60
           MALLNASLCCST +I    HL LPPSIS   H T  V  QQLEA+RNL+LS+G+     T
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSIS--AHPTPPVLKQQLEASRNLILSVGESASKAT 60

Query: 61  FLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120
           FL  +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK
Sbjct: 61  FLALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120

Query: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTI 180
           GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTI
Sbjct: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI 180

Query: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
            GADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 EGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 188/220 (85.45%), Postives = 197/220 (89.55%), Query Frame = 0


Query: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQ----PT 60
           MALLNASLC ST +I SR HL LPPS+S    S  QV   Q+EATRN VLS+G+     +
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVS--AFSNPQVMKHQVEATRNFVLSVGESASKAS 60

Query: 61  FLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFK 120
           FL  ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFK
Sbjct: 61  FLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFK 120

Query: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTI 180
           GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGS I
Sbjct: 121 GAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSII 180

Query: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 NGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Cmc03g0062021 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-75
Identity = 158/224 (70.54%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 3   LLNASL--CCSTPKIHSRSHLLLPPSIS---PGPHSTSQVFNQQLEA-TRNLVLSLGQP- 62
           L N SL  CC+   I  +  L  P S S   P   S SQ   + + +  R++V SLG+  
Sbjct: 4   LSNVSLFSCCN---ISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 63  ---TFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 122
              +    +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 123 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFR 182
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NLTNANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 183 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 217
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Cmc03g0062021 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-54
Identity = 126/187 (67.38%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 3   LLNASL--CCSTPKIHSRSHLLLPPSIS---PGPHSTSQVFNQQLEA-TRNLVLSLGQP- 62
           L N SL  CC+   I  +  L  P S S   P   S SQ   + + +  R++V SLG+  
Sbjct: 4   LSNVSLFSCCN---ISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 63  ---TFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 122
              +    +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 123 ANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFR 180
           ANFKGAKLLGASFFDADLTGADLS+ADLRGADFSLANVTK NLTNANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

[Close]

BLAST of Cmc03g0062021 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-11
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 78  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGAD 137
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 138 LSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 197
            S ADL         + +ANLTNA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 198 CKVADGVNPTTGNATRETLLC 216
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Cmc03g0062021 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-11
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 78  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGAD 137
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 27  GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 86

Query: 138 LSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 197
            S ADL         + +ANLTNA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 87  FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 146

Query: 198 CKVADGVNPTTGNATRETLLC 216
           CK A G NP TG  TR++L C
Sbjct: 147 CKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of Cmc03g0062021 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-08
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 86  RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 145
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 146 SLANVTKANLTNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 193
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of Cmc03g0062021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441390.1	2.1e-114	100.00	PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA...	[more]
XP_004138481.2	1.2e-106	95.37	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 ...	[more]
XP_022133545.1	1.1e-94	85.91	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charanti...	[more]
XP_038883977.1	2.1e-93	82.70	thylakoid lumenal 15 kDa protein 1, chloroplastic [Benincasa hispida]	[more]
XP_022955559.1	4.6e-93	85.45	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]

BLAST of Cmc03g0062021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	6.5e-74	70.54	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	8.9e-15	44.44	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	6.6e-10	34.04	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	3.1e-07	37.84	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	4.4e-06	36.21	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of Cmc03g0062021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TDC5	1.0e-114	100.00	Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B3C6	1.0e-114	100.00	thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KA71	6.0e-107	95.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1	[more]
A0A6J1BVJ8	5.3e-95	85.91	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]
A0A6J1GWM1	2.2e-93	85.45	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]

BLAST of Cmc03g0062021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	4.6e-75	70.54	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	1.5e-54	67.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	4.7e-11	34.04	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	4.7e-11	34.04	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	2.2e-08	37.84	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 108..146 e-value: 1.2E-12 score: 47.2
None	No IPR available	GENE3D	2.160.20.80		coord: 73..216 e-value: 4.6E-47 score: 160.8
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 85..187
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 13..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0062021.1	Cmc03g0062021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009534	chloroplast thylakoid