Cmc03g0060861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0060861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 1150711 .. 1151739 (+)
RNA-Seq Expression	Cmc03g0060861
Synteny	Cmc03g0060861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGTTTTACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTGGACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATCTGCACCAGGTTTTGGAGACTCATCGAGCTAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCTAGTGAGGGAGTTTCTGTGGACTCAGCAAAGATCGAAGCGATTACCAGTTGGCCTCGACCGTCTATAGTTAGCAAAATTTGTAGTTTCTTGAGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTATTTAGAGCCCATCTTGTGAGAGTAGCTTTCAGGAGCTTAAGCAGAAGCTTGTGTCTGCACCAGTTCTTATAGTGCTAGATGGATCTGGAAGTTTTGTGATCTACAGTGATGCCTCCAAGAAAGGATTTGGTTGCGTGTTGATGCAGCAAGGCAGGGTAGTTGCTTATGGCTCCTGTCAGTTGAAGAGTCATGAGCAGAACTATCCTACCCTTGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACACTTCCTGTACGGTGATAAGATACAAATTTTCACTGACCATAAAAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGACAGAGAAGATGGCTTGAATTAGTGAAGGATTATGATTGCGAGATTTTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCACTGAGTAGAAAGGTTGCACATTCAGCAGCGCTTATCACCAAGCAAGCTCCTTTGCTCATGGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGTTGGCTGTTGTCAGGGCAGCCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGA

mRNA sequence

ATGTCCTTTGGTTTTACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTGGACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATCTGCACCAGGTTTTGGAGACTCATCGAGCTAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCTAGTGAGGGAGTTTCTGTGGACTCAGCAAAGATCGAAGCGATTACCAGTTGGCCTCGACCGTCTATAGTTAGCAAAATTTGTAGTTTCTTGAGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCTAGTCCCTTGACTCATGATGCCTCCAAGAAAGGATTTGGTTGCGTGTTGATGCAGCAAGGCAGGGTAGTTGCTTATGGCTCCTGTCAGTTGAAGAGTCATGAGCAGAACTATCCTACCCTTGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACACTTCCTGTACGGTGATAAGATACAAATTTTCACTGACCATAAAAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGACAGAGAAGATGGCTTGAATTAGTGAAGGATTATGATTGCGAGATTTTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCACTGAGTAGAAAGGTTGCACATTCAGCAGCGCTTATCACCAAGCAAGCTCCTTTGCTCATGGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGTTGGCTGTTGTCAGGGCAGCCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGA

Coding sequence (CDS)

ATGTCCTTTGGTTTTACTAATGCTCCTGCGGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTGGACACGTTTGTTATAGTTTTCATTGATGACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGAGCATCTGCACCAGGTTTTGGAGACTCATCGAGCTAATAAGTTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTTCTCGGCCATGTGGTTTCTAGTGAGGGAGTTTCTGTGGACTCAGCAAAGATCGAAGCGATTACCAGTTGGCCTCGACCGTCTATAGTTAGCAAAATTTGTAGTTTCTTGAGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCTAGTCCCTTGACTCATGATGCCTCCAAGAAAGGATTTGGTTGCGTGTTGATGCAGCAAGGCAGGGTAGTTGCTTATGGCTCCTGTCAGTTGAAGAGTCATGAGCAGAACTATCCTACCCTTGACCTAGAGTTGGCAGCAGTAGTTTTTGCACTGAAGATATGGAGACACTTCCTGTACGGTGATAAGATACAAATTTTCACTGACCATAAAAGCCTAAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGACAGAGAAGATGGCTTGAATTAGTGAAGGATTATGATTGCGAGATTTTGTATCACCCAGGTAAGGCAAATGTAGTAGCTGATGCACTGAGTAGAAAGGTTGCACATTCAGCAGCGCTTATCACCAAGCAAGCTCCTTTGCTCATGGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGGGAAGTTACCTCACAGTTGGCTGTTGTCAGGGCAGCCGACCTTGAGGCAGAGGATTATTGTTGCTCAGCTAAATGA

Protein sequence

MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYRRFVEDFSRIASPLTHDASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQAPLLMDFERAEIAVSVGEVTSQLAVVRAADLEAEDYCCSAK

Homology

[Close]

BLAST of Cmc03g0060861 vs. NCBI nr
Match: KAA0066469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 496.5 bits (1277), Expect = 1.6e-136
Identity = 261/342 (76.32%), Postives = 278/342 (81.29%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           +SFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET +ANK
Sbjct: 115 VSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANK 174

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 175 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 234

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 235 RFVEDFSRIASPLTQLTRKRTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 295 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 354

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 299
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 355 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 414

[Close]

BLAST of Cmc03g0060861 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.5 bits (1264), Expect = 5.1e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

[Close]

BLAST of Cmc03g0060861 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.5 bits (1264), Expect = 5.1e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

[Close]

BLAST of Cmc03g0060861 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.5 bits (1264), Expect = 5.1e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1    MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
            MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 685  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61   LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
            LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 745  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121  RFVEDFSRIASPLTH--------------------------------------------D 180
            RFVEDFSRIASPLT                                             D
Sbjct: 805  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTVPDGSGNFVIYSD 864

Query: 181  ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
            ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 865  ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 924

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
            TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 925  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 984

[Close]

BLAST of Cmc03g0060861 vs. NCBI nr
Match: KAA0057168.1 (pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 490.7 bits (1262), Expect = 8.7e-135
Identity = 255/324 (78.70%), Postives = 266/324 (82.10%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL QVLET RAN+
Sbjct: 461 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLRQVLETLRANR 520

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWLKKV+FLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 521 LYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 580

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 581 RFVEDFSRIASPLTQLTRKGTPFVWSPTCQNSFQELKQKLVTAPVLTVPDGSESFVIYSD 640

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+V+AY SCQLKSHEQNYPT DLELA VVFALKIWRH+LYGDK+QIF
Sbjct: 641 ASKKGLGCVLMQQGKVIAYASCQLKSHEQNYPTHDLELAIVVFALKIWRHYLYGDKMQIF 700

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 281
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA+ALSRKVAHSAALITK
Sbjct: 701 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVAEALSRKVAHSAALITK 760

[Close]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-43
Identity = 102/290 (35.17%), Postives = 148/290 (51.03%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           M FG  NAPA F   MN + +  L+   +V++DDI+++S +  EH + L  V E      
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           L  +  KCEF  ++ TFLGHV++ +G+  +  KIEAI  +P P+   +I +FL L GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASP---------------------------------------------LTH 180
           +F+ +F+ IA P                                             LT 
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQI 240
           DAS    G VL Q G  ++Y S  L  HE NY T++ EL A+V+A K +RH+L G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 246
            +DH+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-40
Identity = 97/290 (33.45%), Postives = 143/290 (49.31%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           M FG  NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V        
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           L  +  KCEF  K+  FLGH+V+ +G+  +  K++AI S+P P+   +I +FL L GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASP---------------------------------------------LTH 180
           +F+ +++ IA P                                             LT 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQI 240
           DAS    G VL Q G  +++ S  L  HE NY  ++ EL A+V+A K +RH+L G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR 246
            +DH+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.9e-40
Identity = 98/303 (32.34%), Postives = 148/303 (48.84%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           + FG  NA ++F   ++ V ++ +     V++DD++I+S+ E++H  H+  VL+      
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           +     K  F+ + V +LG +VS +G   D  K++AI  +P P  V K+ SFL LA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASP------------------------------------------------ 180
            F++DF+ IA P                                                
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 --------LTHDASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIW 240
                   LT DAS  G G VL Q+GR +   S  LK  EQNY T + EL A+V+AL   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHFLYGDK-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL 247
           ++FLYG + I IFTDH+ L +    +  N + +RW   +  ++ ++ Y PGK N VADAL
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADAL 608

[Close]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-39
Identity = 91/305 (29.84%), Postives = 155/305 (50.82%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           + FG  NAPA+F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +     
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           L     K  F   +V FLG++V+++G+  D  K+ AI+  P P+ V ++  FL +  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTH--------------------------------------------- 180
           +F++D++++A PLT+                                             
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 ----------DASKKGFGCVLMQ----QGRVVAYGSCQLKSHEQNYPTLDLELAAVVFAL 240
                     DAS    G VL Q    + R +AY S  L   E+NY T++ E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHFLYG-DKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA 246
              R +LYG   I+++TDH+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVA
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVA 549

[Close]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 149.8 bits (377), Expect = 4.8e-35
Identity = 101/295 (34.24%), Postives = 141/295 (47.80%), Query Frame = 0


Query: 1    MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
            M FG  NAP+ F   M   F+D    FV V++DDILI+S++  EH +HL  VLE  +   
Sbjct: 718  MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

Query: 61   LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
            L  K  KC+F  ++  FLG+ +  + ++    K  AI  +P P  V +   FL +  YYR
Sbjct: 778  LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 837

Query: 121  RFVEDFSRIASP------------------------------------------LTHDAS 180
            RF+ + S+IA P                                          LT DAS
Sbjct: 838  RFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDAS 897

Query: 181  KKGFGCVLMQQGR------VVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDK 240
            K G G VL +         VV Y S  L+S ++NYP  +LEL  ++ AL  +R+ L+G  
Sbjct: 898  KDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKH 957

Query: 241  IQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV 248
              + TDH SL     + E   R +RWL+ +  YD  + Y  G  NVVADA+SR V
Sbjct: 958  FTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAV 1010

[Close]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL
Match: A0A5A7VMK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.7e-137
Identity = 261/342 (76.32%), Postives = 278/342 (81.29%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           +SFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET +ANK
Sbjct: 115 VSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANK 174

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 175 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 234

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 235 RFVEDFSRIASPLTQLTRKRTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 294

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 295 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 354

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 299
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 355 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 414

[Close]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.5e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

[Close]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.5e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1    MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
            MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 685  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61   LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
            LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 745  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121  RFVEDFSRIASPLTH--------------------------------------------D 180
            RFVEDFSRIASPLT                                             D
Sbjct: 805  RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVIAPVLTVPDGSGNFVIYSD 864

Query: 181  ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
            ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 865  ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 924

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
            TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 925  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 984

[Close]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.5e-135
Identity = 257/325 (79.08%), Postives = 267/325 (82.15%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHLHQVLET RANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+VVAY S QLK HEQNYPT DLELAAVVFALKIWRH+LYG+KIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 282
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

[Close]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL
Match: A0A5A7UPX4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 4.2e-135
Identity = 255/324 (78.70%), Postives = 266/324 (82.10%), Query Frame = 0


Query: 1   MSFGFTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHEEHLHQVLETHRANK 60
           MSFG TNAPAVFMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEHEEHL QVLET RAN+
Sbjct: 461 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLRQVLETLRANR 520

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDSAKIEAITSWPRPSIVSKICSFLSLAGYYR 120
           LYAKFSKCEFWLKKV+FLGHVVSSEGVSVD AKIEA+T+WPRPS VS+I SFL LAGYYR
Sbjct: 521 LYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 580

Query: 121 RFVEDFSRIASPLTH--------------------------------------------D 180
           RFVEDFSRIASPLT                                             D
Sbjct: 581 RFVEDFSRIASPLTQLTRKGTPFVWSPTCQNSFQELKQKLVTAPVLTVPDGSESFVIYSD 640

Query: 181 ASKKGFGCVLMQQGRVVAYGSCQLKSHEQNYPTLDLELAAVVFALKIWRHFLYGDKIQIF 240
           ASKKG GCVLMQQG+V+AY SCQLKSHEQNYPT DLELA VVFALKIWRH+LYGDK+QIF
Sbjct: 641 ASKKGLGCVLMQQGKVIAYASCQLKSHEQNYPTHDLELAIVVFALKIWRHYLYGDKMQIF 700

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 281
           TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA+ALSRKVAHSAALITK
Sbjct: 701 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVAEALSRKVAHSAALITK 760

[Close]

BLAST of Cmc03g0060861 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-17
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 48  HLHQVLETHRANKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDSAKIEAITSWPRPSI 107
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS D AK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSKICSFLSLAGYYRRFVEDFSRIASPLT 135
            +++  FL L GYYRRFV+++ +I  PLT
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:

BLAST of Cmc03g0060861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066469.1	1.6e-136	76.32	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	5.1e-135	79.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	5.1e-135	79.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	5.1e-135	79.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0057168.1	8.7e-135	78.70	pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var...	[more]

BLAST of Cmc03g0060861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.8e-43	35.17	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.2e-40	33.45	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	2.9e-40	32.34	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	2.5e-39	29.84	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	4.8e-35	34.24	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0060861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMK1	7.7e-137	76.32	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=...	[more]
A0A5A7V6R2	2.5e-135	79.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7V4E4	2.5e-135	79.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7VMR4	2.5e-135	79.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UPX4	4.2e-135	78.70	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 P...	[more]

BLAST of Cmc03g0060861 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.9e-17	43.82	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 133..225 e-value: 2.2E-30 score: 105.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 3.0E-33 score: 116.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..248 e-value: 5.9E-16 score: 60.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.0E-14 score: 54.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.527134
None	No IPR available	GENE3D	3.10.20.370		coord: 134..196 e-value: 1.8E-6 score: 29.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 78..134 coord: 136..250
None	No IPR available	PANTHER	PTHR24559:SF383	DNA/RNA POLYMERASES SUPERFAMILY PROTEIN	coord: 78..134 coord: 136..250
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.60645E-36 score: 126.941
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 136..247 e-value: 2.01201E-56 score: 176.144
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0060861.1	Cmc03g0060861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding