Cmc02g0058081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0058081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr02: 23750250 .. 23750954 (-)
RNA-Seq Expression	Cmc02g0058081
Synteny	Cmc02g0058081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGACCTGCAAAAGCTCCGTATGAGGCCCCGGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCTCTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAATATTTTTCAAAGTTAGACTTGCAGTCGGGGTACTACCAAGTAAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTATCTAGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAAAAATTAAAAGAGAATCAGCTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATGAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAGTTGGAATGGAAGAAAGGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTTGA

mRNA sequence

ATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGACCTGCAAAAGCTCCGTATGAGGCCCCGGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCTCTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAATATTTTTCAAAGTTAGACTTGCAGTCGGGGTACTACCAAGTAAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTATCTAGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAAAAATTAAAAGAGAATCAGCTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATGAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAGTTGGAATGGAAGAAAGGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTTGA

Coding sequence (CDS)

ATGGCGCCTCCGGAGTTAGCTGAACTTCGGAAACAGTTAGATGAGTTACTGAATGCAGGATTCATTAGACCTGCAAAAGCTCCGTATGAGGCCCCGGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGCCCTGAATAAACTCACGGTTCGCAACAAGTATCCTCTTCCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAATATTTTTCAAAGTTAGACTTGCAGTCGGGGTACTACCAAGTAAGAATTGCAGAGGGAGATGAGCCGAAGACAACCTGTGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTGTACGTTGATGAACCAGGCCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTATCTAGATGATATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTGCAAAAGGTTTTTCAAAAATTAAAAGAGAATCAGCTGTATGTCAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATGAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAGTTGGAATGGAAGAAAGGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTTGA

Protein sequence

MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR

Homology

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BLAST of Cmc02g0058081 vs. NCBI nr
Match: KAA0057857.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 480.3 bits (1235), Expect = 9.3e-132
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK
Sbjct: 52  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 111

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 112 YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 171

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 172 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 231

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 232 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 285

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BLAST of Cmc02g0058081 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 469.9 bits (1208), Expect = 1.3e-128
Identity = 228/234 (97.44%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQKKKDGSLRLCIDYRALNKLTVRNK
Sbjct: 644 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 703

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 704 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 763

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 764 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 823

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 824 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

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BLAST of Cmc02g0058081 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 2.8e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 670 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 729

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 730 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 789

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 790 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 849

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 850 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 903

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BLAST of Cmc02g0058081 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 2.8e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 674 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 733

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 734 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 793

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 794 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 853

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 854 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

[Close]

BLAST of Cmc02g0058081 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 2.8e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 674 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 733

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 734 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 793

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 794 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 853

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 854 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

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BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 105/227 (46.26%), Postives = 147/227 (64.76%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 67
           E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I 
Sbjct: 611 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 670

Query: 68  DLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 127
           +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ VMPFGL NAP+TF 
Sbjct: 671 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 730

Query: 128 TLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 187
             M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E
Sbjct: 731 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 790

Query: 188 RMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
              FLG+ I   ++   + K AAIRD+  PK+V + + FLG+ NYYR
Sbjct: 791 ETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 835

[Close]

BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 105/227 (46.26%), Postives = 147/227 (64.76%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIIT 67
           E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I 
Sbjct: 637 EINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRID 696

Query: 68  DLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFC 127
           +L  R+  A+ F+ LDL SGY+Q+ +   D  KT  VT  G +E+ VMPFGL NAP+TF 
Sbjct: 697 NLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFA 756

Query: 128 TLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQE 187
             M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E
Sbjct: 757 RYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASE 816

Query: 188 RMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
              FLG+ I   ++   + K AAIRD+  PK+V + + FLG+ NYYR
Sbjct: 817 ETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 861

[Close]

BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-47
Identity = 90/128 (70.31%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 42  SLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKT 101
           SLR+CIDYRAL K+T++NKYP+P + DLFDRL  A +F+KLDL+SGY+QVRIA+GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 TCVTRYGAFEFLVMPFGLTNAPATFCTLMNQAFHEYLDKFVVVYLDDIVV---YSTTMEE 161
           TCVTRYG+FEF VMPFGLTNA ATFC LMN   +EYLD FVVVYLDD+VV   YS ++ E
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124

Query: 162 HRDHLQKV 167
           H  HL+ V
Sbjct: 125 HIKHLRVV 132

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BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.6e-47
Identity = 92/232 (39.66%), Postives = 143/232 (61.64%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYP 67
           E+  Q+ E+LN G IR + +PY +P  +  KK D S     R+ IDYR LN++T+ ++YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA 127
           +P + ++  +L   +YF+ +DL  G++Q+ + E    KT   T+ G +E+L MPFGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKC 187
           PATF   MN      L+K  +VYLDDI+++ST++ EH + +Q VF KL +  L ++ +KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 SFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
            F ++  NFLGH++    +     K+ AI  + +P    E+R+FLGL  YYR
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

[Close]

BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.3e-47
Identity = 91/232 (39.22%), Postives = 144/232 (62.07%), Query Frame = 0


Query: 8   ELRKQLDELLNAGFIRPAKAPYEAPV-LFQKKKDGS----LRLCIDYRALNKLTVRNKYP 67
           E+  Q+ ++LN G IR + +PY +P+ +  KK+D S     R+ IDYR LN++TV +++P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281

Query: 68  LPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNA 127
           +P + ++  +L    YF+ +DL  G++Q+ +      KT   T++G +E+L MPFGL NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341

Query: 128 PATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKC 187
           PATF   MN      L+K  +VYLDDI+V+ST+++EH   L  VF+KL +  L ++ +KC
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401

Query: 188 SFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
            F ++   FLGHV+    +     KI AI+ + +P    E+++FLGL  YYR
Sbjct: 402 EFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

[Close]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL
Match: A0A5A7UT24 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001510 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 4.5e-132
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK
Sbjct: 52  MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 111

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 112 YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 171

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 172 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 231

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 232 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 285

[Close]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 6.1e-129
Identity = 228/234 (97.44%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQKKKDGSLRLCIDYRALNKLTVRNK
Sbjct: 644 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 703

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 704 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 763

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 764 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 823

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 824 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

[Close]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 674 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 733

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 734 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 793

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 794 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 853

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 854 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

[Close]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 674 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 733

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 734 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 793

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 794 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 853

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 854 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

[Close]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 227/234 (97.01%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MAPPELAELRKQLDELLNAGFIRPAKAPYEAPVLFQKKKDGSLRLCIDYRALNKLTVRNK 60
           MAPPELAELRKQLDELLNAGFIRPAKAPY APVLFQ+KKDGSLRLCIDYRALNKLTVRNK
Sbjct: 674 MAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNK 733

Query: 61  YPLPIITDLFDRLHGAKYFSKLDLQSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 120
           YPLPIITDLFDRLHGAKYFSKLDL+SGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT
Sbjct: 734 YPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLT 793

Query: 121 NAPATFCTLMNQAFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 180
           NAPATFCTLMNQ FHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE
Sbjct: 794 NAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKRE 853

Query: 181 KCSFAQERMNFLGHVIECGRVGMEERKIAAIRDWAMPKSVSELRSFLGLANYYR 235
           KCSFAQER+NFLGHVIECGR+GMEE KIAAIRDWAMPKSVSELRSFLGLANYYR
Sbjct: 854 KCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

The following BLAST results are available for this feature:

BLAST of Cmc02g0058081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057857.1	9.3e-132	100.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07954.1	1.3e-128	97.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	2.8e-128	97.01	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	2.8e-128	97.01	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	2.8e-128	97.01	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0058081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.2e-54	46.26	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.2e-54	46.26	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	2.5e-47	70.31	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P20825	5.6e-47	39.66	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.3e-47	39.22	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT24	4.5e-132	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3C9P8	6.1e-129	97.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	1.4e-128	97.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.4e-128	97.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.4e-128	97.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Cmc02g0058081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 7.4E-84 score: 282.3
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 10..234
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..234
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 2.82067E-94 score: 271.776
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 205..234 e-value: 7.6E-8 score: 34.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 7.4E-84 score: 282.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 37..195 e-value: 2.0E-31 score: 109.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 14.697333
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0058081.1	Cmc02g0058081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding