Cmc03g0059861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0059861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Tf2-6 polyprotein
Location	CMiso1.1chr03: 17144 .. 17755 (-)
RNA-Seq Expression	Cmc03g0059861
Synteny	Cmc03g0059861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTCTCAAAAATAGACCTCAAGTCAGGATACCACCAAATAAGAATGATTGATAAAGATATTCCGAAGACAGCTTTTCGCACTCACGAAGGCCACTACGAATTCCTTGTTATGCCGTTTGGGTTAACCAACGCCCCGGCCACTTTCCAAGCCTTAATGAATAGCATCTTTAGACCATTTATGAGAAAGTTTGTGCTGGTCTTCTTCGATGACATCCTGATCTACAGCAAGAATGAAAAAGACCACATAGAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACCCTCTTCGCCAATAAAAAGAAGTGCAACTTTGGCCAGAAGAAGGTAGAATACTTGGGACATATCATATCAGGAGAAGTGGAAGTAGACTCGGAGAAAATAAAAGTTGTTGCAGATTGGCCATGCCCAACAAATATAAGAGAAGTTCGGGGATTCCTTGGATTAACAGGCTACTACAGGAGATTTGTCCAACATTATGGATCAATAGCAGCCCCATTAACCCAACTACGCAAAAAAGGGGGGTTCAAATGGAACGAAGATGCGGAAGAATCGTTTCGAAAGCGGAAATCTGCAATGATGTCTCTACCAACGTTAGCCTGA

mRNA sequence

ATGGTATTCTCAAAAATAGACCTCAAGTCAGGATACCACCAAATAAGAATGATTGATAAAGATATTCCGAAGACAGCTTTTCGCACTCACGAAGGCCACTACGAATTCCTTGTTATGCCGTTTGGGTTAACCAACGCCCCGGCCACTTTCCAAGCCTTAATGAATAGCATCTTTAGACCATTTATGAGAAAGTTTGTGCTGGTCTTCTTCGATGACATCCTGATCTACAGCAAGAATGAAAAAGACCACATAGAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACCCTCTTCGCCAATAAAAAGAAGTGCAACTTTGGCCAGAAGAAGGTAGAATACTTGGGACATATCATATCAGGAGAAGTGGAAGTAGACTCGGAGAAAATAAAAGTTGTTGCAGATTGGCCATGCCCAACAAATATAAGAGAAGTTCGGGGATTCCTTGGATTAACAGGCTACTACAGGAGATTTGTCCAACATTATGGATCAATAGCAGCCCCATTAACCCAACTACGCAAAAAAGGGGGGTTCAAATGGAACGAAGATGCGGAAGAATCGTTTCGAAAGCGGAAATCTGCAATGATGTCTCTACCAACGTTAGCCTGA

Coding sequence (CDS)

ATGGTATTCTCAAAAATAGACCTCAAGTCAGGATACCACCAAATAAGAATGATTGATAAAGATATTCCGAAGACAGCTTTTCGCACTCACGAAGGCCACTACGAATTCCTTGTTATGCCGTTTGGGTTAACCAACGCCCCGGCCACTTTCCAAGCCTTAATGAATAGCATCTTTAGACCATTTATGAGAAAGTTTGTGCTGGTCTTCTTCGATGACATCCTGATCTACAGCAAGAATGAAAAAGACCACATAGAGCATATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACCCTCTTCGCCAATAAAAAGAAGTGCAACTTTGGCCAGAAGAAGGTAGAATACTTGGGACATATCATATCAGGAGAAGTGGAAGTAGACTCGGAGAAAATAAAAGTTGTTGCAGATTGGCCATGCCCAACAAATATAAGAGAAGTTCGGGGATTCCTTGGATTAACAGGCTACTACAGGAGATTTGTCCAACATTATGGATCAATAGCAGCCCCATTAACCCAACTACGCAAAAAAGGGGGGTTCAAATGGAACGAAGATGCGGAAGAATCGTTTCGAAAGCGGAAATCTGCAATGATGTCTCTACCAACGTTAGCCTGA

Protein sequence

MVFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFMRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIISGEVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFKWNEDAEESFRKRKSAMMSLPTLA

Homology

[Close]

BLAST of Cmc03g0059861 vs. NCBI nr
Match: TYK02195.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.1 bits (1032), Expect = 2.8e-108
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 723 VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 782

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 783 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 842

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 843 GEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 902

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 903 WNEDAEESFRKLKSAMMSLPTLA 925

[Close]

BLAST of Cmc03g0059861 vs. NCBI nr
Match: TYK23779.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.6e-108
Identity = 196/203 (96.55%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           +FSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPF
Sbjct: 633 IFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPF 692

