Cmc02g0054411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0054411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II D2 protein
Location	CMiso1.1chr02: 21587491 .. 21587688 (-)
RNA-Seq Expression	Cmc02g0054411
Synteny	Cmc02g0054411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTGCGGGTGTATTGGGCGCTACTCTGCGATGCGTTATTCTTGGTGCTATCGTAGAAAATACCTTATTTGAGGATGAGGATGGTGTAAATACATTCCATGCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTTCCAATAG

mRNA sequence

ATGGGAGTTGCGGGTGTATTGGGCGCTACTCTGCGATGCGTTATTCTTGGTGCTATCGTAGAAAATACCTTATTTGAGGATGAGGATGGTGTAAATACATTCCATGCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTTCCAATAG

Coding sequence (CDS)

ATGGGAGTTGCGGGTGTATTGGGCGCTACTCTGCGATGCGTTATTCTTGGTGCTATCGTAGAAAATACCTTATTTGAGGATGAGGATGGTGTAAATACATTCCATGCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTTCCAATAG

Protein sequence

MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFGVAFFQ

Homology

[Close]

BLAST of Cmc02g0054411 vs. NCBI nr
Match: KAA0032899.1 (photosystem II CP43 reaction center protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 9.1e-21
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTFHAFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFHAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. NCBI nr
Match: BAD17354.1 (rice chloroplast PSII D2 protein [Oryza sativa Japonica Group])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C ILGA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAILGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. NCBI nr
Match: PVH47814.1 (hypothetical protein PAHAL_4G159500 [Panicum hallii])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 55/65 (84.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMV ANRFWSQIFG
Sbjct: 74  MGVAGVLGAALLCAIYGATVENTLFEDGDGANTFRAFNPTQAEETYSMVIANRFWSQIFG 133

Query: 61  VAFFQ 66
           VAFFQ
Sbjct: 134 VAFFQ 138

[Close]

BLAST of Cmc02g0054411 vs. NCBI nr
Match: KAF2944620.1 (hypothetical protein DAI22_02g155901 [Oryza sativa Japonica Group])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C ILGA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAILGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. NCBI nr
Match: KRH62235.1 (hypothetical protein GLYMA_04G095000v4 [Glycine max])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
          MGVAGVLG TL CVI GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 2  MGVAGVLGTTLLCVIHGATVENTLFEDGDGANTFRAFNSTQAEETYSMVTANRFWSQIFG 61

Query: 61 VAF 64
          VAF
Sbjct: 62 VAF 64

[Close]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot
Match: A1E9Z3 (Photosystem II D2 protein OS=Agrostis stolonifera OX=63632 GN=psbD PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL
Match: A0A287Q826 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 56/65 (86.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAFFQ 66
           VAFFQ
Sbjct: 260 VAFFQ 264

[Close]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL
Match: A0A5A7SUQ3 (Photosystem II D2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001010 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTFHAFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFHAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL
Match: A0A2T8JD15 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_4G159500 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-21
Identity = 55/65 (84.62%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMV ANRFWSQIFG
Sbjct: 74  MGVAGVLGAALLCAIYGATVENTLFEDGDGANTFRAFNPTQAEETYSMVIANRFWSQIFG 133

Query: 61  VAFFQ 66
           VAFFQ
Sbjct: 134 VAFFQ 138

[Close]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL
Match: Q6Z1U4 (Photosystem II D2 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0022A24.62 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-21
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C ILGA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAILGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

[Close]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL
Match: K7KJ53 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G095000 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-21
Identity = 55/63 (87.30%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
          MGVAGVLG TL CVI GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 2  MGVAGVLGTTLLCVIHGATVENTLFEDGDGANTFRAFNSTQAEETYSMVTANRFWSQIFG 61

Query: 61 VAF 64
          VAF
Sbjct: 62 VAF 64

[Close]

BLAST of Cmc02g0054411 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 106.7 bits (265), Expect = 7.2e-24
Identity = 54/63 (85.71%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MGVAGVLGATLRCVILGAIVENTLFEDEDGVNTFHAFNLTQAEETYSMVTANRFWSQIFG 60
           MGVAGVLGA L C I GA VENTLFED DG NTF AFN TQAEETYSMVTANRFWSQIFG
Sbjct: 200 MGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259

Query: 61  VAF 64
           VAF
Sbjct: 260 VAF 262

The following BLAST results are available for this feature:

BLAST of Cmc02g0054411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032899.1	9.1e-21	87.30	photosystem II CP43 reaction center protein-like [Cucumis melo var. makuwa]	[more]
BAD17354.1	1.2e-20	87.30	rice chloroplast PSII D2 protein [Oryza sativa Japonica Group]	[more]
PVH47814.1	1.2e-20	84.62	hypothetical protein PAHAL_4G159500 [Panicum hallii]	[more]
KAF2944620.1	1.2e-20	87.30	hypothetical protein DAI22_02g155901 [Oryza sativa Japonica Group]	[more]
KRH62235.1	1.6e-20	87.30	hypothetical protein GLYMA_04G095000v4 [Glycine max]	[more]

BLAST of Cmc02g0054411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FFP4	1.0e-22	85.71	Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1	[more]
Q3V539	1.0e-22	85.71	Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1	[more]
A4QJB0	1.0e-22	85.71	Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1	[more]
A4QJJ4	1.0e-22	85.71	Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1	[more]
A1E9Z3	1.0e-22	85.71	Photosystem II D2 protein OS=Agrostis stolonifera OX=63632 GN=psbD PE=3 SV=1	[more]

BLAST of Cmc02g0054411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A287Q826	2.0e-21	86.15	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A5A7SUQ3	4.4e-21	87.30	Photosystem II D2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A2T8JD15	5.8e-21	84.62	Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_4G159500 PE=3 SV=1	[more]
Q6Z1U4	5.8e-21	87.30	Photosystem II D2 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0022...	[more]
K7KJ53	7.6e-21	87.30	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G095000 PE=3 SV=1	[more]

BLAST of Cmc02g0054411 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	7.2e-24	85.71	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 1..65 e-value: 5.6E-8 score: 34.6
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..63
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..61 e-value: 2.7E-6 score: 26.8
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..63
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0054411.1	Cmc02g0054411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0010242	oxygen evolving activity