Cmc02g0055401 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0055401
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 22198547 .. 22199142 (+)
RNA-Seq Expression	Cmc02g0055401
Synteny	Cmc02g0055401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCGTTTATCCTCCTTCCACGCCTCCTTCTCTAGTTCTCAATCTTTCTTCACTGACACATCTATTGACCTTTTTCCTCTCTCTGAGTCCACTCCTGATAATGAGCTTGCTCAATCTGTATCTACTTCTGTAACCTTGGACCAGTCGTCCATCTCTGATGGGAATCCTGACCCTCCTTCAGACACCCCTCCTCGTTGTTCTACTCAGGTAAGGGAACCTCCTATTCATCTATAAGATTATCACTGTTTTTCTACTATTGTTTCCCACTTTCCCTTATTGAACCTACCTTTTATCAAGAGGCTAGTACTAACCCTTTATGACAGAAAGCGATGATTGATGAATTACAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGTTGCAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGCGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCTTGTGGCTCGGATGACGTCTGTGCGCAGTTTACTAGCTTTTGCTGCTGCCAAGCAATGA

mRNA sequence

ATGTTCTCTCGTTTATCCTCCTTCCACGCCTCCTTCTCTAGTTCTCAATCTTTCTTCACTGACACATCTATTGACCTTTTTCCTCTCTCTGAGTCCACTCCTGATAATGAGCTTGCTCAATCTGTATCTACTTCTGTAACCTTGGACCAGTCGTCCATCTCTGATGGGAATCCTGACCCTCCTTCAGACACCCCTCCTCGTTGTTCTACTCAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGTTGCAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGCGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCTTGTGGCTCGGATGACGTCTGTGCGCAGTTTACTAGCTTTTGCTGCTGCCAAGCAATGA

Coding sequence (CDS)

ATGTTCTCTCGTTTATCCTCCTTCCACGCCTCCTTCTCTAGTTCTCAATCTTTCTTCACTGACACATCTATTGACCTTTTTCCTCTCTCTGAGTCCACTCCTGATAATGAGCTTGCTCAATCTGTATCTACTTCTGTAACCTTGGACCAGTCGTCCATCTCTGATGGGAATCCTGACCCTCCTTCAGACACCCCTCCTCGTTGTTCTACTCAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGGTTGCAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTACTATTGAGCGTTATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCTTGTGGCTCGGATGACGTCTGTGCGCAGTTTACTAGCTTTTGCTGCTGCCAAGCAATGA

Protein sequence

MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDPPSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFALVARMTSVRSLLAFAAAKQ

Homology

[Close]

BLAST of Cmc02g0055401 vs. NCBI nr
Match: KAA0058069.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP
Sbjct: 397 MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 456

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 457 PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 516

Query: 121 QEYGIDYEETFALVARMTSV 141
           QEYGIDYEETFALVARMTS+
Sbjct: 517 QEYGIDYEETFALVARMTSL 536

[Close]

BLAST of Cmc02g0055401 vs. NCBI nr
Match: TYK28414.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSS QSFFTDTSIDLFPLSESTPDNELAQSVSTS TLDQSSISDGNP+P
Sbjct: 1   MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPDNELAQSVSTSATLDQSSISDGNPNP 60

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120

Query: 121 QEYGIDYEETFALVARMTSV 141
           QEYGIDYEETF LVARMTS+
Sbjct: 121 QEYGIDYEETFTLVARMTSL 140

[Close]

BLAST of Cmc02g0055401 vs. NCBI nr
Match: KAA0052097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 136/151 (90.07%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFH SFSS QSFFTDTSIDLFPLSESTPDNELAQS  TS T DQSSISDGNPDP
Sbjct: 630 MFSRLSSFHTSFSSPQSFFTDTSIDLFPLSESTPDNELAQSAPTSATSDQSSISDGNPDP 689

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
             D PPR ST+ALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 690 SPDIPPRRSTRALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 749

Query: 121 QEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           QE+GIDYEETFA VARMT VRSLLA AAAKQ
Sbjct: 750 QEFGIDYEETFAPVARMTYVRSLLAVAAAKQ 780

[Close]

BLAST of Cmc02g0055401 vs. NCBI nr
Match: KAA0065808.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ96547.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 137/168 (81.55%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSS QSFFTDTSIDLFPLSESTPDNELAQS STS T DQSSISDG+P+P
Sbjct: 155 MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPDNELAQSASTSATSDQSSISDGSPEP 214

Query: 61  PSDTPPR-----------------CSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHS 120
           P +TPPR                  ST ALEKTHTWDYVDLPP KRPIGCKWIYKIKTHS
Sbjct: 215 PPNTPPRRSTWIREPLIHLQDYHYFSTIALEKTHTWDYVDLPPCKRPIGCKWIYKIKTHS 274

Query: 121 DGTIERYKARLVAKGYSQEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           DGTIERYKARLVAKGYSQEYGIDYEETFA VARMTSVRSLL  AAAKQ
Sbjct: 275 DGTIERYKARLVAKGYSQEYGIDYEETFAHVARMTSVRSLLVVAAAKQ 322

[Close]

BLAST of Cmc02g0055401 vs. NCBI nr
Match: KAA0048357.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK01110.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63
Identity = 130/151 (86.09%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRL SFHA FSS QSFFTDTSIDLFPLSESTPDNE AQS  TS T DQSSISDG  +P
Sbjct: 288 MFSRLFSFHAFFSSPQSFFTDTSIDLFPLSESTPDNEFAQSAPTSATSDQSSISDGCSEP 347

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           P DTPPR ST+ALEK HTWDYVDLPP KRPIGCKWIYKIKTHSDGTIERYK RLVAKGYS
Sbjct: 348 PLDTPPRRSTRALEKMHTWDYVDLPPSKRPIGCKWIYKIKTHSDGTIERYKTRLVAKGYS 407

Query: 121 QEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           QEYGIDYEETFA VARMTSVR+LL  AAAKQ
Sbjct: 408 QEYGIDYEETFASVARMTSVRNLLDVAAAKQ 438

[Close]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-18
Identity = 39/79 (49.37%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 71  QALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEET 130
           ++L+K  T+  V+LP GKRP+ CKW++K+K   D  + RYKARLV KG+ Q+ GID++E 
Sbjct: 835 ESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEI 894

Query: 131 FALVARMTSVRSLLAFAAA 150
           F+ V +MTS+R++L+ AA+
Sbjct: 895 FSPVVKMTSIRTILSLAAS 913

[Close]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 77   HTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFALVA 136
            HTWD V  PP    I GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+ V 
Sbjct: 983  HTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVI 1042

Query: 137  RMTSVRSLLAFA 148
            + TS+R +L  A
Sbjct: 1043 KSTSIRIVLGVA 1054

[Close]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 77   HTWDYVDLPPGKRPI-GCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFALVA 136
            HTWD V  PP    I GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+ V 
Sbjct: 966  HTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVI 1025

Query: 137  RMTSVRSLLAFA 148
            + TS+R +L  A
Sbjct: 1026 KSTSIRIVLGVA 1037

[Close]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 41  SVSTSVTLDQSSISDGNPDPPSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIK 100
           +++T++  +  S+     DP      +    AL +  TW  V  P  +  +GCKW++K K
Sbjct: 19  TITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTK 78

Query: 101 THSDGTIERYKARLVAKGYSQEYGIDYEETFALVARMTSVRSLLAFA 148
            HSDGT++R KARLVAKG+ QE GI + ET++ V R  ++R++L  A
Sbjct: 79  LHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-12
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 77  HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFALVAR 136
           +TW     P  K  +  +W++ +K +  G   RYKARLVA+G++Q+Y IDYEETFA VAR
Sbjct: 921 NTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVAR 980

Query: 137 MTSVRSLLA 146
           ++S R +L+
Sbjct: 981 ISSFRFILS 989

[Close]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL
Match: A0A5A7UX31 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003750 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP
Sbjct: 397 MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 456

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 457 PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 516

Query: 121 QEYGIDYEETFALVARMTSV 141
           QEYGIDYEETFALVARMTS+
Sbjct: 517 QEYGIDYEETFALVARMTSL 536

[Close]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL
Match: A0A5D3DXY4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00420 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSS QSFFTDTSIDLFPLSESTPDNELAQSVSTS TLDQSSISDGNP+P
Sbjct: 1   MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPDNELAQSVSTSATLDQSSISDGNPNP 60

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120

Query: 121 QEYGIDYEETFALVARMTSV 141
           QEYGIDYEETF LVARMTS+
Sbjct: 121 QEYGIDYEETFTLVARMTSL 140

[Close]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL
Match: A0A5A7UCC7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00790 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 136/151 (90.07%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFH SFSS QSFFTDTSIDLFPLSESTPDNELAQS  TS T DQSSISDGNPDP
Sbjct: 630 MFSRLSSFHTSFSSPQSFFTDTSIDLFPLSESTPDNELAQSAPTSATSDQSSISDGNPDP 689

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
             D PPR ST+ALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS
Sbjct: 690 SPDIPPRRSTRALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 749

Query: 121 QEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           QE+GIDYEETFA VARMT VRSLLA AAAKQ
Sbjct: 750 QEFGIDYEETFAPVARMTYVRSLLAVAAAKQ 780

[Close]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL
Match: A0A5A7VDQ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002040 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 137/168 (81.55%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRLSSFHASFSS QSFFTDTSIDLFPLSESTPDNELAQS STS T DQSSISDG+P+P
Sbjct: 155 MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPDNELAQSASTSATSDQSSISDGSPEP 214

Query: 61  PSDTPPR-----------------CSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHS 120
           P +TPPR                  ST ALEKTHTWDYVDLPP KRPIGCKWIYKIKTHS
Sbjct: 215 PPNTPPRRSTWIREPLIHLQDYHYFSTIALEKTHTWDYVDLPPCKRPIGCKWIYKIKTHS 274

Query: 121 DGTIERYKARLVAKGYSQEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           DGTIERYKARLVAKGYSQEYGIDYEETFA VARMTSVRSLL  AAAKQ
Sbjct: 275 DGTIERYKARLVAKGYSQEYGIDYEETFAHVARMTSVRSLLVVAAAKQ 322

[Close]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL
Match: A0A5A7U286 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00050 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 130/151 (86.09%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MFSRLSSFHASFSSSQSFFTDTSIDLFPLSESTPDNELAQSVSTSVTLDQSSISDGNPDP 60
           MFSRL SFHA FSS QSFFTDTSIDLFPLSESTPDNE AQS  TS T DQSSISDG  +P
Sbjct: 288 MFSRLFSFHAFFSSPQSFFTDTSIDLFPLSESTPDNEFAQSAPTSATSDQSSISDGCSEP 347

Query: 61  PSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYS 120
           P DTPPR ST+ALEK HTWDYVDLPP KRPIGCKWIYKIKTHSDGTIERYK RLVAKGYS
Sbjct: 348 PLDTPPRRSTRALEKMHTWDYVDLPPSKRPIGCKWIYKIKTHSDGTIERYKTRLVAKGYS 407

Query: 121 QEYGIDYEETFALVARMTSVRSLLAFAAAKQ 152
           QEYGIDYEETFA VARMTSVR+LL  AAAKQ
Sbjct: 408 QEYGIDYEETFASVARMTSVRNLLDVAAAKQ 438

[Close]

BLAST of Cmc02g0055401 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-26
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 72  ALEKTHTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETF 131
           A+E THTW+   LPP K+PIGCKW+YKIK +SDGTIERYKARLVAKGY+Q+ GID+ ETF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167

Query: 132 ALVARMTSVRSLLAFAA 149
           + V ++TSV+ +LA +A
Sbjct: 168 SPVCKLTSVKLILAISA 184

[Close]

BLAST of Cmc02g0055401 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-16
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 41  SVSTSVTLDQSSISDGNPDPPSDTPPRCSTQALEKTHTWDYVDLPPGKRPIGCKWIYKIK 100
           +++T++  +  S+     DP      +    AL +  TW  V  P  +  +GCKW++K K
Sbjct: 19  TITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTK 78

Query: 101 THSDGTIERYKARLVAKGYSQEYGIDYEETFALVARMTSVRSLLAFA 148
            HSDGT++R KARLVAKG+ QE GI + ET++ V R  ++R++L  A
Sbjct: 79  LHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0055401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058069.1	2.6e-71	99.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK28414.1	3.2e-69	96.43	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0052097.1	6.7e-67	90.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065808.1	5.3e-64	81.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0048357.1	5.9e-63	86.09	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK01110.1 putative m...	[more]

BLAST of Cmc02g0055401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.0e-18	49.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.6e-15	55.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.1e-15	55.56	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.1e-14	38.32	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	8.4e-12	46.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc02g0055401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX31	1.3e-71	99.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DXY4	1.6e-69	96.43	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UCC7	3.3e-67	90.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VDQ9	2.6e-64	81.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U286	2.9e-63	86.09	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cmc02g0055401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.8e-26	66.23	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.5e-16	38.32	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 77..150 e-value: 7.1E-21 score: 74.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58
None	No IPR available	PANTHER	PTHR11439:SF302	REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED	coord: 84..147
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 84..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0055401.1	Cmc02g0055401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding