Cmc02g0056541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0056541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LYR motif-containing protein 4
Location	CMiso1.1chr02: 22886703 .. 22886975 (-)
RNA-Seq Expression	Cmc02g0056541
Synteny	Cmc02g0056541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCCAACAAGATCGGAGGCTCTTTCGCTTCTCCGCTCTCTGATCCGTACATCCCGTCAGTTCTGCGATTACAACATCAGAGAGTACGCCAAACGACGCGTCGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGACCCTTCATCCATTTCCTCCGCCTACGCCGATGGAAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCAGCCATTTACTCCCTCTATGCGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA

mRNA sequence

ATGGCGGCTCCAACAAGATCGGAGGCTCTTTCGCTTCTCCGCTCTCTGATCCGTACATCCCGTCAGTTCTGCGATTACAACATCAGAGAGTACGCCAAACGACGCGTCGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGACCCTTCATCCATTTCCTCCGCCTACGCCGATGGAAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCAGCCATTTACTCCCTCTATGCGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA

Coding sequence (CDS)

ATGGCGGCTCCAACAAGATCGGAGGCTCTTTCGCTTCTCCGCTCTCTGATCCGTACATCCCGTCAGTTCTGCGATTACAACATCAGAGAGTACGCCAAACGACGCGTCGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGACCCTTCATCCATTTCCTCCGCCTACGCCGATGGAAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCAGCCATTTACTCCCTCTATGCGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA

Protein sequence

MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSAIYSLYAPKVKSIMEAHRIN

Homology

[Close]

BLAST of Cmc02g0056541 vs. NCBI nr
Match: XP_008453246.1 (PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Cmc02g0056541 vs. NCBI nr
Match: XP_011660289.1 (LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 8.2e-36
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Cmc02g0056541 vs. NCBI nr
Match: XP_038879775.1 (LYR motif-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          M APTRSEALSLLRS +RT+R FCDYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MVAPTRSEALSLLRSFLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSA+YSLYAPKVKSIME HR N
Sbjct: 61 AQLEVAKRQSAVYSLYAPKVKSIMEPHRTN 90

[Close]

BLAST of Cmc02g0056541 vs. NCBI nr
Match: XP_022932898.1 (LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-containing protein 4 [Cucurbita maxima] >XP_023531294.1 LYR motif-containing protein 4 [Cucurbita pepo subsp. pepo] >KAG7021536.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQS +YSL++PKVKSIMEAH  N
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Cmc02g0056541 vs. NCBI nr
Match: XP_022134602.1 (LYR motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 8.5e-33
Identity = 73/90 (81.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTR+EALSLLRSL+RT+R FCDYN+REYAKRR VDGFRHNRNLSDPSSISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVA+RQS +YS +APKVKSIM+ H  N
Sbjct: 61 AQLEVARRQSTVYSFFAPKVKSIMDPHPAN 90

[Close]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAA +R++ L L R+L+R S++F  YN R YA RR+ D FR N+N++D   I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIME 86
          A LEV +RQ  I  +YA + K I+E
Sbjct: 61 ANLEVIQRQGTIDHMYATE-KLIIE 84

[Close]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-10
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAA +R++ LSL R+++R S++F  YN R YA RR+ D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQSAIYSLYA 78
            L V +RQ  I  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

[Close]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAA +R++ L L R+++R S+ F  YN R YA RR+ D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAIYSLYA 78
            LE+ +RQ  I  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-09
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAA T ++ LSL R L++ S +F  YN R YA RRV D FR NR++ DP  +      G+
Sbjct: 1  MAACT-AQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGR 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIME 86
            L++ +RQ AI  +Y P  K+I+E
Sbjct: 61 DNLDMIRRQVAIGKMY-PTQKTIVE 83

[Close]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-09
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAA +R++ L L R+++R S++F  YN R YA RR+ D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAIYSLYA 78
            L + +RQ  I  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

[Close]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL
Match: A0A0A0LPH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQSA+YSLY PKVKSIMEAHRIN
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL
Match: A0A6J1IC29 (LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.2e-34
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQS +YSL++PKVKSIMEAH  N
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL
Match: A0A6J1F322 (LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.2e-34
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 91
          AQLEVAKRQS +YSL++PKVKSIMEAH  N
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Cmc02g0056541 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-21
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 7  SEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGKAQLEVA 66
          SE LSL R+L+R  RQF DYNIREY+KRR +DGFR N+NL+DPS ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAIYSLYAPKVKSIME 86
          +R   +Y  Y PK K+IME
Sbjct: 65 ERVLKVYLAYPPKTKNIME 83

The following BLAST results are available for this feature:

BLAST of Cmc02g0056541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453246.1	7.1e-40	100.00	PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif...	[more]
XP_011660289.1	8.2e-36	91.11	LYR motif-containing protein 4 [Cucumis sativus]	[more]
XP_038879775.1	1.8e-35	88.89	LYR motif-containing protein 4-like [Benincasa hispida]	[more]
XP_022932898.1	1.7e-33	84.44	LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-co...	[more]
XP_022134602.1	8.5e-33	81.11	LYR motif-containing protein 4-like [Momordica charantia]	[more]

BLAST of Cmc02g0056541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5FZA8	7.2e-11	44.71	LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=...	[more]
Q9HD34	6.1e-10	44.16	LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1	[more]
Q8K215	8.0e-10	42.86	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
B5XD90	5.2e-09	43.53	LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1	[more]
Q0VCG0	8.8e-09	40.26	LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1	[more]

BLAST of Cmc02g0056541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UTC8	3.5e-40	100.00	LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BV74	3.5e-40	100.00	LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1	[more]
A0A0A0LPH2	4.0e-36	91.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1	[more]
A0A6J1IC29	8.2e-34	84.44	LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 ...	[more]
A0A6J1F322	8.2e-34	84.44	LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=...	[more]

BLAST of Cmc02g0056541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	6.1e-21	60.76	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 6.7E-18 score: 64.5
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 8..76 e-value: 8.16403E-29 score: 96.4345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0056541.1	Cmc02g0056541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly