Cmc03g0059921 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0059921
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 155093 .. 156100 (+)
RNA-Seq Expression	Cmc03g0059921
Synteny	Cmc03g0059921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCAAAAGAATACGCTATTTTACAGCAGGCAATTGAAGAATTGCTGATAAAAGGACATATCCAACCAAGCTTAAGTCCATGTGCAGTCCCTGCCTTACTAACACCAAAGAAAGATGGAAGTTGGAGGATGTGCATTGATAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCCTACTCCAAGAATAAATGAACTACTTGACCAACTTGGAGAAGCAGGGATTTTTTCTAAAATTGACCTAAAGAGTGGTTATGACCAGATTAGAATCAGGCCCGGAGATGAATGGAAGACAGTATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACACTCCTAGCACTTTCATGAGACTCATGAACCAAGTACTTCATCATTTCCTTAATAAATTTGTCGTTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATCCACATCTATACCAAGTGTTCAAAGTGCTGGCCTTTTGTGTAGAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTAATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGGCCAATACCGAAATCAATAAAAGAAGTACAAGCATTCCTAGGCTTGGCATCATTCTACAAGAAGTTCATTTATAACTTCAGTACCATTGCCGCCTCAATTACAGACTGCCTAAAGAAGGGAGGCTTCCTATGGGGAAAGAAACAACAAGATAGCTTTGAAGCATTGAAGAAAAAGCTTAGTAATAAACCAGTCCTAAAACTCCCCAAGTTTACACAGCCATTTGAAGTAGTTGTTGATGCCTCCGGGACTGGCACTGGAGCTGTCTTATCTCAATCAGGTCATCCCATTGAGTACTTCAGTGAAAAACTCAACCAATCAAGACAGATGTGGAGCACTTATGAGCAAGAAATGTATGCTCTCGTCCGAGCACTAAAAACAATGGGAGCACTGCCTACTATCTAA

mRNA sequence

ATGAGCCCAAAAGAATACGCTATTTTACAGCAGGCAATTGAAGAATTGCTGATAAAAGGACATATCCAACCAAGCTTAAGTCCATGTGCAGTCCCTGCCTTACTAACACCAAAGAAAGATGGAAGTTGGAGGATGTGCATTGATAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCCTACTCCAAGAATAAATGAACTACTTGACCAACTTGGAGAAGCAGGGATTTTTTCTAAAATTGACCTAAAGAGTGGTTATGACCAGATTAGAATCAGGCCCGGAGATGAATGGAAGACAGTATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACACTCCTAGCACTTTCATGAGACTCATGAACCAAGTACTTCATCATTTCCTTAATAAATTTGTCGTTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATCCACATCTATACCAAGTGTTCAAAGTGCTGGCCTTTTGTGTAGAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTAATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGGCCAATACCGAAATCAATAAAAGAAGTACAAGCATTCCTAGGCTTGGCATCATTCTACAAGAAGTTCATTTATAACTTCAGTACCATTGCCGCCTCAATTACAGACTGCCTAAAGAAGGGAGGCTTCCTATGGGGAAAGAAACAACAAGATAGCTTTGAAGCATTGAAGAAAAAGCTTAGTAATAAACCAGTCCTAAAACTCCCCAAGTTTACACAGCCATTTGAAGTAGTTGTTGATGCCTCCGGGACTGGCACTGGAGCTGTCTTATCTCAATCAGGTCATCCCATTGAGTACTTCAGTGAAAAACTCAACCAATCAAGACAGATGTGGAGCACTTATGAGCAAGAAATGTATGCTCTCGTCCGAGCACTAAAAACAATGGGAGCACTGCCTACTATCTAA

Coding sequence (CDS)

ATGAGCCCAAAAGAATACGCTATTTTACAGCAGGCAATTGAAGAATTGCTGATAAAAGGACATATCCAACCAAGCTTAAGTCCATGTGCAGTCCCTGCCTTACTAACACCAAAGAAAGATGGAAGTTGGAGGATGTGCATTGATAGCAGGACAATCAACAAAATCACAGTAAAATACAGGTTCCCTACTCCAAGAATAAATGAACTACTTGACCAACTTGGAGAAGCAGGGATTTTTTCTAAAATTGACCTAAAGAGTGGTTATGACCAGATTAGAATCAGGCCCGGAGATGAATGGAAGACAGTATTCAAAACAAATGAAGGCCTCTTTGAATGGCTTGTGATGCCATTTGGGCTCTCCAACACTCCTAGCACTTTCATGAGACTCATGAACCAAGTACTTCATCATTTCCTTAATAAATTTGTCGTTGTTTATTTTGATGATATCTTGGTTTTTAGCAGATGCCTAGAAGAGCATAATCCACATCTATACCAAGTGTTCAAAGTGCTGGCCTTTTGTGTAGAAGAAATAGCATTCTTGGGATTTATTATCAAGAAGAATCACATCCTAATGGATGAAAAGAAAGTCGAGGCAATTAGAAACTGGCCAATACCGAAATCAATAAAAGAAGTACAAGCATTCCTAGGCTTGGCATCATTCTACAAGAAGTTCATTTATAACTTCAGTACCATTGCCGCCTCAATTACAGACTGCCTAAAGAAGGGAGGCTTCCTATGGGGAAAGAAACAACAAGATAGCTTTGAAGCATTGAAGAAAAAGCTTAGTAATAAACCAGTCCTAAAACTCCCCAAGTTTACACAGCCATTTGAAGTAGTTGTTGATGCCTCCGGGACTGGCACTGGAGCTGTCTTATCTCAATCAGGTCATCCCATTGAGTACTTCAGTGAAAAACTCAACCAATCAAGACAGATGTGGAGCACTTATGAGCAAGAAATGTATGCTCTCGTCCGAGCACTAAAAACAATGGGAGCACTGCCTACTATCTAA

Protein sequence

MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVLAFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGAVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALKTMGALPTI

Homology

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BLAST of Cmc03g0059921 vs. NCBI nr
Match: TYK06567.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 596.3 bits (1536), Expect = 1.7e-166
Identity = 300/328 (91.46%), Postives = 305/328 (92.99%), Query Frame = 0


Query: 20  GHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF 79
           GH  PS S   +PALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF
Sbjct: 219 GH--PSNSYPPLPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF 278

Query: 80  SKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTFMRLMNQVLHHFLN 139
           SKIDLKSGYDQIRI+PGDEWKT FKTNEGLFEWLVMPFGLSN PSTFMRLMNQVLHHFLN
Sbjct: 279 SKIDLKSGYDQIRIKPGDEWKTAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHHFLN 338

Query: 140 KFVVVYFDDILVFSRCLEEHNPHLYQVFKVLA------------FCVEEIAFLGFIIKKN 199
           KFVVVYFDDILVFSRCL+EHN HLYQVF+VLA            FCVEEIAFLGFIIKKN
Sbjct: 339 KFVVVYFDDILVFSRCLQEHNTHLYQVFEVLAKNELYINLKKCTFCVEEIAFLGFIIKKN 398

Query: 200 HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAASITDCLKKGGFLWG 259
           HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFY+KFIYNFSTIAASITDCLKKGGFLWG
Sbjct: 399 HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYRKFIYNFSTIAASITDCLKKGGFLWG 458

Query: 260 KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGAVLSQSGHPIEYFSEKLNQ 319
           KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDAS TGTGAVLSQSGHPIEYFSEKLNQ
Sbjct: 459 KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASRTGTGAVLSQSGHPIEYFSEKLNQ 518

Query: 320 SRQMWSTYEQEMYALVRALKTMGALPTI 336
           SRQM STYEQEMYALVRALKTMGALPTI
Sbjct: 519 SRQMLSTYEQEMYALVRALKTMGALPTI 544

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BLAST of Cmc03g0059921 vs. NCBI nr
Match: KAA0054966.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK22755.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 495.0 bits (1273), Expect = 5.2e-136
Identity = 245/339 (72.27%), Postives = 275/339 (81.12%), Query Frame = 0


Query: 1    MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
            MSP EY IL  AIEELL KGHI+PS S C VPALLTPKKDG+WRMC+DSR INKITVKYR
Sbjct: 682  MSPNEYKILHDAIEELLKKGHIKPSFSLCVVPALLTPKKDGTWRMCVDSRAINKITVKYR 741