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 693 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 752

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 753 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 812

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 813 WNEDAEESFRKLKSAMMSLPTLA 835

[Close]

BLAST of Cmc03g0059861 vs. NCBI nr
Match: KAA0033035.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK03450.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 4.7e-108
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAF THEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 63  VFSKIDLKSGYHQIRMIDKDIPKTAFHTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 122

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFF+DILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS
Sbjct: 123 LRKFVLVFFNDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 182

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 183 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 242

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 243 WNEDAEESFRKLKSAMMSLPTLA 265

[Close]

BLAST of Cmc03g0059861 vs. NCBI nr
Match: KAA0037097.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 195/203 (96.06%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 628 VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 687

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 688 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 747

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDS+KIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 748 GEGVEVDSKKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 807

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDA+ESFRK KSAMMSLPTLA
Sbjct: 808 WNEDAKESFRKLKSAMMSLPTLA 830

[Close]

BLAST of Cmc03g0059861 vs. NCBI nr
Match: KAA0032310.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 394.4 bits (1012), Expect = 5.8e-106
Identity = 194/203 (95.57%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKS YHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 313 VFSKIDLKSRYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 372

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           + KFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 373 LIKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 432

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 433 GEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 492

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WN+DAEESFRK KSAMMSLPTLA
Sbjct: 493 WNKDAEESFRKLKSAMMSLPTLA 515

[Close]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-43
Identity = 90/203 (44.33%), Postives = 127/203 (62.56%), Query Frame = 0


Query: 3   FSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFM 62
           F+ IDL  G+HQI M ++ I KTAF T  GHYE+L MPFGL NAPATFQ  MN+I RP +
Sbjct: 297 FTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLL 356

Query: 63  RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIISG 122
            K  LV+ DDI+I+S +  +H+  I+ VF  L    L     KC F +K+  +LGHI++ 
Sbjct: 357 NKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTP 416

Query: 123 E-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFKW 182
           + ++ +  K+K +  +P PT  +E+R FLGLTGYYR+F+ +Y  IA P+T   KK     
Sbjct: 417 DGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKID 476

Query: 183 NEDAE--ESFRKRKSAMMSLPTL 203
            +  E  E+F K K+ ++  P L
Sbjct: 477 TQKLEYIEAFEKLKALIIRDPIL 499

[Close]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 84/203 (41.38%), Postives = 127/203 (62.56%), Query Frame = 0


Query: 3   FSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFM 62
           F+ IDL  G+HQI M  + + KTAF T  GHYE+L MPFGL NAPATFQ  MN I RP +
Sbjct: 298 FTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLL 357

Query: 63  RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIISG 122
            K  LV+ DDI+++S +  +H++ +  VF  L K  L     KC F +++  +LGH+++ 
Sbjct: 358 NKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTP 417

Query: 123 E-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGG--F 182
           + ++ + EKI+ +  +P PT  +E++ FLGLTGYYR+F+ ++  IA P+T+  KK     
Sbjct: 418 DGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKID 477

Query: 183 KWNEDAEESFRKRKSAMMSLPTL 203
             N + + +F+K K  +   P L
Sbjct: 478 TTNPEYDSAFKKLKYLISEDPIL 500

[Close]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-40
Identity = 84/214 (39.25%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 3   FSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFM 62
           F+ +DL SG+HQI M + DIPKTAF T  G YEFL +PFGL NAPA FQ +++ I R  +
Sbjct: 214 FTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHI 273

Query: 63  RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIISG 122
            K   V+ DDI+++S++   H +++  V  +L K  L  N +K +F   +VE+LG+I++ 
Sbjct: 274 GKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTA 333

Query: 123 E-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRK------ 182
           + ++ D +K++ +++ P PT+++E++ FLG+T YYR+F+Q Y  +A PLT L +      
Sbjct: 334 DGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANI 393

Query: 183 ------KGGFKWNEDAEESFRKRKSAMMSLPTLA 204
                 K     +E A +SF   KS + S   LA
Sbjct: 394 KSSQSSKVPITLDETALQSFNDLKSILCSSEILA 427

[Close]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-37
Identity = 81/202 (40.10%), Postives = 120/202 (59.41%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           +F+ +DL SGYHQI M  KD  KTAF T  G YE+ VMPFGL NAP+TF   M   FR  
Sbjct: 707 IFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL 766

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
             +FV V+ DDILI+S++ ++H +H++ V   L+   L   KKKC F  ++ E+LG+ I 
Sbjct: 767 --RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIG 826

Query: 122 -GEVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
             ++     K   + D+P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +
Sbjct: 827 IQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQ 886

Query: 182 WNEDAEESFRKRKSAMMSLPTL 203
           W E  +++  K K+A+ + P L
Sbjct: 887 WTEKQDKAIEKLKAALCNSPVL 905

[Close]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 81/202 (40.10%), Postives = 119/202 (58.91%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           +F+ +DL SGYHQI M  KD  KTAF T  G YE+ VMPFGL NAP+TF   M   FR  
Sbjct: 681 IFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL 740

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
             +FV V+ DDILI+S++ ++H +H++ V   L+   L   KKKC F  ++ E+LG+ I 
Sbjct: 741 --RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIG 800

Query: 122 -GEVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
             ++     K   + D+P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +
Sbjct: 801 IQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQ 860

Query: 182 WNEDAEESFRKRKSAMMSLPTL 203
           W E  +++  K K A+ + P L
Sbjct: 861 WTEKQDKAIDKLKDALCNSPVL 879

[Close]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL
Match: A0A5D3BSP2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00980 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 723 VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 782

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 783 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 842

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 843 GEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 902

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 903 WNEDAEESFRKLKSAMMSLPTLA 925

[Close]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL
Match: A0A5D3DKH5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001060 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 196/203 (96.55%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           +FSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAP TFQALMNSIFRPF
Sbjct: 633 IFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPF 692

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 693 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 752

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 753 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 812

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 813 WNEDAEESFRKLKSAMMSLPTLA 835

[Close]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL
Match: A0A5A7SV50 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00550 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.3e-108
Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAF THEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 63  VFSKIDLKSGYHQIRMIDKDIPKTAFHTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 122

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFF+DILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS
Sbjct: 123 LRKFVLVFFNDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 182

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 183 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 242

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDAEESFRK KSAMMSLPTLA
Sbjct: 243 WNEDAEESFRKLKSAMMSLPTLA 265

[Close]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL
Match: A0A5A7T6B1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G002030 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 195/203 (96.06%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 628 VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 687

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           +RKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 688 LRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 747

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDS+KIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 748 GEGVEVDSKKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 807

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WNEDA+ESFRK KSAMMSLPTLA
Sbjct: 808 WNEDAKESFRKLKSAMMSLPTLA 830

[Close]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL
Match: A0A5A7SNE3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001630 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.8e-106
Identity = 194/203 (95.57%), Postives = 197/203 (97.04%), Query Frame = 0


Query: 2   VFSKIDLKSGYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 61
           VFSKIDLKS YHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF
Sbjct: 313 VFSKIDLKSRYHQIRMIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 372

Query: 62  MRKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 121
           + KFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKH+LFANKKKCNFGQKKVEYLGHIIS
Sbjct: 373 LIKFVLVFFDDILIYSKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIIS 432

Query: 122 GE-VEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFK 181
           GE VEVDSEKIK VADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQL KKGGFK
Sbjct: 433 GEGVEVDSEKIKAVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 492

Query: 182 WNEDAEESFRKRKSAMMSLPTLA 204
           WN+DAEESFRK KSAMMSLPTLA
Sbjct: 493 WNKDAEESFRKLKSAMMSLPTLA 515

[Close]

BLAST of Cmc03g0059861 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-29
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 84  IEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLG--HIISGE-VEVDSEKIKVVADWPCP 143
           + H+  V     +H  +AN+KKC FGQ ++ YLG  HIISGE V  D  K++ +  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 144 TNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLRKKGGFKWNEDAEESFRKRKSAMMSLP 203
            N  E+RGFLGLTGYYRRFV++YG I  PLT+L KK   KW E A  +F+  K A+ +LP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

The following BLAST results are available for this feature:

BLAST of Cmc03g0059861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02195.1	2.8e-108	97.04	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23779.1	3.6e-108	96.55	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033035.1	4.7e-108	97.04	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK03450.1 Transposon T...	[more]
KAA0037097.1	2.4e-107	96.06	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032310.1	5.8e-106	95.57	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0059861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.5e-43	44.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.0e-41	41.38	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	5.8e-40	39.25	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	4.6e-37	40.10	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.0e-36	40.10	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0059861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSP2	1.3e-108	97.04	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DKH5	1.8e-108	96.55	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SV50	2.3e-108	97.04	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T6B1	1.1e-107	96.06	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SNE3	2.8e-106	95.57	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc03g0059861 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.6e-29	50.41	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 13..45 e-value: 5.7E-52 score: 178.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..197
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..197
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..120 e-value: 2.06664E-66 score: 200.129
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..120 e-value: 1.0E-26 score: 93.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..120 score: 16.911226
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..120 e-value: 5.7E-52 score: 178.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 128..203 e-value: 5.2E-25 score: 89.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0059861.1	Cmc03g0059861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding