Cmc02g0058531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0058531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DEAD-box ATP-dependent RNA helicase 20-like
Location	CMiso1.1chr02: 24041167 .. 24043028 (-)
RNA-Seq Expression	Cmc02g0058531
Synteny	Cmc02g0058531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATACATACATTTGATTTCTTTGTAAACTTCCAAAAACAAAAACAAGATTTAAAAAAAAAAATCTTCAAAATTTGACTTGGTTTTGAAAACATTGGTAGAAAATGGATAGCAAAATATAGAAACTCATAAATGGAAGTTATGTTTAGAAGCTTACTTCTTAAGAACCAAAAACAAAATGTTTATCAAACGAGGCCTTGCGTGTTCATTTTCAAATTCTAATGAGTCGGCCAGCTGCTTTCCAGTTCCTGAATATAATTTGTGGCTTGGGTTCAGAGAAAAGTTCTGTCGTGCAATGTGCAGCATGATGATTGTTAATGTGAGACTGCTTGGTGTCGTCTCCCATTTGAAACTGCATATGCTTTTGGTTTCTTTCTTTGGACTAATGAGATCCTTTTGATTCCCCCCACTGTGACATAGGTTTAGTTTACATGCTACGTCTTTTGGGCTTTTCTTTTTGCATCCTCTGGGGTAGTGGTGGTGTCGTATGGTGAAGGAAGAAGGTTTGGTTTAAAAGAAATAGAGCCACCCCCTTTTCTTACTGGCTGCTAGTACATTATCAAGTCATGGCATGAATGTCATATGAACGCAAAGATGATGCTATTTTGAGGTTTATCAATGATGTTCTTTTCCAGGTTAAAGGGGAGGGAAATCCTATTCACTATACATTAAAGATTTGTAAATCCTCTGTACCAATGGGTCGGTAAAGGATAACGAGGAAGCAGAGACTTTGATGTTACTTAAAAAGATCATTTCATTGAGATGCGTGAGATAGTTATTTAACTTATTTTGGTCCTCTATAGTTATCCAAGTATTCAGTCGGTACCCATCCACAATTAAGGAGCTGGTTGTTTTTGCAGCCTGGTTGACTCATTCATTAATGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAGTTAAGGTGGGCACATTTATGTAGTAATGAATGTGTTATCATACTTTTGGTCTATCAGATCTTAAGAGTGCAGGGATAAGGTTTTCTGCAGTTTTATCCATGCCCCCATATTTTATTTTATCTAACTTCCATATTTTCTGTAGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTTCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGGCGAACGGGTCGTGCTGGTGCTAAGGGAACTGCATTCACATTCTTTACTCACGAGAATGCGAAACATGCCAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTACTTTAGCCTCATCTAGTGGCTTTGGAGGTAACTTTTCTCCTAATCCATCCTAAGTCAGAAGTGGATGATTACAATTTGAACATTATTGTTTCTTGTGTGTTAGGTTCTGGTGCTAAATTTCGCCCCCAAGGACACAGAGGCGGGTTTGGTCATCGAACAATGGTTTCAGGATCAAATGCAATCCCTCTTGGTTTGGCAACAAGACCTCGCTAGTTCCGGTCAACTCAAAAGGGAAGGGATATGCTAGATAAGTAATGTTTTTTGAGAAACGTGGACTATTTTTATTAAGTAATATAGTCTACTTATTTATAGAATTAGAGACCCAAGTGTTGTTTGGCATGAAAAATGGACACGTGGGTGTATATCTGTACATAAAACCAGAATTCTGGCAGTGACATTGCTGACGATGTTAGGATTAGGTTTGGTGGTTGTAGCCTGCAGGGTTGGTGAAGGTGATGATGACTGACATTTGAATCCTGGATATTTAGTATCAATGGAACACTATATGTGATATAAACGAATGCATAGTCGTGATTTCCTTGGGAGTGTTGAAAGAAAGAAAGCTATGGCTCTAAAGGAAC

mRNA sequence

GTAAAATACATACATTTGATTTCTTTGTAAACTTCCAAAAACAAAAACAAGATTTAAAAAAAAAAATCTTCAAAATTTGACTTGGTTTTGAAAACATTGGTAGAAAATGGATAGCAAAATATAGAAACTCATAAATGGAAGTTATGTTTAGAAGCTTACTTCTTAAGAACCAAAAACAAAATGTTTATCAAACGAGGCCTTGCGTGTTCATTTTCAAATTCTAATGAGTCGGCCAGCTGCTTTCCAGTTCCTGAATATAATTTGTGGCTTGGGTTCAGAGAAAAGTTCTGTCGTGCAATGTGCAGCATGATGATTGTTAATGTGAGACTGCTTGGTGTCGTCTCCCATTTGAAACTGCATATGCTTTTGGTTTCTTTCTTTGGACTAATGAGATCCTTTTGATTCCCCCCACTGTGACATAGGTTTAGTTTACATGCTACGTCTTTTGGGCTTTTCTTTTTGCATCCTCTGGGGTAGTGGTGGTGTCGTATGGTGAAGGAAGAAGGTTTGGTTTAAAAGAAATAGAGCCACCCCCTTTTCTTACTGGCTGCTAGTACATTATCAAGTCATGGCATGAATGTCATATGAACGCAAAGATGATGCTATTTTGAGGTTTATCAATGATGTTCTTTTCCAGGTTAAAGGGGAGGGAAATCCTATTCACTATACATTAAAGATTTGTAAATCCTCTGTACCAATGGGTCGGTAAAGGATAACGAGGAAGCAGAGACTTTGATGTTACTTAAAAAGATCATTTCATTGAGATGCGTGAGATAGTTATTTAACTTATTTTGGTCCTCTATAGTTATCCAAGTATTCAGTCGGTACCCATCCACAATTAAGGAGCTGGTTGTTTTTGCAGCCTGGTTGACTCATTCATTAATGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTTCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGGCGAACGGGTCGTGCTGGTGCTAAGGGAACTGCATTCACATTCTTTACTCACGAGAATGCGAAACATGCCAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTACTTTAGCCTCATCTAGTGGCTTTGGAGGTTCTGGTGCTAAATTTCGCCCCCAAGGACACAGAGGCGGGTTTGGTCATCGAACAATGGTTTCAGGATCAAATGCAATCCCTCTTGGTTTGGCAACAAGACCTCGCTAGTTCCGGTCAACTCAAAAGGGAAGGGATATGCTAGATAAGTAATGTTTTTTGAGAAACGTGGACTATTTTTATTAAGTAATATAGTCTACTTATTTATAGAATTAGAGACCCAAGTGTTGTTTGGCATGAAAAATGGACACGTGGGTGTATATCTGTACATAAAACCAGAATTCTGGCAGTGACATTGCTGACGATGTTAGGATTAGGTTTGGTGGTTGTAGCCTGCAGGGTTGGTGAAGGTGATGATGACTGACATTTGAATCCTGGATATTTAGTATCAATGGAACACTATATGTGATATAAACGAATGCATAGTCGTGATTTCCTTGGGAGTGTTGAAAGAAAGAAAGCTATGGCTCTAAAGGAAC

Coding sequence (CDS)

ATGCATTGTTGGTATGGAAGTCGTCGTGGTGACAGCTGCTACTTATCCCTGCAAAATGTGAAAGATATAAAATGTGTGATCAACTATGATTTTCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGGCGAACGGGTCGTGCTGGTGCTAAGGGAACTGCATTCACATTCTTTACTCACGAGAATGCGAAACATGCCAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTACTTTAGCCTCATCTAGTGGCTTTGGAGGTTCTGGTGCTAAATTTCGCCCCCAAGGACACAGAGGCGGGTTTGGTCATCGAACAATGGTTTCAGGATCAAATGCAATCCCTCTTGGTTTGGCAACAAGACCTCGCTAG

Protein sequence

MHCWYGSRRGDSCYLSLQNVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR

Homology

[Close]

BLAST of Cmc02g0058531 vs. NCBI nr
Match: KAA0057824.1 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of Cmc02g0058531 vs. NCBI nr
Match: XP_008464517.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo] >TYJ98508.1 DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of Cmc02g0058531 vs. NCBI nr
Match: XP_038879141.1 (DEAD-box ATP-dependent RNA helicase 20-like isoform X1 [Benincasa hispida])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 509 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 568

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALS LASSSGFGGS AKFRPQGHRGGFG+RTMVSGSNAIPLGLATRPR
Sbjct: 569 IVTPALSALASSSGFGGSSAKFRPQGHRGGFGNRTMVSGSNAIPLGLATRPR 620

[Close]

BLAST of Cmc02g0058531 vs. NCBI nr
Match: XP_004138092.1 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis sativus] >KGN63546.2 hypothetical protein Csa_013269 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINFDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALS LASSSGFGGSGAKFR QGHRGGFG+RTMVSGSNAIPLGL TRPR
Sbjct: 571 IVTPALSALASSSGFGGSGAKFRSQGHRGGFGNRTMVSGSNAIPLGLTTRPR 622

[Close]

BLAST of Cmc02g0058531 vs. NCBI nr
Match: XP_022135421.1 (DEAD-box ATP-dependent RNA helicase 30 [Momordica charantia])

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-47
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ
Sbjct: 507 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKHARELMKILREAGQ 566

Query: 79  IVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           +VTPALS LAS+SGFGG GAKFRP QG+RGG+G+RT+VSGSNAIP+G ATRPR
Sbjct: 567 VVTPALSALASASGFGGPGAKFRPQQGYRGGYGNRTLVSGSNAIPIG-ATRPR 618

[Close]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot
Match: Q8W4R3 (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 5.2e-34
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQ 534

Query: 79  IVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHRTMVSGSNAIPLG 125
           +V P LS L  +S SG+GGSG    FRP+  G  GGFG +   S SN +P G
Sbjct: 535 VVPPTLSALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHG 586

[Close]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot
Match: Q5N7W4 (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 6.3e-32
Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVIN+DFP++LEDY+HRIGRTGRAGA GTAFTFFT  NAK +R+L+KILREAGQ
Sbjct: 561 DVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILREAGQ 620

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPL 124
           +V PAL ++A S+   G G  FR +G RGGFG+R   SGSN+IP+
Sbjct: 621 VVNPALESMAKSASSMG-GGNFRSRG-RGGFGNR---SGSNSIPI 660

[Close]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot
Match: Q5B0J9 (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-25
Identity = 62/107 (57.94%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +V+DI  VINYD+P++ EDYVHRIGRTGRAGAKGTA TFFT +NAK ARDL+ IL EA Q
Sbjct: 452 DVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQ 511

Query: 79  IVTPALSTLASSSGFGGSGAKF-RPQGHRGGFGHRTMVSGSNAIPLG 125
            + P L+ +   SG GG G  + R  G  GG G     + SNA PLG
Sbjct: 512 QIDPRLAEMVRYSGGGGHGGGYGRWGGRGGGRGRGGNFTASNAAPLG 558

[Close]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot
Match: Q4X195 (ATP-dependent RNA helicase dbp2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=dbp2 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-25
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +V+DI  V+NYD+P++ EDY+HRIGRTGRAGAKGTA TFFT EN+K ARDL+ IL EA Q
Sbjct: 433 DVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLVTILTEAKQ 492

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHR----GGFGHRTMVSGSNAIPLGLATR 129
            + P L+ +A  SG GG    +   G R    GG G     + SNA PLG A R
Sbjct: 493 QIDPRLAEMARYSGGGGGHGGYGRWGGRGGRGGGRGRGGTYTASNAAPLGNARR 546

[Close]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot
Match: G0SFM2 (ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=DBP2 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-25
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +V++I  VINYD+P++ EDY+HRIGRTGRAGAKGTA TFFT ENAK ARDL+ +L+EA Q
Sbjct: 443 DVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENAKQARDLVSVLQEAKQ 502

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGG---FGHRTMV-SGSNAIPL 124
            V P L  +A  SG GGS      +G  GG    GHR+   SG+NA+P+
Sbjct: 503 HVDPRLLEMARYSGGGGSSRYGGYRGRGGGGYRGGHRSAAHSGANAVPV 551

[Close]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL
Match: A0A5A7URR2 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001090 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL
Match: A0A5D3BJX7 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001110 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL
Match: A0A1S3CLM7 (DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502377 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 511 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 570

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR
Sbjct: 571 IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 622

[Close]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL
Match: A0A0A0LP25 (Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G004090 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           NVKDIKCVIN+DFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ
Sbjct: 20  NVKDIKCVINFDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 79

Query: 79  IVTPALSTLASSSGFGGSGAKFRPQGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           IVTPALS LASSSGFGGSGAKFR QGHRGGFG+RTMVSGSNAIPLGL TRPR
Sbjct: 80  IVTPALSALASSSGFGGSGAKFRSQGHRGGFGNRTMVSGSNAIPLGLTTRPR 131

[Close]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL
Match: A0A6J1C0Q1 (DEAD-box ATP-dependent RNA helicase 30 OS=Momordica charantia OX=3673 GN=LOC111007379 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ
Sbjct: 507 DVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKHARELMKILREAGQ 566

Query: 79  IVTPALSTLASSSGFGGSGAKFRP-QGHRGGFGHRTMVSGSNAIPLGLATRPR 131
           +VTPALS LAS+SGFGG GAKFRP QG+RGG+G+RT+VSGSNAIP+G ATRPR
Sbjct: 567 VVTPALSALASASGFGGPGAKFRPQQGYRGGYGNRTLVSGSNAIPIG-ATRPR 618

[Close]

BLAST of Cmc02g0058531 vs. TAIR 10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 3.7e-35
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDIKCV+NYDFP++LEDY+HRIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQ 534

Query: 79  IVTPALSTL--ASSSGFGGSGA--KFRPQ--GHRGGFGHRTMVSGSNAIPLG 125
           +V P LS L  +S SG+GGSG    FRP+  G  GGFG +   S SN +P G
Sbjct: 535 VVPPTLSALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHG 586

[Close]

BLAST of Cmc02g0058531 vs. TAIR 10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-24
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKD+K VINYDFP SLEDYVHRIGRTGRAGAKGTA+TFFT  NA+ A++L  IL+EAGQ
Sbjct: 409 DVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQ 468

Query: 79  IVTPALSTLASSS-----GFGGSGAKFRPQGHRGGF 110
            V+P L+++  S+     G GG    FR +G R G+
Sbjct: 469 KVSPELASMGRSTAPPPPGLGG----FRDRGSRRGW 500

[Close]

BLAST of Cmc02g0058531 vs. TAIR 10
Match: AT5G14610.1 (DEAD box RNA helicase family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G A+TFF  ++AKHA DLIKIL  A Q
Sbjct: 538 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQ 597

Query: 79  IVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG 111
            V P +  +A+    GG   KFR          G RGG+G
Sbjct: 598 KVPPQVREMATRG--GGGMNKFRRWGTPSSGGGGGRGGYG 635

[Close]

BLAST of Cmc02g0058531 vs. TAIR 10
Match: AT5G14610.2 (DEAD box RNA helicase family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 19  NVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQ 78
           +VKDI+ V+NYDFP+ +EDYVHRIGRTGRAGA G A+TFF  ++AKHA DLIKIL  A Q
Sbjct: 470 DVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQ 529

Query: 79  IVTPALSTLASSSGFGGSGAKFR--------PQGHRGGFG 111
            V P +  +A+    GG   KFR          G RGG+G
Sbjct: 530 KVPPQVREMATRG--GGGMNKFRRWGTPSSGGGGGRGGYG 567

[Close]

BLAST of Cmc02g0058531 vs. TAIR 10
Match: AT3G06480.1 (DEAD box RNA helicase family protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 63/144 (43.75%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 8   RRGDSCYLSLQNV-------KDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTH 67
           R G SC L   +V       KDI+ VINYDFP+ +EDYVHRIGRTGRAGA G AFTFFT 
Sbjct: 726 RSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTE 785

Query: 68  ENAKHARDLIKILREAGQIVTPALSTLA-------------------------------- 113
           ++ K+A DLIK+L  A Q V P +  +A                                
Sbjct: 786 QDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYSQDRRGMVNRFDSGGGGTRWD 845

The following BLAST results are available for this feature:

BLAST of Cmc02g0058531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057824.1	1.0e-55	99.11	DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008464517.1	1.0e-55	99.11	PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo] >TYJ...	[more]
XP_038879141.1	1.3e-53	96.43	DEAD-box ATP-dependent RNA helicase 20-like isoform X1 [Benincasa hispida]	[more]
XP_004138092.1	1.8e-52	94.64	DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis sativus] >KGN63546.2 ...	[more]
XP_022135421.1	6.7e-47	86.73	DEAD-box ATP-dependent RNA helicase 30 [Momordica charantia]	[more]

BLAST of Cmc02g0058531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4R3	5.2e-34	66.07	DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 P...	[more]
Q5N7W4	6.3e-32	67.62	DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5B0J9	5.7e-25	57.94	ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38...	[more]
Q4X195	9.7e-25	54.39	ATP-dependent RNA helicase dbp2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / ...	[more]
G0SFM2	9.7e-25	56.88	ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CB...	[more]

BLAST of Cmc02g0058531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URR2	5.0e-56	99.11	DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A5D3BJX7	5.0e-56	99.11	DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3CLM7	5.0e-56	99.11	DEAD-box ATP-dependent RNA helicase 20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LP25	2.3e-53	95.54	Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1C0Q1	3.2e-47	86.73	DEAD-box ATP-dependent RNA helicase 30 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Cmc02g0058531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63120.2	3.7e-35	66.07	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G55150.1	1.3e-24	60.42	DEA(D/H)-box RNA helicase family protein	[more]
AT5G14610.1	1.0e-21	55.00	DEAD box RNA helicase family protein	[more]
AT5G14610.2	1.0e-21	55.00	DEAD box RNA helicase family protein	[more]
AT3G06480.1	1.4e-21	43.75	DEAD box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 18..91 e-value: 8.4E-24 score: 85.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 19..99
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 19..49 e-value: 5.8E-9 score: 36.3
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 19..88 score: 10.100618
None	No IPR available	PANTHER	PTHR47958:SF66	DEAD-BOX ATP-DEPENDENT RNA HELICASE 40	coord: 20..98
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 20..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0058531.1	Cmc02g0058531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003724	RNA helicase activity