Query: 61   FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
            FP PR+++LLDQLG A IFSKIDL+S Y QIRIRPGDEWKT FKTNEGLFEWLVMPF LS
Sbjct: 742  FPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFKTNEGLFEWLVMPFDLS 801

Query: 121  NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL---------- 180
            N PSTFMRLMN+VLH FLNKF++VYFDDILVFS+  ++H  H+ Q+F+VL          
Sbjct: 802  NAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHIDQLFQVLNHNELYVNLK 861

Query: 181  --AFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
               FC  EIAFLGFII+K+H+LMDEKKVEAI+NW  P ++ +VQAFLGLASFY+KFI N 
Sbjct: 862  KCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKNWSTPTTVIQVQAFLGLASFYRKFIQNC 921

Query: 241  STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
            S+IAA ITDCLKKG F WG KQQDSF  LK+ L N  VLKLP F Q FEV VD  GTG G
Sbjct: 922  SSIAAPITDCLKKGAFEWGPKQQDSFNLLKESLRNILVLKLPDFFQAFEVAVDTCGTGIG 981

Query: 301  AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
            AVLSQ  HPIEYFSE+L++SRQ WSTYEQE+YALVRALK
Sbjct: 982  AVLSQQEHPIEYFSEELSKSRQSWSTYEQELYALVRALK 1020

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BLAST of Cmc03g0059921 vs. NCBI nr
Match: KAA0051933.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 2.6e-127
Identity = 229/295 (77.63%), Postives = 253/295 (85.76%), Query Frame = 0


Query: 45  MCIDSRTINKITVKYRFPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFK 104
           MC+DSR IN+I VKYRFP PRIN+LLDQLG A IFSKIDL+SGY QIRIRPGDEWKT FK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 105 TNEGLFEWLVMPFGLSNTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLY 164
           TNEGLF+WLVMPFGLSN PSTFMRLMNQVLH FLNKFV+VYFDDIL FSR L+EH+ HL 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 165 QVFKVLA------------FCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQ 224
           Q+F+ LA            FCVEEIAFLGFII+KNHILMDEKKVEAI+NWPIP S+KEVQ
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQ 180

Query: 225 AFLGLASFYKKFIYNFSTIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKF 284
           AF+GLASFY+KFI+NF TIAA I DCLKKG FLWG K+QDSFE LK+KLSN P+L+LP F
Sbjct: 181 AFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKLSNNPILELPDF 240

Query: 285 TQPFEVVVDASGTGTGAVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
           +QPFEV VDA GTG G+ LSQ+GHPIE+FSEKL  SRQ WSTYEQEMYALVRALK
Sbjct: 241 SQPFEVAVDACGTGIGSFLSQTGHPIEFFSEKLCPSRQTWSTYEQEMYALVRALK 295

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BLAST of Cmc03g0059921 vs. NCBI nr
Match: PWA81295.1 (transposon Ty3-I Gag-Pol polyprotein [Artemisia annua])

HSP 1 Score: 437.6 bits (1124), Expect = 9.9e-119
Identity = 208/339 (61.36%), Postives = 265/339 (78.17%), Query Frame = 0


Query: 1    MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
            MSPKE  IL++ +EELL KGHIQ S+SPCAVPALLTPKKDGSWRMC+DSR INKITV+YR
Sbjct: 672  MSPKESDILREKVEELLRKGHIQESISPCAVPALLTPKKDGSWRMCVDSRAINKITVRYR 731

Query: 61   FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
            FP PR+++LLDQL  A +FSKIDL+SGY QIRI+PGDEWKT FKT +GL+EWLVMPFGLS
Sbjct: 732  FPIPRLDDLLDQLSGAKLFSKIDLRSGYHQIRIKPGDEWKTAFKTKDGLYEWLVMPFGLS 791

Query: 121  NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL---------- 180
            N PSTFMRLM QVL  F+ KFVVVYFDDILV+S+  +EH  HL +V K L          
Sbjct: 792  NAPSTFMRLMTQVLRPFMGKFVVVYFDDILVYSQTEKEHLDHLRKVLKALTENELFVNLK 851

Query: 181  --AFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
               F   ++ FLG+I+  + I +DE KV+A+R+WP PK++ EV++F GLA+FY++F+ NF
Sbjct: 852  KCTFLTNKLLFLGYIVSSDGIHVDEDKVKAVRDWPSPKTLTEVRSFHGLATFYRRFVRNF 911

Query: 241  STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
            S+I A IT+C+KKG F W ++ ++SF+ +K++L+  PVL LP F   FE+  DA GTG G
Sbjct: 912  SSIVAPITNCMKKGPFKWTQEAEESFKIIKERLTTAPVLSLPNFDNVFELECDACGTGIG 971

Query: 301  AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
            AVLSQ G P+ + SEKLN++RQ WSTYEQE+YA+V+A+K
Sbjct: 972  AVLSQEGRPVAFHSEKLNEARQKWSTYEQELYAVVQAMK 1010

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BLAST of Cmc03g0059921 vs. NCBI nr
Match: VVA31129.1 (PREDICTED: reverse mRNAase, partial [Prunus dulcis])

HSP 1 Score: 432.2 bits (1110), Expect = 4.1e-117
Identity = 209/339 (61.65%), Postives = 259/339 (76.40%), Query Frame = 0


Query: 1   MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
           MSPKE  IL++ IEELL KG I+ SLSPCAVP LL PKKD +WRMC+DSR INKITVKYR
Sbjct: 54  MSPKENDILREQIEELLQKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKYR 113

Query: 61  FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
           FP PR+ ++LD L  + +FSKIDL+SGY QIRIRPGDEWKT FK+ +GLFEWLVMPFGLS
Sbjct: 114 FPIPRLEDMLDVLSGSRVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLS 173

Query: 121 NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL---------- 180
           N PSTFMRLMNQVL  F+  FVVVYFDDIL++S   EEH  HL QV  VL          
Sbjct: 174 NAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLYVNLK 233

Query: 181 --AFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
              FC  ++ FLGF++ +N I +D++K++AI +WP PK++ EV++F GLA+FY++F+ +F
Sbjct: 234 KCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYRRFVRHF 293

Query: 241 STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
           S+IAA IT+CLKKG F WG++Q+ SF  +K+KL   PVL LP F + FEV  DASG G G
Sbjct: 294 SSIAAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVG 353

Query: 301 AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
           AVLSQ   P+ +FSEKL+ +RQ WSTY+QE YA+VRALK
Sbjct: 354 AVLSQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALK 392

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BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-66
Identity = 142/339 (41.89%), Postives = 200/339 (59.00%), Query Frame = 0


Query: 9   LQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGS-----WRMCIDSRTINKITVKYRFPT 68
           ++  I+++L +G I+ S SP   P  + PKK  +     +R+ ID R +N+ITV  R P 
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 69  PRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTP 128
           P ++E+L +LG    F+ IDL  G+ QI + P    KT F T  G +E+L MPFGL N P
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 129 STFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVLA------------ 188
           +TF R MN +L   LNK  +VY DDI+VFS  L+EH   L  VF+ LA            
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402

Query: 189 FCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTI 248
           F  +E  FLG ++  + I  + +K+EAI+ +PIP   KE++AFLGL  +Y+KFI NF+ I
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462

Query: 249 AASITDCLKKGGFL--WGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGA 308
           A  +T CLKK   +     +   +F+ LK  +S  P+LK+P FT+ F +  DAS    GA
Sbjct: 463 AKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGA 522

Query: 309 VLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALKT 329
           VLSQ GHP+ Y S  LN+    +ST E+E+ A+V A KT
Sbjct: 523 VLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKT 561

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BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-62
Identity = 137/339 (40.41%), Postives = 197/339 (58.11%), Query Frame = 0


Query: 9   LQQAIEELLIKGHIQPSLSPCAVPALLTPKKD-----GSWRMCIDSRTINKITVKYRFPT 68
           ++  ++E+L +G I+ S SP   P  + PKK        +R+ ID R +N+IT+  R+P 
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 69  PRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTP 128
           P ++E+L +LG+   F+ IDL  G+ QI +      KT F T  G +E+L MPFGL N P
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 129 STFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVLA------------ 188
           +TF R MN +L   LNK  +VY DDI++FS  L EH   +  VF  LA            
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

Query: 189 FCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTI 248
           F  +E  FLG I+  + I  +  KV+AI ++PIP   KE++AFLGL  +Y+KFI N++ I
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461

Query: 249 AASITDCLKKGGFLWGKKQQ--DSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGA 308
           A  +T CLKK   +  +K +  ++FE LK  +   P+L+LP F + F +  DAS    GA
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521

Query: 309 VLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALKT 329
           VLSQ+GHPI + S  LN     +S  E+E+ A+V A KT
Sbjct: 522 VLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKT 560

[Close]

BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-59
Identity = 136/338 (40.24%), Postives = 188/338 (55.62%), Query Frame = 0


Query: 9   LQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINE 68
           + + +++LL    I PS SPC+ P +L PKKDG++R+C+D RT+NK T+   FP PRI+ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 69  LLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTFMR 128
           LL ++G A IF+ +DL SGY QI + P D +KT F T  G +E+ VMPFGL N PSTF R
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 129 LMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVF------------KVLAFCVEE 188
            M         +FV VY DDIL+FS   EEH  HL  V             K   F  EE
Sbjct: 758 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 817

Query: 189 IAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAASIT 248
             FLG+ I    I   + K  AIR++P PK++K+ Q FLG+ ++Y++FI N S IA  I 
Sbjct: 818 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQ 877

Query: 249 --DCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGAVLSQS 308
              C K     W +KQ  + E LK  L N PVL        + +  DAS  G GAVL + 
Sbjct: 878 LFICDKS---QWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEV 937

Query: 309 GHP------IEYFSEKLNQSRQMWSTYEQEMYALVRAL 327
            +       + YFS+ L  +++ +   E E+  +++AL
Sbjct: 938 DNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKAL 970

[Close]

BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 229.9 bits (585), Expect = 4.1e-59
Identity = 135/338 (39.94%), Postives = 188/338 (55.62%), Query Frame = 0


Query: 9   LQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINE 68
           + + +++LL    I PS SPC+ P +L PKKDG++R+C+D RT+NK T+   FP PRI+ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 69  LLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTFMR 128
           LL ++G A IF+ +DL SGY QI + P D +KT F T  G +E+ VMPFGL N PSTF R
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 129 LMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVF------------KVLAFCVEE 188
            M         +FV VY DDIL+FS   EEH  HL  V             K   F  EE
Sbjct: 732 YMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 791

Query: 189 IAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAASIT 248
             FLG+ I    I   + K  AIR++P PK++K+ Q FLG+ ++Y++FI N S IA  I 
Sbjct: 792 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQ 851

Query: 249 --DCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGAVLSQS 308
              C K     W +KQ  + + LK  L N PVL        + +  DAS  G GAVL + 
Sbjct: 852 LFICDKS---QWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEV 911

Query: 309 GHP------IEYFSEKLNQSRQMWSTYEQEMYALVRAL 327
            +       + YFS+ L  +++ +   E E+  +++AL
Sbjct: 912 DNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKAL 944

[Close]

BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-55
Identity = 131/345 (37.97%), Postives = 194/345 (56.23%), Query Frame = 0


Query: 13  IEELLIKGHIQPSLSPCAVPALLTPKK------DGSWRMCIDSRTINKITVKYRFPTPRI 72
           +++LL  G I+PS SP   P  +  KK      + + R+ ID R +N+ T+  R+P P I
Sbjct: 201 VKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSI 260

Query: 73  NELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTF 132
             +L  LG+A  F+ +DLKSGY QI +   D  KT F  N G +E+  +PFGL N  S F
Sbjct: 261 PMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIF 320

Query: 133 MRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL------------AFCV 192
            R ++ VL   + K   VY DD+++FS    +H  H+  V K L             F  
Sbjct: 321 QRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFK 380

Query: 193 EEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAAS 252
           E + +LGFI+ K+    D +KV+AI+ +P P  + +V++FLGLAS+Y+ FI +F+ IA  
Sbjct: 381 ESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARP 440

Query: 253 ITDCL------------KKGGFLWGKKQQDSFEALKKKLSNKPV-LKLPKFTQPFEVVVD 312
           ITD L            KK    + + Q+++F+ L+  L+++ V LK P F +PF++  D
Sbjct: 441 ITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTD 500

Query: 313 ASGTGTGAVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRAL 327
           AS +G GAVLSQ G PI   S  L Q  Q ++T E+E+ A+V AL
Sbjct: 501 ASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWAL 545

[Close]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL
Match: A0A5D3C402 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00280 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 8.0e-167
Identity = 300/328 (91.46%), Postives = 305/328 (92.99%), Query Frame = 0


Query: 20  GHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF 79
           GH  PS S   +PALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF
Sbjct: 219 GH--PSNSYPPLPALLTPKKDGSWRMCIDSRTINKITVKYRFPTPRINELLDQLGEAGIF 278

Query: 80  SKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLSNTPSTFMRLMNQVLHHFLN 139
           SKIDLKSGYDQIRI+PGDEWKT FKTNEGLFEWLVMPFGLSN PSTFMRLMNQVLHHFLN
Sbjct: 279 SKIDLKSGYDQIRIKPGDEWKTAFKTNEGLFEWLVMPFGLSNAPSTFMRLMNQVLHHFLN 338

Query: 140 KFVVVYFDDILVFSRCLEEHNPHLYQVFKVLA------------FCVEEIAFLGFIIKKN 199
           KFVVVYFDDILVFSRCL+EHN HLYQVF+VLA            FCVEEIAFLGFIIKKN
Sbjct: 339 KFVVVYFDDILVFSRCLQEHNTHLYQVFEVLAKNELYINLKKCTFCVEEIAFLGFIIKKN 398

Query: 200 HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNFSTIAASITDCLKKGGFLWG 259
           HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFY+KFIYNFSTIAASITDCLKKGGFLWG
Sbjct: 399 HILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYRKFIYNFSTIAASITDCLKKGGFLWG 458

Query: 260 KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTGAVLSQSGHPIEYFSEKLNQ 319
           KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDAS TGTGAVLSQSGHPIEYFSEKLNQ
Sbjct: 459 KKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASRTGTGAVLSQSGHPIEYFSEKLNQ 518

Query: 320 SRQMWSTYEQEMYALVRALKTMGALPTI 336
           SRQM STYEQEMYALVRALKTMGALPTI
Sbjct: 519 SRQMLSTYEQEMYALVRALKTMGALPTI 544

[Close]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.5e-136
Identity = 245/339 (72.27%), Postives = 275/339 (81.12%), Query Frame = 0


Query: 1    MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
            MSP EY IL  AIEELL KGHI+PS S C VPALLTPKKDG+WRMC+DSR INKITVKYR
Sbjct: 682  MSPNEYKILHDAIEELLKKGHIKPSFSLCVVPALLTPKKDGTWRMCVDSRAINKITVKYR 741

Query: 61   FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
            FP PR+++LLDQLG A IFSKIDL+S Y QIRIRPGDEWKT FKTNEGLFEWLVMPF LS
Sbjct: 742  FPIPRVSDLLDQLGGACIFSKIDLRSDYHQIRIRPGDEWKTAFKTNEGLFEWLVMPFDLS 801

Query: 121  NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL---------- 180
            N PSTFMRLMN+VLH FLNKF++VYFDDILVFS+  ++H  H+ Q+F+VL          
Sbjct: 802  NAPSTFMRLMNKVLHPFLNKFIIVYFDDILVFSKTYDQHLQHIDQLFQVLNHNELYVNLK 861

Query: 181  --AFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
               FC  EIAFLGFII+K+H+LMDEKKVEAI+NW  P ++ +VQAFLGLASFY+KFI N 
Sbjct: 862  KCIFCSNEIAFLGFIIRKDHVLMDEKKVEAIKNWSTPTTVIQVQAFLGLASFYRKFIQNC 921

Query: 241  STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
            S+IAA ITDCLKKG F WG KQQDSF  LK+ L N  VLKLP F Q FEV VD  GTG G
Sbjct: 922  SSIAAPITDCLKKGAFEWGPKQQDSFNLLKESLRNILVLKLPDFFQAFEVAVDTCGTGIG 981

Query: 301  AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
            AVLSQ  HPIEYFSE+L++SRQ WSTYEQE+YALVRALK
Sbjct: 982  AVLSQQEHPIEYFSEELSKSRQSWSTYEQELYALVRALK 1020

[Close]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL
Match: A0A5D3CPI6 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00330 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 1.3e-127
Identity = 229/295 (77.63%), Postives = 253/295 (85.76%), Query Frame = 0


Query: 45  MCIDSRTINKITVKYRFPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFK 104
           MC+DSR IN+I VKYRFP PRIN+LLDQLG A IFSKIDL+SGY QIRIRPGDEWKT FK
Sbjct: 1   MCVDSRAINRIVVKYRFPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFK 60

Query: 105 TNEGLFEWLVMPFGLSNTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLY 164
           TNEGLF+WLVMPFGLSN PSTFMRLMNQVLH FLNKFV+VYFDDIL FSR L+EH+ HL 
Sbjct: 61  TNEGLFKWLVMPFGLSNAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQ 120

Query: 165 QVFKVLA------------FCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQ 224
           Q+F+ LA            FCVEEIAFLGFII+KNHILMDEKKVEAI+NWPIP S+KEVQ
Sbjct: 121 QLFEALAKNELYINLKKCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQ 180

Query: 225 AFLGLASFYKKFIYNFSTIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKF 284
           AF+GLASFY+KFI+NF TIAA I DCLKKG FLWG K+QDSFE LK+KLSN P+L+LP F
Sbjct: 181 AFVGLASFYRKFIHNFITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKLSNNPILELPDF 240

Query: 285 TQPFEVVVDASGTGTGAVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
           +QPFEV VDA GTG G+ LSQ+GHPIE+FSEKL  SRQ WSTYEQEMYALVRALK
Sbjct: 241 SQPFEVAVDACGTGIGSFLSQTGHPIEFFSEKLCPSRQTWSTYEQEMYALVRALK 295

[Close]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL
Match: A0A2U1P6A2 (Transposon Ty3-I Gag-Pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA189480 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 4.8e-119
Identity = 208/339 (61.36%), Postives = 265/339 (78.17%), Query Frame = 0


Query: 1    MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
            MSPKE  IL++ +EELL KGHIQ S+SPCAVPALLTPKKDGSWRMC+DSR INKITV+YR
Sbjct: 672  MSPKESDILREKVEELLRKGHIQESISPCAVPALLTPKKDGSWRMCVDSRAINKITVRYR 731

Query: 61   FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
            FP PR+++LLDQL  A +FSKIDL+SGY QIRI+PGDEWKT FKT +GL+EWLVMPFGLS
Sbjct: 732  FPIPRLDDLLDQLSGAKLFSKIDLRSGYHQIRIKPGDEWKTAFKTKDGLYEWLVMPFGLS 791

Query: 121  NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPHLYQVFKVL---------- 180
            N PSTFMRLM QVL  F+ KFVVVYFDDILV+S+  +EH  HL +V K L          
Sbjct: 792  NAPSTFMRLMTQVLRPFMGKFVVVYFDDILVYSQTEKEHLDHLRKVLKALTENELFVNLK 851

Query: 181  --AFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
               F   ++ FLG+I+  + I +DE KV+A+R+WP PK++ EV++F GLA+FY++F+ NF
Sbjct: 852  KCTFLTNKLLFLGYIVSSDGIHVDEDKVKAVRDWPSPKTLTEVRSFHGLATFYRRFVRNF 911

Query: 241  STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
            S+I A IT+C+KKG F W ++ ++SF+ +K++L+  PVL LP F   FE+  DA GTG G
Sbjct: 912  SSIVAPITNCMKKGPFKWTQEAEESFKIIKERLTTAPVLSLPNFDNVFELECDACGTGIG 971

Query: 301  AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
            AVLSQ G P+ + SEKLN++RQ WSTYEQE+YA+V+A+K
Sbjct: 972  AVLSQEGRPVAFHSEKLNEARQKWSTYEQELYAVVQAMK 1010

[Close]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL
Match: A0A5B7BER3 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_036800 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.4e-118
Identity = 214/339 (63.13%), Postives = 258/339 (76.11%), Query Frame = 0


Query: 1   MSPKEYAILQQAIEELLIKGHIQPSLSPCAVPALLTPKKDGSWRMCIDSRTINKITVKYR 60
           MSPKE  ILQQ +E+L+ KG IQ S+SPCAVPALLTPKKDGSWRMC+DSR INKITVKYR
Sbjct: 660 MSPKENEILQQQVEDLINKGFIQESMSPCAVPALLTPKKDGSWRMCVDSRAINKITVKYR 719

Query: 61  FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIRPGDEWKTVFKTNEGLFEWLVMPFGLS 120
           FP PR+N++LD L  + IFSKIDL+SGY QIRIRPGDEWKT FKT EGL+EWLVMPFGLS
Sbjct: 720 FPIPRLNDMLDMLEGSKIFSKIDLRSGYHQIRIRPGDEWKTAFKTKEGLYEWLVMPFGLS 779

Query: 121 NTPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLEEHNPH------------LYQVFK 180
           N PSTFMR+MNQVL  F+ KFVVVYFDDIL++S+   EH  H            LY   K
Sbjct: 780 NAPSTFMRIMNQVLKPFIGKFVVVYFDDILIYSKSEREHLEHVREVLLALRESKLYINMK 839

Query: 181 VLAFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYKKFIYNF 240
              F    + FLGFII    I +DE+KV AIR+WP PK++ ++++F GLA+FY++FI NF
Sbjct: 840 KCCFLTTRLLFLGFIIGSEGIQVDEEKVRAIRDWPTPKTVHDIRSFHGLATFYRRFIRNF 899

Query: 241 STIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQPFEVVVDASGTGTG 300
           S+I A ITDC+KKG F W   Q+ SF  +K+KLS  PVL LP F + F+V  DAS TG G
Sbjct: 900 SSIVAPITDCMKKGKFRWEDDQEASFALIKEKLSTAPVLALPSFEKLFQVDCDASITGIG 959

Query: 301 AVLSQSGHPIEYFSEKLNQSRQMWSTYEQEMYALVRALK 328
           AVLSQ G P+E+FSEKLN++RQ W+TYE E++A+VRALK
Sbjct: 960 AVLSQEGRPVEFFSEKLNEARQKWTTYELELHAVVRALK 998

[Close]

BLAST of Cmc03g0059921 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.4e-15
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 157 EEHNPHLYQVFKVLAFCVEEIAFLG--FIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAF 216
           E+H    Y   K  AF   +IA+LG   II    +  D  K+EA+  WP PK+  E++ F
Sbjct: 12  EQH--QFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGF 71

Query: 217 LGLASFYKKFIYNFSTIAASITDCLKKGGFLWGKKQQDSFEALKKKLSNKPVLKLPKFTQ 276
           LGL  +Y++F+ N+  I   +T+ LKK    W +    +F+ALK  ++  PVL LP    
Sbjct: 72  LGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKL 131

The following BLAST results are available for this feature:

BLAST of Cmc03g0059921 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06567.1	1.7e-166	91.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0054966.1	5.2e-136	72.27	transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0051933.1	2.6e-127	77.63	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag...	[more]
PWA81295.1	9.9e-119	61.36	transposon Ty3-I Gag-Pol polyprotein [Artemisia annua]	[more]
VVA31129.1	4.1e-117	61.65	PREDICTED: reverse mRNAase, partial [Prunus dulcis]	[more]

BLAST of Cmc03g0059921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.2e-66	41.89	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.8e-62	40.41	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q7LHG5	1.8e-59	40.24	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	4.1e-59	39.94	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10401	1.2e-55	37.97	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc03g0059921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C402	8.0e-167	91.46	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DGR0	2.5e-136	72.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3CPI6	1.3e-127	77.63	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2U1P6A2	4.8e-119	61.36	Transposon Ty3-I Gag-Pol polyprotein OS=Artemisia annua OX=35608 GN=CTI12_AA1894...	[more]
A0A5B7BER3	1.4e-118	63.13	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_036800 PE=4 SV=1	[more]

BLAST of Cmc03g0059921 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.4e-15	36.89	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..171 e-value: 1.7E-66 score: 225.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 193..285 e-value: 4.7E-28 score: 99.0
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 246..329 e-value: 1.3E-25 score: 89.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 37..171 e-value: 5.1E-24 score: 85.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..219 score: 9.63408
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 1.7E-66 score: 225.6
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 14..327
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 14..327
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..184 e-value: 2.81914E-79 score: 237.879
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0059921.1	Cmc03g0059921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding