Cmc03g0060761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0060761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 1007726 .. 1008259 (-)
RNA-Seq Expression	Cmc03g0060761
Synteny	Cmc03g0060761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGCACTGTCTCAAGCAACTTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTTAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTAAGGATATGAGACGTATTCTCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTGAGAATAATCAGTAGGTATCAGTCTAATCCAGGGTTAGACCACTGGACTGCGGTTAAAATTATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGCATGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCTACATCGGGATCAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCATAACATCAAGCAAGGATGCATTGCAAACTCTACAATGGAGGCTGATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGTAG

mRNA sequence

ATGCTAGCACTGTCTCAAGCAACTTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTTAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTAAGGATATGAGACGTATTCTCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTGAGAATAATCAGTAGGTATCAGTCTAATCCAGGGTTAGACCACTGGACTGCGGTTAAAATTATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGCATGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCTACATCGGGATCAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCATAACATCAAGCAAGGATGCATTGCAAACTCTACAATGGAGGCTGATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGTAG

Coding sequence (CDS)

ATGCTAGCACTGTCTCAAGCAACTTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAGGGTTTATTACCTTTTAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAGAAGTTAAGGATATGAGACGTATTCTCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTGAGAATAATCAGTAGGTATCAGTCTAATCCAGGGTTAGACCACTGGACTGCGGTTAAAATTATTCTCAAGTATCTTAGAAGAACGAGAGACTACATGCATGTGTATGGAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCTACATCGGGATCAGTGTTCACCCTAAATGGGGGAGCTGTAGTATGGCATAACATCAAGCAAGGATGCATTGCAAACTCTACAATGGAGGCTGATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGTAG

Protein sequence

MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGSLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEADTSLLVKQQKK

Homology

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BLAST of Cmc03g0060761 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.7e-82
Identity = 153/166 (92.17%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 2    LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
            LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 959  LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 1018

Query: 62   LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
            LMYAMLCTRPDICYAV I+SRYQSNPGLDHWTAVKI+LKYLRRTRDYM VYGAKDLILTG
Sbjct: 1019 LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTG 1078

Query: 122  YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
            YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 1079 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 1124

[Close]

BLAST of Cmc03g0060761 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.7e-82
Identity = 153/166 (92.17%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 833 LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 892

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMYAMLCTRPDICYAV I+SRYQSNPGLDHWTAVKI+LKYLRRTRDYM VYGAKDLILTG
Sbjct: 893 LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTG 952

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 953 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 998

[Close]

BLAST of Cmc03g0060761 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 24  LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 83

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMY MLCTRPDICYAV I+SRYQSNPGLDHWTAVKIILKYLRRTRDYM VYGAKDLILTG
Sbjct: 84  LMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTG 143

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 144 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 189

[Close]

BLAST of Cmc03g0060761 vs. NCBI nr
Match: KAA0064276.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK01011.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-81
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVG 60
           MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEV+DMRRI YAS VG
Sbjct: 1   MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASAVG 60

Query: 61  SLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILT 120
           SLMY  LCTR DICYAV I+SRYQSNPGLDHWT VKIILKYLRRT+DYM VYGAKDLILT
Sbjct: 61  SLMYVKLCTRLDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTKDYMLVYGAKDLILT 120

Query: 121 GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEADTSLLVKQQKK 178
           GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVW NIKQGCIA+STMEA+     +  KK
Sbjct: 121 GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQGCIADSTMEAEYVAACEVAKK 177

[Close]

BLAST of Cmc03g0060761 vs. NCBI nr
Match: KAA0043583.1 (putative Integrase core domain [Cucumis melo var. makuwa])

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-81
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEV+DMRRI YASVVGS
Sbjct: 634 LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASVVGS 693

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMY ML TRPDICYAV I+SRYQSNPGLDHWTAVKIILKYLRRTRDYM VY AKDLILTG
Sbjct: 694 LMYVMLYTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYEAKDLILTG 753

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKD RKSTSGSVFTLNGGA+VWH+IKQGCIA+STMEA+
Sbjct: 754 YTDSDFQTDKDHRKSTSGSVFTLNGGALVWHSIKQGCIADSTMEAE 799

[Close]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-40
Identity = 82/166 (49.40%), Postives = 114/166 (68.67%), Query Frame = 0


Query: 2    LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
            L LSQ  YI+++L R++M+N+K    P    + LSK+ CP T +E  +M ++ Y+S VGS
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGS 1117

Query: 62   LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
            LMYAM+CTRPDI +AV ++SR+  NPG +HW AVK IL+YLR T      +G  D IL G
Sbjct: 1118 LMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKG 1177

Query: 122  YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
            YTD+D   D D+RKS++G +FT +GGA+ W +  Q C+A ST EA+
Sbjct: 1178 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223

[Close]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-21
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 50  MRRILYASVVGSLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDY- 109
           M+ + Y S VG++MY M+ TRPD+  AV ++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 110 MHVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTME 166
           +    A    L GY+D+D+  D +SR+STSG +F LNGG V W + KQ  +A S+ E
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTE 117

[Close]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 4    LSQATYIDKMLVRYSMQNSKKGLLPFRHGVH---LSKEQCPKTPQEVKDMRRILYASVVG 63
            LSQ+ Y+ K+L +++M+N      P    ++   L+ ++   TP            S++G
Sbjct: 1137 LSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTP----------CRSLIG 1196

Query: 64   SLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYG---AKDL 123
             LMY MLCTRPD+  AV I+SRY S    + W  +K +L+YL+ T D   ++    A + 
Sbjct: 1197 CLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFEN 1256

Query: 124  ILTGYTDSDFQTDKDSRKSTSGSVFTL-NGGAVVWHNIKQGCIANSTMEAD 168
             + GY DSD+   +  RKST+G +F + +   + W+  +Q  +A S+ EA+
Sbjct: 1257 KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAE 1297

[Close]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-16
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 2    LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
            L LSQ  Y   +L R +M  +K    P      L+     K P   +      Y  +VGS
Sbjct: 1181 LHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE------YRGIVGS 1240

Query: 62   LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDY-MHVYGAKDLILT 121
            L Y +  TRPD+ YAV  +S+Y   P  DHW A+K +L+YL  T D+ + +     L L 
Sbjct: 1241 LQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLH 1300

Query: 122  GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
             Y+D+D+  D D   ST+G +  L    + W + KQ  +  S+ EA+
Sbjct: 1301 AYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1340

[Close]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 56/167 (33.53%), Postives = 82/167 (49.10%), Query Frame = 0


Query: 2    LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
            L LSQ  YI  +L R +M  +K    P      LS     K     +      Y  +VGS
Sbjct: 1198 LHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE------YRGIVGS 1257

Query: 62   LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDY-MHVYGAKDLILT 121
            L Y +  TRPDI YAV  +S++   P  +H  A+K IL+YL  T ++ + +     L L 
Sbjct: 1258 LQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLH 1317

Query: 122  GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
             Y+D+D+  DKD   ST+G +  L    + W + KQ  +  S+ EA+
Sbjct: 1318 AYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1357

[Close]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 153/166 (92.17%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 2    LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
            LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 959  LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 1018

Query: 62   LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
            LMYAMLCTRPDICYAV I+SRYQSNPGLDHWTAVKI+LKYLRRTRDYM VYGAKDLILTG
Sbjct: 1019 LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTG 1078

Query: 122  YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
            YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 1079 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 1124

[Close]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 153/166 (92.17%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 833 LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 892

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMYAMLCTRPDICYAV I+SRYQSNPGLDHWTAVKI+LKYLRRTRDYM VYGAKDLILTG
Sbjct: 893 LMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTG 952

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 953 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 998

[Close]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.4e-82
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDK+LVRYSMQNSKKGLLPFRHGVHLSKEQ PKTPQEV+DMRRI YAS VGS
Sbjct: 24  LALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGS 83

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMY MLCTRPDICYAV I+SRYQSNPGLDHWTAVKIILKYLRRTRDYM VYGAKDLILTG
Sbjct: 84  LMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTG 143

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKDSRKSTSGSVFTLNGGAVVW +IKQGCIA+STMEA+
Sbjct: 144 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAE 189

[Close]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL
Match: A0A5A7VD16 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00080 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVG 60
           MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEV+DMRRI YAS VG
Sbjct: 1   MLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASAVG 60

Query: 61  SLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILT 120
           SLMY  LCTR DICYAV I+SRYQSNPGLDHWT VKIILKYLRRT+DYM VYGAKDLILT
Sbjct: 61  SLMYVKLCTRLDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTKDYMLVYGAKDLILT 120

Query: 121 GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEADTSLLVKQQKK 178
           GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVW NIKQGCIA+STMEA+     +  KK
Sbjct: 121 GYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQGCIADSTMEAEYVAACEVAKK 177

[Close]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL
Match: A0A5A7TJH9 (Putative Integrase core domain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00110 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVVGS 61
           LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEV+DMRRI YASVVGS
Sbjct: 634 LALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASVVGS 693

Query: 62  LMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGAKDLILTG 121
           LMY ML TRPDICYAV I+SRYQSNPGLDHWTAVKIILKYLRRTRDYM VY AKDLILTG
Sbjct: 694 LMYVMLYTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYMLVYEAKDLILTG 753

Query: 122 YTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           YTDSDFQTDKD RKSTSGSVFTLNGGA+VWH+IKQGCIA+STMEA+
Sbjct: 754 YTDSDFQTDKDHRKSTSGSVFTLNGGALVWHSIKQGCIADSTMEAE 799

[Close]

BLAST of Cmc03g0060761 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 55  YASVVGSLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDYMHVYGA 114
           Y  ++G LMY  + TR DI +AV  +S++   P L H  AV  IL Y++ T      Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 115 K-DLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           + ++ L  ++D+ FQ+ KD+R+ST+G    L    + W + KQ  ++ S+ EA+
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAE 490

[Close]

BLAST of Cmc03g0060761 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.5e-10
Identity = 48/169 (28.40%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 2   LALSQATYIDKMLVRYSMQNSK--KGLLPFRHGVHLSKEQCPKTPQEVKDMRRILYASVV 61
           L LSQ  Y +++L    M + K     LP +    +S  + P    +  D R     S+V
Sbjct: 54  LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP----DPSDFR-----SIV 113

Query: 62  GSLMYAMLCTRPDICYAVRIISRYQSNPGLDHWTAVKIILKYLRRTRDY-MHVYGAKDLI 121
           G+L Y  L TRPDI YAV I+ +    P L  +  +K +L+Y++ T  + ++++    L 
Sbjct: 114 GALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN 173

Query: 122 LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWHNIKQGCIANSTMEAD 168
           +  + DSD+     +R+ST+G    L    + W   +Q  ++ S+ E +
Sbjct: 174 VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETE 212

The following BLAST results are available for this feature:

BLAST of Cmc03g0060761 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	8.7e-82	92.17	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	8.7e-82	92.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	1.9e-81	92.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0064276.1	2.5e-81	87.57	gag/pol protein [Cucumis melo var. makuwa] >TYK01011.1 gag/pol protein [Cucumis ...	[more]
KAA0043583.1	3.3e-81	92.17	putative Integrase core domain [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0060761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-40	49.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	6.8e-21	43.59	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	1.6e-17	32.75	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	6.6e-16	33.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-13	33.53	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc03g0060761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	4.2e-82	92.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	4.2e-82	92.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	9.4e-82	92.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7VD16	1.2e-81	87.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G0008...	[more]
A0A5A7TJH9	1.6e-81	92.17	Putative Integrase core domain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cmc03g0060761 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.3e-11	34.21	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.5e-10	28.40	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 41..141
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 41..141
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 120..166 e-value: 6.6732E-19 score: 76.3529

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0060761.1	Cmc03g0060761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding