Cmc02g0056121 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0056121
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 22573764 .. 22577404 (-)
RNA-Seq Expression	Cmc02g0056121
Synteny	Cmc02g0056121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCTTTTTATCTTTGTTTGGCTGCCGATAAATGGAATCTTAGGAAAGAGTAAGGGGAAGAAACTTAAATCTCGGCTGTTTCTTGTGAAAATGGTTGTTTTGATTTTGGTTGTATTCTAGGCTGCTTATGACATTCAACCAGGGGAGTTGATTCTCCCAAAACAATGTTAAGTTGAACGTCCGTTGTTTATTTTCCATGCCATGTAATCAACTATAAGATGATTGATGTATGATTGTTCCTTTTCTTTGCATGCAATCTCTTCCTTTTAAGCGTTTGACAATATTTGTTGACAGCTTAATTAGAACTGGAAGGATCAACCTTAGCAGAATCTATAGGTACCAATCAGGAAGTTTGGTGATTTGTTCATCATTAGAGAATAGATGAGGAACGAATTTTCTGATTTGGTGGTCGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGCGTGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTAGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAGTTGCCTGAGCTTGTTGTTTTTCTCCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACATCGCGTCAAAAGTGCTTTAAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATATAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGATTCGACAATTTCAAGTATTGAATCAACACAGACCCTTGAGGAAAACTTTAACGAAGTTTACGAGAAGCAAAAGGTTCATTCTGATGCAATAGATGTCCCTTCTGAGGTTCCCCGTAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTGAGAGCGACCTTAGCTTAGCATTCTTCCTGAGATCCTTTTTAACTAGAAACTTAATTTGATAGTTTGCTACCTTAGTAGGTTACAGGTAAAAAGGCAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAGAAACAAAGGAAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAAAAATTTTCGCAACTCCGGTTTATCACAAAGCACAATAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCATGACTGTACCATGGCCGAATACAAGGACTATACACCTGAAAACGAAACGGGACTATACAGTAGCCATTGTTCCTCTGCAGGTGATCCTAGTTTGAACTCAGTGAGAAGACCCTCGATGTCGTCTTATTTGGGCAGTGGATCTCTTCGGTCGAATAGCAGCACCAACAGCTCACATTCTTTTGCTTTTCCAATGTACTTTTGCTTCTCTTAACATTATCTCATTCTACTTCATTAATTGAAATTGAAACATATAGCTTATGATCTTAGCCTCTTCTTGAATTCACAGTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGCAACTATGGAGACTATGTTTGCCCTGCTGTAATTTCTGAGCCTCTCATTGCCCAACCTTTCAGTGCTCTTGATTGTTTTCACTCAGATTCATTATCATTTGTATGATATATGTAGAACTGCAGTGATCCCACCATTTGTAGTTTATTTTATAGCATAAAAATTTAGTGTTTCTGAATACATTATTTACATTGTGTCTCACATTTAGCCTCATATGTTAGCTTAGACAATTACCAATCAAGAAAATAAGACATTTGAGAATTTTTAGGAGTTTCTAACAAACCACTAAACTCAAAAGTTGAGAAGGAAAGCTCCACTGGAAGGTTACACCCAGCTCAATGGTTAAAAAGTTGAATCTAAGATCATATTTCTAACTTTTAATAGCTTTAAGCTTGAATCAATTATTAGAAAATTTTCAAGTATTATAGCAATAAAAAATACATTCCCTTCAAAATTTAACATGTAATTAAATGGTATATAATTTTATTTGATGGACCTCATACCATTCTTAAATGTCACCGATGGGTTAGCTTAGAAGTATGGAAGATTTTTCGTAGTACTATAAATTTTCTCTCTAGTAGCAATAAAATAATATCTACCAAATTTAAATATTTTCTCATTTCATATTAATAACCGACGTGTTAGACCTCACCTCCTTGTTAGTAGTATGGAGCCCACACATGAAGAGATCGTTAAAGAGTAAATTGAAGACATAAGGTAGTAATATGATGCTTATTTAACCTATGGATGAACTCCAATAAAAGTGGTCCTACTACACAAACTTTAGATATTACCAAGTAAGCTACAGTTACTTGTGAAACTTTCTACCACATTCTTGATCCCTTATTGCTCAAATTTGTAATCTCAATGGCTTCTGACTTTTGCACATAAAATAATGATATAGTTGAAATCAGGTCAAGAAGAAGAGATCATGGGAATAGTAAGAGATAAGATCCTCCTCAACTATAATTAGATTGCTGGAAGTTTCTAGAGCTCTTGTGAGACAAATGGTCGAGTTGATAGATAGCTCAGTCCAATCCTAATCCAACTTGGGAGCCTTAAGCCAAATGGTGCCCACTTTTAGTGTGTATTAAGAGTCTTGAAACTGAGCATCTAATGATGCTCCATTGGACCATTTAATAAGCAGTGGAAACCACTGTTGGCCACACAAACAAAAAAGCATTAGCTTGGGGAAGTAAGTGCCAAATCTGTCTGTTTAGGTAATACTATCTCATTCTTAGCTCACACCATCCATTTCTACTATTAAATCCCCCCACCATTGCCACTATGTTTTGGTTAAGTCTAAACAATGCAGGTGACACTTTGTTTTGCAGCATTCAGAAACGTCGTCGAGCAGGCAGGGGGCGGGTTACAGTTAAGGACCACCATAAGCCACCACCATGTGCCTAGTCCCAATCGAAAGCGCGATCCGGTTGGAACCATGAATGTAGAATTCTTATGTGAGGCCTTCTTAGAAGGAAGACAATGAAAATGACTTTACACAAGTCACGTCTCACTTGATCATGCATGCCAATTCTCTCCATCTTAGGACCATTGTGTAGCAGAGTACTTTACAATCAAATCTCTATCACCACTACAAGCAAACCAACAACCACAGATATGGAAGCAACAGTTCTCAAACGTTTGACATTTTACTGAACACAATTTGCTATGTTATGTCAACAAGCTCCCATATCGAAAAACGGCCCAAAACTTATCAACCGTCTGTGGATACAGGAGATAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGATTGAAACTGAAATGATATGCTAGGACCACAGAAGGGCATGTGATATTTGAGTTAGCTGAGACAAAAGGGGGGGTTTTGGTTAGCAATGTTAATCAAATAGGAAGTGACAGATGGGCCTTTAGGGGCAGAAGAAGAAAGGGCAAGGCTAATCAGTGTTTTCATTATCAAATAAATGAAAAGCTTACATGTGAGCTGTGATGCTTCAATTCACAGCTCAAGGACCCATCTTTTTCAAGTTTTAATTAAATATATTTTTTATGTTGAAAAATTCAATGAAATATGTGGAG

mRNA sequence

GCTCTTTTTATCTTTGTTTGGCTGCCGATAAATGGAATCTTAGGAAAGAGTAAGGGGAAGAAACTTAAATCTCGGCTGTTTCTTGTGAAAATGGTTGTTTTGATTTTGGTTGTATTCTAGGCTGCTTATGACATTCAACCAGGGGAGTTGATTCTCCCAAAACAATGTTAAGTTGAACGTCCGTTGTTTATTTTCCATGCCATGTAATCAACTATAAGATGATTGATGTATGATTGTTCCTTTTCTTTGCATGCAATCTCTTCCTTTTAAGCGTTTGACAATATTTGTTGACAGCTTAATTAGAACTGGAAGGATCAACCTTAGCAGAATCTATAGGTACCAATCAGGAAGTTTGGTGATTTGTTCATCATTAGAGAATAGATGAGGAACGAATTTTCTGATTTGGTGGTCGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGCGTGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTAGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAGTTGCCTGAGCTTGTTGTTTTTCTCCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACATCGCGTCAAAAGTGCTTTAAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATATAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGATTCGACAATTTCAAGTATTGAATCAACACAGACCCTTGAGGAAAACTTTAACGAAGTTTACGAGAAGCAAAAGGTTCATTCTGATGCAATAGATGTCCCTTCTGAGGTTCCCCGTAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTTACAGGTAAAAAGGCAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAGAAACAAAGGAAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAAAAATTTTCGCAACTCCGGTTTATCACAAAGCACAATAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCATGACTGTACCATGGCCGAATACAAGGACTATACACCTGAAAACGAAACGGGACTATACAGTAGCCATTGTTCCTCTGCAGGTGATCCTAGTTTGAACTCAGTGAGAAGACCCTCGATGTCGTCTTATTTGGGCAGTGGATCTCTTCGGTCGAATAGCAGCACCAACAGCTCACATTCTTTTGCTTTTCCAATTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGCAACTATGGAGACTATGTTTGCCCTGCTGTAATTTCTGAGCCTCTCATTGCCCAACCTTTCAGTGCTCTTGATTGTTTTCACTCAGATTCATTATCATTTGTATGATATATGTAGAACTGCAGTGATCCCACCATTTGTAGTTTATTTTATAGCATAAAAATTTAGTGTTTCTGAATACATTATTTACATTGTGTCTCACATTTAGCCTCATATGTTAGCTTAGACAATTACCAATCAAGAAAATAAGACATTTGAGAATTTTTAGGAGTTTCTAACAAACCACTAAACTCAAAAGTTGAGAAGGAAAGCTCCACTGGAAGGTTACACCCAGCTCAATGGTTAAAAAGTTGAATCTAAGATCATATTTCTAACTTTTAATAGCTTTAAGCTTGAATCAATTATTAGAAAATTTTCAAGTATTATAGCAATAAAAAATACATTCCCTTCAAAATTTAACATGTAATTAAATGGTATATAATTTTATTTGATGGACCTCATACCATTCTTAAATGTCACCGATGGGTTAGCTTAGAAGTATGGAAGATTTTTCGTAGTACTATAAATTTTCTCTCTAGTAGCAATAAAATAATATCTACCAAATTTAAATATTTTCTCATTTCATATTAATAACCGACGTGTTAGACCTCACCTCCTTGTTAGTAGTATGGAGCCCACACATGAAGAGATCGTTAAAGAGTAAATTGAAGACATAAGGTAGTAATATGATGCTTATTTAACCTATGGATGAACTCCAATAAAAGTGGTCCTACTACACAAACTTTAGATATTACCAAGTAAGCTACAGTTACTTGTGAAACTTTCTACCACATTCTTGATCCCTTATTGCTCAAATTTGTAATCTCAATGGCTTCTGACTTTTGCACATAAAATAATGATATAGTTGAAATCAGGTCAAGAAGAAGAGATCATGGGAATAGTAAGAGATAAGATCCTCCTCAACTATAATTAGATTGCTGGAAGTTTCTAGAGCTCTTGTGAGACAAATGGTCGAGTTGATAGATAGCTCAGTCCAATCCTAATCCAACTTGGGAGCCTTAAGCCAAATGGTGCCCACTTTTAGTGTGTATTAAGAGTCTTGAAACTGAGCATCTAATGATGCTCCATTGGACCATTTAATAAGCAGTGGAAACCACTGTTGGCCACACAAACAAAAAAGCATTAGCTTGGGGAAGTAAGTGCCAAATCTGTCTGTTTAGCATTCAGAAACGTCGTCGAGCAGGCAGGGGGCGGGTTACAGTTAAGGACCACCATAAGCCACCACCATGTGCCTAGTCCCAATCGAAAGCGCGATCCGGTTGGAACCATGAATGTAGAATTCTTATGTGAGGCCTTCTTAGAAGGAAGACAATGAAAATGACTTTACACAAGTCACGTCTCACTTGATCATGCATGCCAATTCTCTCCATCTTAGGACCATTGTGTAGCAGAGTACTTTACAATCAAATCTCTATCACCACTACAAGCAAACCAACAACCACAGATATGGAAGCAACAGTTCTCAAACGTTTGACATTTTACTGAACACAATTTGCTATGTTATGTCAACAAGCTCCCATATCGAAAAACGGCCCAAAACTTATCAACCGTCTGTGGATACAGGAGATAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGATTGAAACTGAAATGATATGCTAGGACCACAGAAGGGCATGTGATATTTGAGTTAGCTGAGACAAAAGGGGGGGTTTTGGTTAGCAATGTTAATCAAATAGGAAGTGACAGATGGGCCTTTAGGGGCAGAAGAAGAAAGGGCAAGGCTAATCAGTGTTTTCATTATCAAATAAATGAAAAGCTTACATGTGAGCTGTGATGCTTCAATTCACAGCTCAAGGACCCATCTTTTTCAAGTTTTAATTAAATATATTTTTTATGTTGAAAAATTCAATGAAATATGTGGAG

Coding sequence (CDS)

ATGAGGAACGAATTTTCTGATTTGGTGGTCGACAATATGAAGAAAAGCCGAAAAGTGGAGAAGAATAAATTGAAAGTTGATGATATTGAGTTCTTTAAGAGAAGAAATTATGTTGTACAAGAGCGTGATGCTGGTCCTAGTGAATCAGAAGCAAGTGGAGATAGAATGAGTAGGTATTCCTCGAAGAGTTCAGTCAAGAGTTCAATCGAAGACGAGTTGCCTGAGCTTGTTGTTTTTCTCCAAGAAACAAACTATGAATTTGTGAAAGACATTTGCATTGACGAAGCAGTAACATCGCGTCAAAAGTGCTTTAAGGAGAGCTGTCACACAGAAAACGATCATGTCCCCTGCATGCTCAAATATAATGCAGGAGAAACTGATGCTGAATCAACTGAAGAATCCAACGATTCGGATTCGACAATTTCAAGTATTGAATCAACACAGACCCTTGAGGAAAACTTTAACGAAGTTTACGAGAAGCAAAAGGTTCATTCTGATGCAATAGATGTCCCTTCTGAGGTTCCCCGTAAGAAATCTGTGCCAAAATTATTTCTTGATAGAAAGGTTACAGGTAAAAAGGCAGCATCTTCTACAAACTCGATTGCAATATCATTGAATAAGATACTCGATGAAAACAGAAACAAAGGAAAAGCAGTTGCCAGAAGCAACATTGAACATGGCAAAAATTTTCGCAACTCCGGTTTATCACAAAGCACAATAGAGGGTGGTAGCAGCAATTGGACGGCAGGTTGTGGTCATTGTCATGACTGTACCATGGCCGAATACAAGGACTATACACCTGAAAACGAAACGGGACTATACAGTAGCCATTGTTCCTCTGCAGGTGATCCTAGTTTGAACTCAGTGAGAAGACCCTCGATGTCGTCTTATTTGGGCAGTGGATCTCTTCGGTCGAATAGCAGCACCAACAGCTCACATTCTTTTGCTTTTCCAATTTTGCCAACAGAATGGAATGGAAGTCCAGAAAGGATGGCAAAAGCTGATCCGTTGCAAACACGAAGGCGGCAACTATGGAGACTATGTTTGCCCTGCTGTAATTTCTGA

Protein sequence

MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYSSKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLKYNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSVPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTIEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGSGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF

Homology

[Close]

BLAST of Cmc02g0056121 vs. NCBI nr
Match: XP_008453313.1 (PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453315.1 PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453316.1 PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo])

HSP 1 Score: 685.3 bits (1767), Expect = 2.9e-193
Identity = 352/354 (99.44%), Postives = 352/354 (99.44%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNF NSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS 300
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS 300

Query: 301 GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF 355
           GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLC PCCNF
Sbjct: 301 GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCFPCCNF 354

[Close]

BLAST of Cmc02g0056121 vs. NCBI nr
Match: XP_031742010.1 (uncharacterized protein LOC105434534 [Cucumis sativus] >XP_031742012.1 uncharacterized protein LOC105434534 [Cucumis sativus])

HSP 1 Score: 640.2 bits (1650), Expect = 1.1e-179
Identity = 332/355 (93.52%), Postives = 342/355 (96.34%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG   RNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLG 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAGDPSLNSVRRPS+SSYLG
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAGDPSLNSVRRPSLSSYLG 300

Query: 301 SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF 355
           SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRR+LWRLC PCCNF
Sbjct: 301 SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRKLWRLCFPCCNF 353

[Close]

BLAST of Cmc02g0056121 vs. NCBI nr
Match: TYJ98239.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 543.5 bits (1399), Expect = 1.3e-150
Identity = 282/283 (99.65%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGD 284
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA D
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVD 283

[Close]

BLAST of Cmc02g0056121 vs. NCBI nr
Match: KAA0058016.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 540.4 bits (1391), Expect = 1.1e-149
Identity = 281/283 (99.29%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNF NSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGD 284
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA D
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVD 283

[Close]

BLAST of Cmc02g0056121 vs. NCBI nr
Match: KAE8652447.1 (hypothetical protein Csa_014115 [Cucumis sativus])

HSP 1 Score: 497.3 bits (1279), Expect = 1.1e-136
Identity = 262/282 (92.91%), Postives = 270/282 (95.74%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG   RNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA 282
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSA
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSA 280

[Close]

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL
Match: A0A1S3BVX8 (uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=4 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 1.4e-193
Identity = 352/354 (99.44%), Postives = 352/354 (99.44%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNF NSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS 300
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLGS 300

Query: 301 GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF 355
           GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLC PCCNF
Sbjct: 301 GSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCFPCCNF 354

[Close]

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL
Match: A0A0A0LRX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1)

HSP 1 Score: 640.2 bits (1650), Expect = 5.1e-180
Identity = 332/355 (93.52%), Postives = 342/355 (96.34%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQE DAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSR+KCF+ESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAID-VPSEVPRKKS 180
           YNAGETDAESTEESNDS+STISS +STQTL++NFNEVYEKQK HSDAID VPSEVP KKS
Sbjct: 121 YNAGETDAESTEESNDSESTISSTDSTQTLDKNFNEVYEKQKFHSDAIDEVPSEVPHKKS 180

Query: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQST 240
           VPKLFLDRKVTGKK ASSTNSIAISLNKILDEN+NKGKAVARSNIEHG   RNSGLSQST
Sbjct: 181 VPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQST 240

Query: 241 IEGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSSYLG 300
           +EGGSSNWTAGCGHC DCTMAEY  YTPENETGLYSSHCSSAGDPSLNSVRRPS+SSYLG
Sbjct: 241 VEGGSSNWTAGCGHCRDCTMAEY--YTPENETGLYSSHCSSAGDPSLNSVRRPSLSSYLG 300

Query: 301 SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF 355
           SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRR+LWRLC PCCNF
Sbjct: 301 SGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRKLWRLCFPCCNF 353

[Close]

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL
Match: A0A5D3BGS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00110 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 6.5e-151
Identity = 282/283 (99.65%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGD 284
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA D
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVD 283

[Close]

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL
Match: A0A5A7UV29 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003210 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 5.5e-150
Identity = 281/283 (99.29%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180
           YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEENFNEVYEKQKVHSDAIDVPSEVPRKKSV 180

Query: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFRNSGLSQSTI 240
           PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNF NSGLSQSTI
Sbjct: 181 PKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQSTI 240

Query: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAGD 284
           EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSA D
Sbjct: 241 EGGSSNWTAGCGHCHDCTMAEYKDYTPENETGLYSSHCSSAVD 283

[Close]

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL
Match: A0A6J1C133 (uncharacterized protein LOC111007481 OS=Momordica charantia OX=3673 GN=LOC111007481 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.9e-113
Identity = 238/367 (64.85%), Postives = 280/367 (76.29%), Query Frame = 0


Query: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60
           M NEFS LVVDN++KSR  EKNK KVD +E F+RR+Y+VQE D G  ESE SGD  SR+S
Sbjct: 1   MMNEFSSLVVDNLQKSRFTEKNKWKVDGVESFRRRSYMVQESDDGLGESEPSGDGRSRFS 60

Query: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120
           S     SSI+DELPE VVFLQETNYEFVKDICID+A TS +KCF+E C  EN +VP +LK
Sbjct: 61  S----MSSIDDELPEFVVFLQETNYEFVKDICIDKAETSHEKCFEEDCDRENGYVPYLLK 120

Query: 121 YNAGETDAESTEESNDSDSTISSIESTQTLEEN-FNEVYEKQKVHSDAID-VPSEVPRKK 180
           YN   +D  +TEES D +S+ISSIES Q LE++ FN+V EK+KVH D ID VPS++PRKK
Sbjct: 121 YNIAVSDGGATEESEDLESSISSIESMQVLEKDFFNKVNEKRKVHYDEIDEVPSDLPRKK 180

Query: 181 SVPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNI--EHGKNFRNSGLS 240
           +VPKL LDRKVTGKKAA+STNSIAISL+KILDEN++KGKA ARSN   EHG  + NS LS
Sbjct: 181 TVPKLLLDRKVTGKKAAASTNSIAISLSKILDENKHKGKAAARSNTEHEHGSIYCNSNLS 240

Query: 241 QSTIEGGSSNWTAGCGHCHDCTMAEY-KDYTPENETGLYSSH--------CSSAGDPSLN 300
            S I GG+S+    CGHCH+C      ++Y PE++ G + SH         SS  DP+ N
Sbjct: 241 MSKIRGGASS----CGHCHECGSTSIPENYAPEDQMGSHRSHGFVYQREDGSSELDPAFN 300

Query: 301 SVRRPSMSSYLGSGSLRSNSSTNSSHSFAFPILPTEWNGSPERMAKADPLQTRRRQLWRL 355
            VR+PS+SSYLGS SLRSNSSTNSS SFAFPIL TEWNGSPERM  ADP+Q RRRQLWR+
Sbjct: 301 PVRKPSLSSYLGSTSLRSNSSTNSSQSFAFPILQTEWNGSPERMVNADPVQRRRRQLWRI 359

[Close]

BLAST of Cmc02g0056121 vs. TAIR 10
Match: AT2G03810.1 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 108/407 (26.54%), Postives = 171/407 (42.01%), Query Frame = 0


Query: 21  KNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYSS---KSSV----KSSIEDEL 80
           KN   V ++ F+  R+    E +AG    + S D  +   S   K  V    K+    +L
Sbjct: 42  KNNNNVCEL-FYDTRSGEEWENEAGKKVRDTSHDCDANVDSPEKKDPVFYMDKNVTACDL 101

Query: 81  PELVVFLQETNYEFVKDICIDEAVTSRQK-CFKESCHTENDHVPCMLKYNAGETDAESTE 140
           PE+VV  +E  Y  VKDIC+DE V  ++K  F E    ++     ++K +    +   T+
Sbjct: 102 PEIVVCYKENTYHIVKDICVDEGVPVQEKFLFGEKDSVKSSSTEDLMKADKTNVNPSETK 161

Query: 141 ESNDSDSTISSIE------STQTLEE--------------NFNE----VYEKQKVHSDAI 200
            + DS S +   E      + + +EE              N+N+    V E+ K      
Sbjct: 162 SAEDSISKVDDSEFCNDHKTDRDVEESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHG 221

Query: 201 DVPSEV-PRKKSVPKLFL--------------------DRKVTGKKAASSTNSIAISLNK 260
             PSE+ P + S  ++ +                    ++K   +   SS +    S ++
Sbjct: 222 LSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQ 281

Query: 261 ILDENRNKGKAVA----RSNIEHGKNFRNSGLSQSTIEGGSSNWTAGCGHCHDCTMAEYK 320
           + D+ +   +  A        E  K       S ST      N T     C++    E +
Sbjct: 282 LQDKEKRSLETTAIETELEKTEEPKQGEEKLSSVSTTTSQEPNKT-----CNEPEKPETE 341

Query: 321 DYTPEN-------ETGLYSSHCSSAGDPSLNSVRRPSMS---------SYLGSGSLRSNS 355
           ++  +N       E   +SS  S  G+ S ++    S+S         +Y GS S+RS++
Sbjct: 342 NHHQQNCLVENSYEDDKFSS--SRFGETSFSAADSVSISGHITYSGPIAYSGSLSVRSDA 401

[Close]

BLAST of Cmc02g0056121 vs. TAIR 10
Match: AT2G03810.2 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 108/407 (26.54%), Postives = 171/407 (42.01%), Query Frame = 0


Query: 21  KNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYSS---KSSV----KSSIEDEL 80
           KN   V ++ F+  R+    E +AG    + S D  +   S   K  V    K+    +L
Sbjct: 42  KNNNNVCEL-FYDTRSGEEWENEAGKKVRDTSHDCDANVDSPEKKDPVFYMDKNVTACDL 101

Query: 81  PELVVFLQETNYEFVKDICIDEAVTSRQK-CFKESCHTENDHVPCMLKYNAGETDAESTE 140
           PE+VV  +E  Y  VKDIC+DE V  ++K  F E    ++     ++K +    +   T+
Sbjct: 102 PEIVVCYKENTYHIVKDICVDEGVPVQEKFLFGEKDSVKSSSTEDLMKADKTNVNPSETK 161

Query: 141 ESNDSDSTISSIE------STQTLEE--------------NFNE----VYEKQKVHSDAI 200
            + DS S +   E      + + +EE              N+N+    V E+ K      
Sbjct: 162 SAEDSISKVDDSEFCNDHKTDRDVEESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHG 221

Query: 201 DVPSEV-PRKKSVPKLFL--------------------DRKVTGKKAASSTNSIAISLNK 260
             PSE+ P + S  ++ +                    ++K   +   SS +    S ++
Sbjct: 222 LSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQ 281

Query: 261 ILDENRNKGKAVA----RSNIEHGKNFRNSGLSQSTIEGGSSNWTAGCGHCHDCTMAEYK 320
           + D+ +   +  A        E  K       S ST      N T     C++    E +
Sbjct: 282 LQDKEKRSLETTAIETELEKTEEPKQGEEKLSSVSTTTSQEPNKT-----CNEPEKPETE 341

Query: 321 DYTPEN-------ETGLYSSHCSSAGDPSLNSVRRPSMS---------SYLGSGSLRSNS 355
           ++  +N       E   +SS  S  G+ S ++    S+S         +Y GS S+RS++
Sbjct: 342 NHHQQNCLVENSYEDDKFSS--SRFGETSFSAADSVSISGHITYSGPIAYSGSLSVRSDA 401

[Close]

BLAST of Cmc02g0056121 vs. TAIR 10
Match: AT2G03810.3 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 108/407 (26.54%), Postives = 171/407 (42.01%), Query Frame = 0


Query: 21  KNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYSS---KSSV----KSSIEDEL 80
           KN   V ++ F+  R+    E +AG    + S D  +   S   K  V    K+    +L
Sbjct: 42  KNNNNVCEL-FYDTRSGEEWENEAGKKVRDTSHDCDANVDSPEKKDPVFYMDKNVTACDL 101

Query: 81  PELVVFLQETNYEFVKDICIDEAVTSRQK-CFKESCHTENDHVPCMLKYNAGETDAESTE 140
           PE+VV  +E  Y  VKDIC+DE V  ++K  F E    ++     ++K +    +   T+
Sbjct: 102 PEIVVCYKENTYHIVKDICVDEGVPVQEKFLFGEKDSVKSSSTEDLMKADKTNVNPSETK 161

Query: 141 ESNDSDSTISSIE------STQTLEE--------------NFNE----VYEKQKVHSDAI 200
            + DS S +   E      + + +EE              N+N+    V E+ K      
Sbjct: 162 SAEDSISKVDDSEFCNDHKTDRDVEESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHG 221

Query: 201 DVPSEV-PRKKSVPKLFL--------------------DRKVTGKKAASSTNSIAISLNK 260
             PSE+ P + S  ++ +                    ++K   +   SS +    S ++
Sbjct: 222 LSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQ 281

Query: 261 ILDENRNKGKAVA----RSNIEHGKNFRNSGLSQSTIEGGSSNWTAGCGHCHDCTMAEYK 320
           + D+ +   +  A        E  K       S ST      N T     C++    E +
Sbjct: 282 LQDKEKRSLETTAIETELEKTEEPKQGEEKLSSVSTTTSQEPNKT-----CNEPEKPETE 341

Query: 321 DYTPEN-------ETGLYSSHCSSAGDPSLNSVRRPSMS---------SYLGSGSLRSNS 355
           ++  +N       E   +SS  S  G+ S ++    S+S         +Y GS S+RS++
Sbjct: 342 NHHQQNCLVENSYEDDKFSS--SRFGETSFSAADSVSISGHITYSGPIAYSGSLSVRSDA 401

[Close]

BLAST of Cmc02g0056121 vs. TAIR 10
Match: AT2G03810.4 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 108/407 (26.54%), Postives = 171/407 (42.01%), Query Frame = 0


Query: 21  KNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYSS---KSSV----KSSIEDEL 80
           KN   V ++ F+  R+    E +AG    + S D  +   S   K  V    K+    +L
Sbjct: 42  KNNNNVCEL-FYDTRSGEEWENEAGKKVRDTSHDCDANVDSPEKKDPVFYMDKNVTACDL 101

Query: 81  PELVVFLQETNYEFVKDICIDEAVTSRQK-CFKESCHTENDHVPCMLKYNAGETDAESTE 140
           PE+VV  +E  Y  VKDIC+DE V  ++K  F E    ++     ++K +    +   T+
Sbjct: 102 PEIVVCYKENTYHIVKDICVDEGVPVQEKFLFGEKDSVKSSSTEDLMKADKTNVNPSETK 161

Query: 141 ESNDSDSTISSIE------STQTLEE--------------NFNE----VYEKQKVHSDAI 200
            + DS S +   E      + + +EE              N+N+    V E+ K      
Sbjct: 162 SAEDSISKVDDSEFCNDHKTDRDVEESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHG 221

Query: 201 DVPSEV-PRKKSVPKLFL--------------------DRKVTGKKAASSTNSIAISLNK 260
             PSE+ P + S  ++ +                    ++K   +   SS +    S ++
Sbjct: 222 LSPSEIEPDENSKDEVAISQDNDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQ 281

Query: 261 ILDENRNKGKAVA----RSNIEHGKNFRNSGLSQSTIEGGSSNWTAGCGHCHDCTMAEYK 320
           + D+ +   +  A        E  K       S ST      N T     C++    E +
Sbjct: 282 LQDKEKRSLETTAIETELEKTEEPKQGEEKLSSVSTTTSQEPNKT-----CNEPEKPETE 341

Query: 321 DYTPEN-------ETGLYSSHCSSAGDPSLNSVRRPSMS---------SYLGSGSLRSNS 355
           ++  +N       E   +SS  S  G+ S ++    S+S         +Y GS S+RS++
Sbjct: 342 NHHQQNCLVENSYEDDKFSS--SRFGETSFSAADSVSISGHITYSGPIAYSGSLSVRSDA 401

[Close]

BLAST of Cmc02g0056121 vs. TAIR 10
Match: AT5G60880.1 (breaking of asymmetry in the stomatal lineage )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 305 SNSSTNSSH------SFAFPILPTEWNGSPERMAKADPLQTRRRQLWRLCLPCCNF 355
           S+ S+ SSH      SFAFPIL  EW GSP +M ++D L  ++++   L   CC F
Sbjct: 207 SDKSSGSSHSDEGRGSFAFPILGVEWMGSPAKMPESDDLSPKKQKPVALGFQCCRF 262

The following BLAST results are available for this feature:

BLAST of Cmc02g0056121 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453313.1	2.9e-193	99.44	PREDICTED: uncharacterized protein LOC103494068 [Cucumis melo] >XP_008453315.1 P...	[more]
XP_031742010.1	1.1e-179	93.52	uncharacterized protein LOC105434534 [Cucumis sativus] >XP_031742012.1 uncharact...	[more]
TYJ98239.1	1.3e-150	99.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0058016.1	1.1e-149	99.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAE8652447.1	1.1e-136	92.91	hypothetical protein Csa_014115 [Cucumis sativus]	[more]

BLAST of Cmc02g0056121 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc02g0056121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVX8	1.4e-193	99.44	uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=...	[more]
A0A0A0LRX2	5.1e-180	93.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1	[more]
A0A5D3BGS8	6.5e-151	99.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UV29	5.5e-150	99.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1C133	1.9e-113	64.85	uncharacterized protein LOC111007481 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Cmc02g0056121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03810.1	1.1e-09	26.54	18S pre-ribosomal assembly protein gar2-related	[more]
AT2G03810.2	1.1e-09	26.54	18S pre-ribosomal assembly protein gar2-related	[more]
AT2G03810.3	1.1e-09	26.54	18S pre-ribosomal assembly protein gar2-related	[more]
AT2G03810.4	1.1e-09	26.54	18S pre-ribosomal assembly protein gar2-related	[more]
AT5G60880.1	1.1e-04	42.86	breaking of asymmetry in the stomatal lineage	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65
None	No IPR available	PANTHER	PTHR33914:SF4	SUBFAMILY NOT NAMED	coord: 2..354
IPR040378	Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGE	PANTHER	PTHR33914	18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN	coord: 2..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0056121.1	Cmc02g0056121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009786	regulation of asymmetric cell division