Cmc03g0061741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0061741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	sister chromatid cohesion 1 protein 2 isoform X1
Location	CMiso1.1chr03: 1915195 .. 1917353 (+)
RNA-Seq Expression	Cmc03g0061741
Synteny	Cmc03g0061741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTTAAGCGAAGCATATACGATGCTAGGGACTTGGTTTCAAAAAGAAGAAAATGTCCTTGTAGTGCTCTCACTGCCTGGAAGGCTAGTCAAATATCTAGACTCTCCTTTGGCTTCTCAATGCCTTTGATGTCCTGTAAGTTTATGAGGTTCTTGTCTTCTTGATTGGGTTTTTGAAAGTCATGTTTAATCTTGAAAAGAAAAAAGCATTGAATTTTAAGTTTCAAGGACACTATTTTGTCTTATGATGATAGTTTTCTCTACAAGGTGTTTCGCCTGAGCTTAGGTCCCTTTTTGAAACCAGAGTGAATATATCAAAATCTACTGAACTGGTGAAATCTCCTGAAAACTTGGATGTTCCAAGTTCTCCAGCTTTTCACACATTAGTGAAAATGGATAGCCCCGTAACAATTTTCAAAACTGGAGAACATTCAAATGAACCAGAGATTTCTGGATCTATAGCTACCTACAGATCAGAGCAAATCACGACTTGTGTGGATAGAGTTGCCGTTTCTGAAGCTTCTGTCCTGGAGTTGTCCACATCAGAACCTCAAATTTCAGATGGACTCGAGCAAATAGCAATAGCACCTGGCACACCTGTTCGGTGCTCAACATCAGCTAGATTATTTAGGAGTCCAGATAGCCCTAAAGTTTCTAACTCGAATGCAGTAAGGCTTGTTGTGATCTTTTAGGAATTGTATACCAAACAATTTTTTTTGTCAACCCTAGGTATTCAAATTTTCATTTGTGTCTTGAACGAGTGAATATTATTTATCCTTGTAGGTTGGTATTTACTTGAAGCTGAAGTATAAGCATTTTTTTACAGTTTTTAGATTAGATGTTTGTCAATATATTGTTTGACGGTTCCCAATTTCCCTCTTTGTCCAGCAGATAAAGTTTTGTGAAGTGGATGAACTGGAAACCGGTAAGGAGCATCTTCAAGCGATTTTATTATGCTATTTAGGAATCTCTTTATAGGTTGTATGTTTAATTACTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGATAAATATAGATGGATGGTCTGGGAGAACCAGGTAAAGTGTATTGATTTGGGTTCACGTTTCTCAGCTGTTCTTCATTTCATTCCCACTTGCTTTTAACTCGTTAAACCTCTGATGCTACAGAATGGTTGCTGAATATCTTCTCCAAAATTTTACAAATCAACGGATACAGAGTGCGGAAGAGGCTGTAAATTTGTCCCATCTTCTAAGCAACAAAACGAGAAAAGAGAGTGCTGGTTTATTCTACGAAATATTGGTATTTTTCTTCTTCTTCTTTCCCTATTGTCTCCTTGTTTCAATCCTTTGAACTCTATGTCTGGTGCTTCATTTTTCCTCTTGTGGTTTGGTTGATAGTACATCTTGAATTTTAGATATATAGGTGACAAGGAAACTTGAAGCACTTTAGACAGATGGGCGTTGTTACAGAATTTTATAGAAAAAGTTAACGCTCTCTCATCTGTACTGAATATTTTAATTTAACGAAAAGTTCCAACTTCACAATCAGCAATTGAAGAAAATTGAAACCCCAAGCCTAACAACAATCACCTCTTGACCTATCATTCTGTAGTTTTTTCTTTTTAAAAAAAACAGAAACATGTTGCTTAAAGTAAACCATTACAATCTTTGGTGTGAAGGGATGACATTCGAGCATGGTGTTGCAGGTATTGAAAACCAAAGACTGTGTGGATGTGAAACAAGATTGTGCCTACGGTGACATCTTAGTATGGAAACTATCAAACTGGAGCACAGCCTTTGGATCTGGTTTGTCTATCATGGGCGAAGACTAGGTGTAGACTTGTAGAATAGAAATGGAATTAGTTTAGTTGTTTTTGTGTTCAATGTCTACAAAATCAGAGGTTAATGTTGATGTACAGTAACGCTATTAAGTTAAACTGTACGTGTCGGTGTTAAAAGCGGGGATAATTTTGATGTACATCAACTTCCTTGAGTTAACAGTCTATGTAGGAGTAGTTTTGATGCATAGACCGATGGTGGCTGTTATAGTGAACCTCTGACTTGTTATAATCTTTTCTTCTAGAGGTAGATGTTGTAAACTCAAATTATATGTTTCTGGATTTTGTAATCCAAAAACATTGCAAATTTTGAAATGCTTTCATTA

mRNA sequence

GGAACTTAAGCGAAGCATATACGATGCTAGGGACTTGGTTTCAAAAAGAAGAAAATGTCCTTGTAGTGCTCTCACTGCCTGGAAGGCTAGTCAAATATCTAGACTCTCCTTTGGCTTCTCAATGCCTTTGATGTCCTGTGTTTCGCCTGAGCTTAGGTCCCTTTTTGAAACCAGAGTGAATATATCAAAATCTACTGAACTGGTGAAATCTCCTGAAAACTTGGATGTTCCAAGTTCTCCAGCTTTTCACACATTAGTGAAAATGGATAGCCCCGTAACAATTTTCAAAACTGGAGAACATTCAAATGAACCAGAGATTTCTGGATCTATAGCTACCTACAGATCAGAGCAAATCACGACTTGTGTGGATAGAGTTGCCGTTTCTGAAGCTTCTGTCCTGGAGTTGTCCACATCAGAACCTCAAATTTCAGATGGACTCGAGCAAATAGCAATAGCACCTGGCACACCTGTTCGGTGCTCAACATCAGCTAGATTATTTAGGAGTCCAGATAGCCCTAAAGTTTCTAACTCGAATGCAATAAAGTTTTGTGAAGTGGATGAACTGGAAACCGATGGATGGTCTGGGAGAACCAGAATGGTTGCTGAATATCTTCTCCAAAATTTTACAAATCAACGGATACAGAGTGCGGAAGAGGCTGTAAATTTGTCCCATCTTCTAAGCAACAAAACGAGAAAAGAGAGTGCTGGTTTATTCTACGAAATATTGGTATTGAAAACCAAAGACTGTGTGGATGTGAAACAAGATTGTGCCTACGGTGACATCTTAGTATGGAAACTATCAAACTGGAGCACAGCCTTTGGATCTGGTTTGTCTATCATGGGCGAAGACTAGGTGTAGACTTGTAGAATAGAAATGGAATTAGTTTAGTTGTTTTTGTGTTCAATGTCTACAAAATCAGAGGTTAATGTTGATGTACAGTAACGCTATTAAGTTAAACTGTACGTGTCGGTGTTAAAAGCGGGGATAATTTTGATGTACATCAACTTCCTTGAGTTAACAGTCTATGTAGGAGTAGTTTTGATGCATAGACCGATGGTGGCTGTTATAGTGAACCTCTGACTTGTTATAATCTTTTCTTCTAGAGGTAGATGTTGTAAACTCAAATTATATGTTTCTGGATTTTGTAATCCAAAAACATTGCAAATTTTGAAATGCTTTCATTA

Coding sequence (CDS)

ATGCCTTTGATGTCCTGTGTTTCGCCTGAGCTTAGGTCCCTTTTTGAAACCAGAGTGAATATATCAAAATCTACTGAACTGGTGAAATCTCCTGAAAACTTGGATGTTCCAAGTTCTCCAGCTTTTCACACATTAGTGAAAATGGATAGCCCCGTAACAATTTTCAAAACTGGAGAACATTCAAATGAACCAGAGATTTCTGGATCTATAGCTACCTACAGATCAGAGCAAATCACGACTTGTGTGGATAGAGTTGCCGTTTCTGAAGCTTCTGTCCTGGAGTTGTCCACATCAGAACCTCAAATTTCAGATGGACTCGAGCAAATAGCAATAGCACCTGGCACACCTGTTCGGTGCTCAACATCAGCTAGATTATTTAGGAGTCCAGATAGCCCTAAAGTTTCTAACTCGAATGCAATAAAGTTTTGTGAAGTGGATGAACTGGAAACCGATGGATGGTCTGGGAGAACCAGAATGGTTGCTGAATATCTTCTCCAAAATTTTACAAATCAACGGATACAGAGTGCGGAAGAGGCTGTAAATTTGTCCCATCTTCTAAGCAACAAAACGAGAAAAGAGAGTGCTGGTTTATTCTACGAAATATTGGTATTGAAAACCAAAGACTGTGTGGATGTGAAACAAGATTGTGCCTACGGTGACATCTTAGTATGGAAACTATCAAACTGGAGCACAGCCTTTGGATCTGGTTTGTCTATCATGGGCGAAGACTAG

Protein sequence

MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEHSNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCSTSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAVNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIMGED

Homology

[Close]

BLAST of Cmc03g0061741 vs. NCBI nr
Match: XP_008441366.1 (PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 471.1 bits (1211), Expect = 5.8e-129
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 485 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 544

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 545 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 604

Query: 121 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 180
           TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV
Sbjct: 605 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 664

Query: 181 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 240
           NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM
Sbjct: 665 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 724

Query: 241 GED 244
            ED
Sbjct: 725 CED 727

[Close]

BLAST of Cmc03g0061741 vs. NCBI nr
Match: KAA0056598.1 (sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 471.1 bits (1211), Expect = 5.8e-129
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 451 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 510

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 511 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 570

Query: 121 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 180
           TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV
Sbjct: 571 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 630

Query: 181 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 240
           NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM
Sbjct: 631 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 690

Query: 241 GED 244
            ED
Sbjct: 691 CED 693

[Close]

BLAST of Cmc03g0061741 vs. NCBI nr
Match: XP_016899384.1 (PREDICTED: sister chromatid cohesion 1 protein 2 isoform X3 [Cucumis melo])

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127
Identity = 241/244 (98.77%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 429 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 488

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 489 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 548

Query: 121 TSARLFRSPDSPKVSNSNA-IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           TSARLFRSPDSPKVSNSNA IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA
Sbjct: 549 TSARLFRSPDSPKVSNSNAQIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 608

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI
Sbjct: 609 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 668

Query: 241 MGED 244
           M ED
Sbjct: 669 MCED 672

[Close]

BLAST of Cmc03g0061741 vs. NCBI nr
Match: XP_008441365.1 (PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127
Identity = 241/244 (98.77%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 485 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 544

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 545 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 604

Query: 121 TSARLFRSPDSPKVSNSNA-IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           TSARLFRSPDSPKVSNSNA IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA
Sbjct: 605 TSARLFRSPDSPKVSNSNAQIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 664

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI
Sbjct: 665 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 724

Query: 241 MGED 244
           M ED
Sbjct: 725 MCED 728

[Close]

BLAST of Cmc03g0061741 vs. NCBI nr
Match: XP_011656378.1 (sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis sativus] >KGN45720.1 hypothetical protein Csa_005630 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 2.2e-115
Identity = 222/244 (90.98%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSL  T VNISKSTE +KSPENLDVPSS AFHTLVK DSPVT F+TGEH
Sbjct: 485 MPLMSCVSPELRSLSVTGVNISKSTEPMKSPENLDVPSSSAFHTLVKRDSPVTNFETGEH 544

Query: 61  SNEPEISGSI-ATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRC 120
           SNE +ISGSI ATYRSEQITTCVDRVAVSEASV ELSTSEPQISDGLEQIAIAPGTPVRC
Sbjct: 545 SNEADISGSIAATYRSEQITTCVDRVAVSEASVPELSTSEPQISDGLEQIAIAPGTPVRC 604

Query: 121 STSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           STSARLFRSPDSPKV N NAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQS +EA
Sbjct: 605 STSARLFRSPDSPKVPNLNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSVKEA 664

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTK+CVDVKQDCAYGDILVWKL +W TAFGSGLSI
Sbjct: 665 VNLSHLLSNKTRKESAGLFYEILVLKTKNCVDVKQDCAYGDILVWKLPSWGTAFGSGLSI 724

Query: 241 MGED 244
           M ED
Sbjct: 725 MCED 728

[Close]

