Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTTCAATGTGCCATTGAAAACTACAAATGGTTCTTGTGTGCTTCTTGTTCTATTCATGGGGATAGGTCAATATGGGTTCTTACTAGGTTTGATTCAGAACATACTTGTTCAATAGATGTTCCATTAATGGATCATAGACAAGCCACATTTATTGTTATCAAGGACCTAATTAAGAACAAATTTTTTTTAACTGGTTCTCAATTGTCAACTCTCAAAGATATAGTTCATTTCATTCGTGTTGAACATGGTTTAAGTATATCTTACCAAAAAGCATGGCGTGCTCGTGAGGCTGCGTTAGATGATATTCGCGGATCTTCTGAGGACTTCTACAAGATGTTACGCAGATTTGCATACATATTAGAACTCAACAACCCAGGTATATTAACAATATACTTAAGTATATTGTTATACATTTTTTCTTATATGTTCTTTTTTTTATGTTTATAGGTTTTGTTATTGAATACAAAGTTGATGTCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGTTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACTAGTATGAGAATAAGTACGGTGGTACTTTGTTATCTGCTTCAACACCTGATAAAAGAATTATAG
mRNA sequence
ATGATTTTTCAATGTGCCATTGAAAACTACAAATGGTTCTTGTGTGCTTCTTGTTCTATTCATGGGGATAGGTCAATATGGGTTCTTACTAGGTTTGATTCAGAACATACTTGTTCAATAGATGTTCCATTAATGGATCATAGACAAGCCACATTTATTGTTATCAAGGACCTAATTAAGAACAAATTTTTTTTAACTGGTTCTCAATTGTCAACTCTCAAAGATATAGTTCATTTCATTCGTGTTGAACATGGTTTAAGTATATCTTACCAAAAAGCATGGCGTGCTCGTGAGGCTGCGTTAGATGATATTCGCGGATCTTCTGAGGACTTCTACAAGATGTTACGCAGATTTGCATACATATTAGAACTCAACAACCCAGGTTTTGTTATTGAATACAAAGTTGATGTCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGTTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACTAGTATGAGAATAAGTACGGTGGTACTTTGTTATCTGCTTCAACACCTGATAAAAGAATTATAG
Coding sequence (CDS)
ATGATTTTTCAATGTGCCATTGAAAACTACAAATGGTTCTTGTGTGCTTCTTGTTCTATTCATGGGGATAGGTCAATATGGGTTCTTACTAGGTTTGATTCAGAACATACTTGTTCAATAGATGTTCCATTAATGGATCATAGACAAGCCACATTTATTGTTATCAAGGACCTAATTAAGAACAAATTTTTTTTAACTGGTTCTCAATTGTCAACTCTCAAAGATATAGTTCATTTCATTCGTGTTGAACATGGTTTAAGTATATCTTACCAAAAAGCATGGCGTGCTCGTGAGGCTGCGTTAGATGATATTCGCGGATCTTCTGAGGACTTCTACAAGATGTTACGCAGATTTGCATACATATTAGAACTCAACAACCCAGGTTTTGTTATTGAATACAAAGTTGATGTCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGTTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTCTATTGATGGAACTAGTATGAGAATAAGTACGGTGGTACTTTGTTATCTGCTTCAACACCTGATAAAAGAATTATAG
Protein sequence
MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIKNKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAYILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMRISTVVLCYLLQHLIKEL
Homology
BLAST of Cmc03g0060871 vs. NCBI nr
Match:
KAA0060121.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 287.3 bits (734), Expect = 9.2e-74
Identity = 138/177 (77.97%), Postives = 149/177 (84.18%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L ASC IHGDRS+WVLTRFDSEHTC +DVPL D+RQATF V KDLIK
Sbjct: 47 MILQCAIENCKWSLRASCCIHGDRSLWVLTRFDSEHTCLVDVPLSDYRQATFTVTKDLIK 106
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK L G +LST KDIVHFIR EHGLSISYQKAWRA E ALDDIRGS +D YKML RFAY
Sbjct: 107 NKISLAGFELSTSKDIVHFIRAEHGLSISYQKAWRAHETALDDIRGSPDDSYKMLPRFAY 166
Query: 121 ILELNNP-------GFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNP G+V+EYKVDVDGRFLYFF+ALS SISGWQHCRP+ISIDGTS++
Sbjct: 167 ILELNNPGIFAIYIGYVVEYKVDVDGRFLYFFMALSASISGWQHCRPIISIDGTSLK 223
BLAST of Cmc03g0060871 vs. NCBI nr
Match:
KAA0058851.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYK23770.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 137/170 (80.59%), Postives = 145/170 (85.29%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L +SC IH DR +WVLTRFDSEHTCSIDVPL DHR ATF VIKDLIK
Sbjct: 1 MILQCAIENCKWSLRSSCCIHADRLLWVLTRFDSEHTCSIDVPLTDHRLATFTVIKDLIK 60
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK LTGS+LST KDIVHFIR EH LSISYQKAWRARE ALDD GS E+ YKML RFAY
Sbjct: 61 NKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDNHGSPEESYKMLPRFAY 120
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNPG V+EYKVDVDGRFLYFF+ LSVSISGWQH PVISIDGTS++
Sbjct: 121 ILELNNPGSVVEYKVDVDGRFLYFFMTLSVSISGWQHYHPVISIDGTSLK 170
BLAST of Cmc03g0060871 vs. NCBI nr
Match:
XP_008441658.1 (PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo])
HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72
Identity = 137/170 (80.59%), Postives = 145/170 (85.29%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L +SC IH DR +WVLTRFDSEHTCSIDVPL DHR ATF VIKDLIK
Sbjct: 8 MILQCAIENCKWSLRSSCCIHADRLLWVLTRFDSEHTCSIDVPLTDHRLATFTVIKDLIK 67
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK LTGS+LST KDIVHFIR EH LSISYQKAWRARE ALDD GS E+ YKML RFAY
Sbjct: 68 NKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDNHGSPEESYKMLPRFAY 127
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNPG V+EYKVDVDGRFLYFF+ LSVSISGWQH PVISIDGTS++
Sbjct: 128 ILELNNPGSVVEYKVDVDGRFLYFFMTLSVSISGWQHYHPVISIDGTSLK 177
BLAST of Cmc03g0060871 vs. NCBI nr
Match:
KAA0051302.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 276.6 bits (706), Expect = 1.6e-70
Identity = 134/170 (78.82%), Postives = 144/170 (84.71%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAI+NYKW L ASCSIH DRSIWV+TRFD EHTCS+DVPL DHRQATF VIKDLIK
Sbjct: 33 MILQCAIKNYKWSLRASCSIHWDRSIWVVTRFDLEHTCSVDVPLTDHRQATFTVIKDLIK 92
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK L GS+LST KDIVHFIR +HGLS SYQKAWRA EA LDDIRGS ED YKML RF Y
Sbjct: 93 NKISLAGSELSTSKDIVHFIRAKHGLSKSYQKAWRAPEATLDDIRGSHEDSYKMLSRFVY 152
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNN G VIEYKVD DGRFLYFF+AL SI+GW+H R VISIDGTS++
Sbjct: 153 ILELNNLGSVIEYKVDADGRFLYFFMALFASITGWKHYRLVISIDGTSLK 202
BLAST of Cmc03g0060871 vs. NCBI nr
Match:
KAA0039149.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 268.1 bits (684), Expect = 5.8e-68
Identity = 133/170 (78.24%), Postives = 142/170 (83.53%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L ASC IHGDRS+WVLTRFD EHT S+DVPL DHRQATF VIKDLIK
Sbjct: 47 MILQCAIENCKWSLRASCCIHGDRSLWVLTRFDFEHTYSVDVPLTDHRQATFNVIKDLIK 106
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK L GS+LST K+IVHFI EHGLSISYQKAWRA + ALDDIRGS ED YKML RFAY
Sbjct: 107 NKISLAGSKLSTPKNIVHFICDEHGLSISYQKAWRACKVALDDIRGSLEDSYKMLPRFAY 166
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNN G V+EYKVD D RFLYFF+ALS SISGWQHC VI IDGTS++
Sbjct: 167 ILELNNLGSVVEYKVDADDRFLYFFMALSASISGWQHCCLVIFIDGTSLK 216
BLAST of Cmc03g0060871 vs. ExPASy TrEMBL
Match:
A0A5A7V2Y2 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00410 PE=4 SV=1)
HSP 1 Score: 287.3 bits (734), Expect = 4.5e-74
Identity = 138/177 (77.97%), Postives = 149/177 (84.18%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L ASC IHGDRS+WVLTRFDSEHTC +DVPL D+RQATF V KDLIK
Sbjct: 47 MILQCAIENCKWSLRASCCIHGDRSLWVLTRFDSEHTCLVDVPLSDYRQATFTVTKDLIK 106
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK L G +LST KDIVHFIR EHGLSISYQKAWRA E ALDDIRGS +D YKML RFAY
Sbjct: 107 NKISLAGFELSTSKDIVHFIRAEHGLSISYQKAWRAHETALDDIRGSPDDSYKMLPRFAY 166
Query: 121 ILELNNP-------GFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNP G+V+EYKVDVDGRFLYFF+ALS SISGWQHCRP+ISIDGTS++
Sbjct: 167 ILELNNPGIFAIYIGYVVEYKVDVDGRFLYFFMALSASISGWQHCRPIISIDGTSLK 223
BLAST of Cmc03g0060871 vs. ExPASy TrEMBL
Match:
A0A5D3DK39 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00920 PE=4 SV=1)
HSP 1 Score: 283.1 bits (723), Expect = 8.4e-73
Identity = 137/170 (80.59%), Postives = 145/170 (85.29%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L +SC IH DR +WVLTRFDSEHTCSIDVPL DHR ATF VIKDLIK
Sbjct: 1 MILQCAIENCKWSLRSSCCIHADRLLWVLTRFDSEHTCSIDVPLTDHRLATFTVIKDLIK 60
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK LTGS+LST KDIVHFIR EH LSISYQKAWRARE ALDD GS E+ YKML RFAY
Sbjct: 61 NKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDNHGSPEESYKMLPRFAY 120
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNPG V+EYKVDVDGRFLYFF+ LSVSISGWQH PVISIDGTS++
Sbjct: 121 ILELNNPGSVVEYKVDVDGRFLYFFMTLSVSISGWQHYHPVISIDGTSLK 170
BLAST of Cmc03g0060871 vs. ExPASy TrEMBL
Match:
A0A1S3B4K4 (uncharacterized protein LOC103485740 OS=Cucumis melo OX=3656 GN=LOC103485740 PE=4 SV=1)
HSP 1 Score: 283.1 bits (723), Expect = 8.4e-73
Identity = 137/170 (80.59%), Postives = 145/170 (85.29%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAIEN KW L +SC IH DR +WVLTRFDSEHTCSIDVPL DHR ATF VIKDLIK
Sbjct: 8 MILQCAIENCKWSLRSSCCIHADRLLWVLTRFDSEHTCSIDVPLTDHRLATFTVIKDLIK 67
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK LTGS+LST KDIVHFIR EH LSISYQKAWRARE ALDD GS E+ YKML RFAY
Sbjct: 68 NKISLTGSELSTPKDIVHFIRAEHDLSISYQKAWRAREVALDDNHGSPEESYKMLPRFAY 127
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNNPG V+EYKVDVDGRFLYFF+ LSVSISGWQH PVISIDGTS++
Sbjct: 128 ILELNNPGSVVEYKVDVDGRFLYFFMTLSVSISGWQHYHPVISIDGTSLK 177
BLAST of Cmc03g0060871 vs. ExPASy TrEMBL
Match:
A0A5A7U620 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00090 PE=4 SV=1)
HSP 1 Score: 276.6 bits (706), Expect = 7.9e-71
Identity = 134/170 (78.82%), Postives = 144/170 (84.71%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QCAI+NYKW L ASCSIH DRSIWV+TRFD EHTCS+DVPL DHRQATF VIKDLIK
Sbjct: 33 MILQCAIKNYKWSLRASCSIHWDRSIWVVTRFDLEHTCSVDVPLTDHRQATFTVIKDLIK 92
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK L GS+LST KDIVHFIR +HGLS SYQKAWRA EA LDDIRGS ED YKML RF Y
Sbjct: 93 NKISLAGSELSTSKDIVHFIRAKHGLSKSYQKAWRAPEATLDDIRGSHEDSYKMLSRFVY 152
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
ILELNN G VIEYKVD DGRFLYFF+AL SI+GW+H R VISIDGTS++
Sbjct: 153 ILELNNLGSVIEYKVDADGRFLYFFMALFASITGWKHYRLVISIDGTSLK 202
BLAST of Cmc03g0060871 vs. ExPASy TrEMBL
Match:
A0A5D3BGB6 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold703G00120 PE=4 SV=1)
HSP 1 Score: 268.1 bits (684), Expect = 2.8e-68
Identity = 126/170 (74.12%), Postives = 142/170 (83.53%), Query Frame = 0
Query: 1 MIFQCAIENYKWFLCASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 60
MI QC IEN K LCAS IHGDR++WVLTR+DSEHTCS+DVPL DHR ATF VIKDLIK
Sbjct: 47 MILQCTIENCKCSLCASFCIHGDRTLWVLTRYDSEHTCSVDVPLTDHRHATFTVIKDLIK 106
Query: 61 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRGSSEDFYKMLRRFAY 120
NK FL GS+LST KDIV +IR EHGLSI YQ AWRAREAALD+I GS ED YKM+ +F Y
Sbjct: 107 NKIFLAGSELSTPKDIVRYIRAEHGLSIFYQIAWRAREAALDEIHGSPEDSYKMIPQFVY 166
Query: 121 ILELNNPGFVIEYKVDVDGRFLYFFIALSVSISGWQHCRPVISIDGTSMR 171
IL+LN P V+EYKVD DGRFLYFF+ALS +ISGWQHC P+ISIDGTS++
Sbjct: 167 ILKLNKPCSVVEYKVDADGRFLYFFVALSATISGWQHCCPLISIDGTSLK 216
BLAST of Cmc03g0060871 vs. TAIR 10
Match:
AT1G64255.1 (MuDR family transposase )
HSP 1 Score: 45.8 bits (107), Expect = 4.3e-05
Identity = 45/174 (25.86%), Postives = 77/174 (44.25%), Query Frame = 0
Query: 2 IFQCAIENYKWFL-CASCSIHGDRSIWVLTRFDSEHTCSIDVPLMDHRQATFIVIKDLIK 61
IF+C KW L A HG + + ++ HTC VP + ++ F D I+
Sbjct: 230 IFECIRWKCKWSLGAARMKKHG---LVEIIKYTGPHTCHPIVP--EDFKSEFET--DEIE 289
Query: 62 NKFFLTGSQLSTLKDIVHFIRVEHGLSISYQKAWRAREAALDDIRG----SSEDFYKMLR 121
+Q T+ ++ + + + G + A+E A+ + G S EDF K++
Sbjct: 290 RAVRYMPTQ--TISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDFPKLMS 349
Query: 122 RFAYILELNNPGFVIEYKVDV-----DGRFLYFFIALSVSISGWQHCRPVISID 166
++ G ++++K D+ F F A SI G+QHCRP+I +D
Sbjct: 350 ALC-----SSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQHCRPLIVVD 389
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060121.1 | 9.2e-74 | 77.97 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] | [more] |
KAA0058851.1 | 1.7e-72 | 80.59 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] >TYK23770.... | [more] |
XP_008441658.1 | 1.7e-72 | 80.59 | PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo] | [more] |
KAA0051302.1 | 1.6e-70 | 78.82 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] | [more] |
KAA0039149.1 | 5.8e-68 | 78.24 | protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V2Y2 | 4.5e-74 | 77.97 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A5D3DK39 | 8.4e-73 | 80.59 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A1S3B4K4 | 8.4e-73 | 80.59 | uncharacterized protein LOC103485740 OS=Cucumis melo OX=3656 GN=LOC103485740 PE=... | [more] |
A0A5A7U620 | 7.9e-71 | 78.82 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A5D3BGB6 | 2.8e-68 | 74.12 | Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
Match Name | E-value | Identity | Description | |
AT1G64255.1 | 4.3e-05 | 25.86 | MuDR family transposase | [more] |