BLAST of Cmc03g0061741 vs. ExPASy Swiss-Prot
Match: Q9FQ20 (Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana OX=3702 GN=SYN2 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 6.3e-17
Identity = 64/172 (37.21%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 85  VAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCSTSARLFRSP--------------- 144
           V  SE +V+   T  P +S   EQ+ IAP TPVR S S R F+ P               
Sbjct: 638 VRTSEQTVIAPET--PVVS---EQVEIAPETPVRESMSKRFFKDPGTCYKKSRPASPFTS 697

Query: 145 --DSPKV------------SNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQS 204
             + P V             N   +   E  +L+ + WS RTR VA++L + F  QR + 
Sbjct: 698 FEEHPSVYYVENRDLDTILMNDEQVNADERQDLQQETWSSRTRNVAKFLEKTFLEQRERE 757

Query: 205 AEEAVNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLS 228
            EE V+L  L   +T+KESA LFYE LVLKTK  V+VKQ+  Y D+ + ++S
Sbjct: 758 EEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVS 804

[Close]

BLAST of Cmc03g0061741 vs. ExPASy Swiss-Prot
Match: Q8W1Y0 (Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 148  LETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAVNLSHLLSNKTRKESAGLFYEILVLKTK 207
            LE  GWS RTR VA+Y LQ   ++  ++ +  +    LL+ KTRKE++ +F+E LVLKT+
Sbjct: 946  LENSGWSSRTRAVAKY-LQTLFDKETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTR 1005

Query: 208  DCVDVKQDCAYGDILV 224
            D + V+Q   Y  I++
Sbjct: 1006 DYIQVEQGKPYESIII 1020

[Close]

BLAST of Cmc03g0061741 vs. ExPASy Swiss-Prot
Match: Q9FQ19 (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-07
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 154 SGRTRMVAEYLLQNFTNQRIQSAEEA--VNLSHLLSNKTRKESAGLFYEILVLKTKDCVD 213
           +GR R +A+YL Q  ++    S+  +  ++LS +L+ KTRK +A +F+E LVLK++  +D
Sbjct: 610 TGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLID 669

Query: 214 VKQDCAYGDI 222
           ++QD  YGDI
Sbjct: 670 MQQDRPYGDI 679

[Close]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL
Match: A0A5A7UND2 (Sister chromatid cohesion 1 protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001110 PE=3 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.8e-129
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 451 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 510

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 511 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 570

Query: 121 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 180
           TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV
Sbjct: 571 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 630

Query: 181 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 240
           NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM
Sbjct: 631 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 690

Query: 241 GED 244
            ED
Sbjct: 691 CED 693

[Close]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL
Match: A0A1S3B3X4 (sister chromatid cohesion 1 protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485500 PE=3 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.8e-129
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 485 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 544

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 545 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 604

Query: 121 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 180
           TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV
Sbjct: 605 TSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAV 664

Query: 181 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 240
           NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM
Sbjct: 665 NLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSIM 724

Query: 241 GED 244
            ED
Sbjct: 725 CED 727

[Close]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL
Match: A0A1S3B388 (sister chromatid cohesion 1 protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485500 PE=3 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.0e-128
Identity = 241/244 (98.77%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 485 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 544

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 545 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 604

Query: 121 TSARLFRSPDSPKVSNSNA-IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           TSARLFRSPDSPKVSNSNA IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA
Sbjct: 605 TSARLFRSPDSPKVSNSNAQIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 664

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI
Sbjct: 665 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 724

Query: 241 MGED 244
           M ED
Sbjct: 725 MCED 728

[Close]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL
Match: A0A1S4DTR9 (sister chromatid cohesion 1 protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485500 PE=3 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.0e-128
Identity = 241/244 (98.77%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSLFET VNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH
Sbjct: 429 MPLMSCVSPELRSLFETIVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 488

Query: 61  SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 120
           SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS
Sbjct: 489 SNEPEISGSIATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCS 548

Query: 121 TSARLFRSPDSPKVSNSNA-IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           TSARLFRSPDSPKVSNSNA IKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA
Sbjct: 549 TSARLFRSPDSPKVSNSNAQIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 608

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI
Sbjct: 609 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 668

Query: 241 MGED 244
           M ED
Sbjct: 669 MCED 672

[Close]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL
Match: A0A0A0K7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008030 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.0e-115
Identity = 222/244 (90.98%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MPLMSCVSPELRSLFETRVNISKSTELVKSPENLDVPSSPAFHTLVKMDSPVTIFKTGEH 60
           MPLMSCVSPELRSL  T VNISKSTE +KSPENLDVPSS AFHTLVK DSPVT F+TGEH
Sbjct: 485 MPLMSCVSPELRSLSVTGVNISKSTEPMKSPENLDVPSSSAFHTLVKRDSPVTNFETGEH 544

Query: 61  SNEPEISGSI-ATYRSEQITTCVDRVAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRC 120
           SNE +ISGSI ATYRSEQITTCVDRVAVSEASV ELSTSEPQISDGLEQIAIAPGTPVRC
Sbjct: 545 SNEADISGSIAATYRSEQITTCVDRVAVSEASVPELSTSEPQISDGLEQIAIAPGTPVRC 604

Query: 121 STSARLFRSPDSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSAEEA 180
           STSARLFRSPDSPKV N NAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQS +EA
Sbjct: 605 STSARLFRSPDSPKVPNLNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSVKEA 664

Query: 181 VNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLSNWSTAFGSGLSI 240
           VNLSHLLSNKTRKESAGLFYEILVLKTK+CVDVKQDCAYGDILVWKL +W TAFGSGLSI
Sbjct: 665 VNLSHLLSNKTRKESAGLFYEILVLKTKNCVDVKQDCAYGDILVWKLPSWGTAFGSGLSI 724

Query: 241 MGED 244
           M ED
Sbjct: 725 MCED 728

[Close]

BLAST of Cmc03g0061741 vs. TAIR 10
Match: AT5G40840.2 (Rad21/Rec8-like family protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-18
Identity = 64/172 (37.21%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 85  VAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCSTSARLFRSP--------------- 144
           V  SE +V+   T  P +S   EQ+ IAP TPVR S S R F+ P               
Sbjct: 638 VRTSEQTVIAPET--PVVS---EQVEIAPETPVRESMSKRFFKDPGTCYKKSRPASPFTS 697

Query: 145 --DSPKV------------SNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQS 204
             + P V             N   +   E  +L+ + WS RTR VA++L + F  QR + 
Sbjct: 698 FEEHPSVYYVENRDLDTILMNDEQVNADERQDLQQETWSSRTRNVAKFLEKTFLEQRERE 757

Query: 205 AEEAVNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLS 228
            EE V+L  L   +T+KESA LFYE LVLKTK  V+VKQ+  Y D+ + ++S
Sbjct: 758 EEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVS 804

[Close]

BLAST of Cmc03g0061741 vs. TAIR 10
Match: AT5G40840.3 (Rad21/Rec8-like family protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-18
Identity = 64/172 (37.21%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 85  VAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCSTSARLFRSP--------------- 144
           V  SE +V+   T  P +S   EQ+ IAP TPVR S S R F+ P               
Sbjct: 506 VRTSEQTVIAPET--PVVS---EQVEIAPETPVRESMSKRFFKDPGTCYKKSRPASPFTS 565

Query: 145 --DSPKV------------SNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQS 204
             + P V             N   +   E  +L+ + WS RTR VA++L + F  QR + 
Sbjct: 566 FEEHPSVYYVENRDLDTILMNDEQVNADERQDLQQETWSSRTRNVAKFLEKTFLEQRERE 625

Query: 205 AEEAVNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLS 228
            EE V+L  L   +T+KESA LFYE LVLKTK  V+VKQ+  Y D+ + ++S
Sbjct: 626 EEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVS 672

[Close]

BLAST of Cmc03g0061741 vs. TAIR 10
Match: AT5G40840.1 (Rad21/Rec8-like family protein )

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-18
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 85  VAVSEASVLELSTSEPQISDGLEQIAIAPGTPVRCSTSARLFRSP--------------- 144
           V  SE +V+   T  P +S   EQ+ IAP TPVR S S R F+ P               
Sbjct: 638 VRTSEQTVIAPET--PVVS---EQVEIAPETPVRESMSKRFFKDPGTCYKKSRPASPFTS 697

Query: 145 -------------DSPKVSNSNAIKFCEVDELETDGWSGRTRMVAEYLLQNFTNQRIQSA 204
                        D   +  ++ +   E  +L+ + WS RTR VA++L + F  QR +  
Sbjct: 698 FEEHPSVYYVENRDLDTILMNDEVNADERQDLQQETWSSRTRNVAKFLEKTFLEQREREE 757

Query: 205 EEAVNLSHLLSNKTRKESAGLFYEILVLKTKDCVDVKQDCAYGDILVWKLS 228
           EE V+L  L   +T+KESA LFYE LVLKTK  V+VKQ+  Y D+ + ++S
Sbjct: 758 EEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVS 803

[Close]

BLAST of Cmc03g0061741 vs. TAIR 10
Match: AT5G16270.1 (sister chromatid cohesion 1 protein 4 )

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 148  LETDGWSGRTRMVAEYLLQNFTNQRIQSAEEAVNLSHLLSNKTRKESAGLFYEILVLKTK 207
            LE  GWS RTR VA+Y LQ   ++  ++ +  +    LL+ KTRKE++ +F+E LVLKT+
Sbjct: 946  LENSGWSSRTRAVAKY-LQTLFDKETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTR 1005

Query: 208  DCVDVKQDCAYGDILV 224
            D + V+Q   Y  I++
Sbjct: 1006 DYIQVEQGKPYESIII 1020

[Close]

BLAST of Cmc03g0061741 vs. TAIR 10
Match: AT3G59550.1 (Rad21/Rec8-like family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-08
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 154 SGRTRMVAEYLLQNFTNQRIQSAEEA--VNLSHLLSNKTRKESAGLFYEILVLKTKDCVD 213
           +GR R +A+YL Q  ++    S+  +  ++LS +L+ KTRK +A +F+E LVLK++  +D
Sbjct: 610 TGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLID 669

Query: 214 VKQDCAYGDI 222
           ++QD  YGDI
Sbjct: 670 MQQDRPYGDI 679

The following BLAST results are available for this feature:

BLAST of Cmc03g0061741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441366.1	5.8e-129	99.18	PREDICTED: sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis melo]	[more]
KAA0056598.1	5.8e-129	99.18	sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016899384.1	1.4e-127	98.77	PREDICTED: sister chromatid cohesion 1 protein 2 isoform X3 [Cucumis melo]	[more]
XP_008441365.1	1.4e-127	98.77	PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Cucumis melo]	[more]
XP_011656378.1	2.2e-115	90.98	sister chromatid cohesion 1 protein 2 isoform X2 [Cucumis sativus] >KGN45720.1 h...	[more]

BLAST of Cmc03g0061741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FQ20	6.3e-17	37.21	Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana OX=3702 GN=SYN2 PE...	[more]
Q8W1Y0	2.2e-09	42.11	Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE...	[more]
Q9FQ19	3.4e-07	41.43	Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE...	[more]

BLAST of Cmc03g0061741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UND2	2.8e-129	99.18	Sister chromatid cohesion 1 protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3B3X4	2.8e-129	99.18	sister chromatid cohesion 1 protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3B388	7.0e-128	98.77	sister chromatid cohesion 1 protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DTR9	7.0e-128	98.77	sister chromatid cohesion 1 protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0K7K5	1.0e-115	90.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008030 PE=3 SV=1	[more]

BLAST of Cmc03g0061741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40840.2	4.5e-18	37.21	Rad21/Rec8-like family protein	[more]
AT5G40840.3	4.5e-18	37.21	Rad21/Rec8-like family protein	[more]
AT5G40840.1	7.6e-18	36.26	Rad21/Rec8-like family protein	[more]
AT5G16270.1	1.5e-10	42.11	sister chromatid cohesion 1 protein 4	[more]
AT3G59550.1	2.4e-08	41.43	Rad21/Rec8-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023093	ScpA-like, C-terminal	GENE3D	1.10.10.580	Structural maintenance of chromosome 1. Chain E	coord: 156..233 e-value: 7.4E-15 score: 56.5
IPR006909	Rad21/Rec8-like protein, C-terminal, eukaryotic	PFAM	PF04824	Rad21_Rec8	coord: 177..223 e-value: 1.1E-16 score: 59.8
None	No IPR available	PANTHER	PTHR12585:SF49	SISTER CHROMATID COHESION 1 PROTEIN 2	coord: 2..234
IPR039781	Rad21/Rec8-like protein	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 2..234
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 156..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0061741.1	Cmc03g0061741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1990414	replication-born double-strand break repair via sister chromatid exchange
biological_process	GO:0007062	sister chromatid cohesion
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding