Cmc02g0054251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0054251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II reaction center protein Z
Location	CMiso1.1chr02: 21541904 .. 21542182 (-)
RNA-Seq Expression	Cmc02g0054251
Synteny	Cmc02g0054251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCTTATACATTTTATCAAAATTTTGGCTAGCTGGTAAAGGGATCGAATGGTATATTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGCTAATTTTGCATTAATTGTTACTTCATCAATCTTATTGATTAGTGTGCCCATTGTATTTGCTTCTCCTGATGGTGGGTCGGGTAACAAAAATGTTGTAGTTTCCAGTACATTATTACGGATTGGATTAGTCTTTCTTGTAGGTATCCTTAATTCTCTTATCTCTTAA

mRNA sequence

ATGCCTCCCTTATACATTTTATCAAAATTTTGGCTAGCTGGTAAAGGGATCGAATGGTATATTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGCTAATTTTGCATTAATTGTTACTTCATCAATCTTATTGATTAGTGTGCCCATTGTATTTGCTTCTCCTGATGGTGGGTCGGGTAACAAAAATGTTGTAGTTTCCAGTACATTATTACGGATTGGATTAGTCTTTCTTGTAGGTATCCTTAATTCTCTTATCTCTTAA

Coding sequence (CDS)

ATGCCTCCCTTATACATTTTATCAAAATTTTGGCTAGCTGGTAAAGGGATCGAATGGTATATTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGCTAATTTTGCATTAATTGTTACTTCATCAATCTTATTGATTAGTGTGCCCATTGTATTTGCTTCTCCTGATGGTGGGTCGGGTAACAAAAATGTTGTAGTTTCCAGTACATTATTACGGATTGGATTAGTCTTTCTTGTAGGTATCCTTAATTCTCTTATCTCTTAA

Protein sequence

MPPLYILSKFWLAGKGIEWYILLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSLIS

Homology

[Close]

BLAST of Cmc02g0054251 vs. NCBI nr
Match: YP_010035510.1 (photosystem II protein Z [Pouzolzia hirta] >QQQ88092.1 photosystem II protein Z [Pouzolzia hirta])

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-23
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11 WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
          +LA K I+WYI  LLVDWRIRNMTIAFQLA FALI+TS ILLISVP+VFASPDG   NKN
Sbjct: 13 FLANKKIKWYIILLLVDWRIRNMTIAFQLAVFALILTSLILLISVPVVFASPDGWLSNKN 72

Query: 71 VVVSSTLLRIGLVFLVGILNSLIS 93
          VVVS T L IGLVFLVGILNSLIS
Sbjct: 73 VVVSGTSLWIGLVFLVGILNSLIS 96

[Close]

BLAST of Cmc02g0054251 vs. NCBI nr
Match: YP_009942083.1 (photosystem II protein Z [Hovenia dulcis] >QOC71282.1 photosystem II protein Z [Hovenia dulcis])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 5  YILSKFWLAGKGIEWYILLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGS 64
          +  + FWL  +     +LLVDWRIRNMTIAFQLA FALI TSSILLISVP+VFASPDG +
Sbjct: 9  FFFTIFWLIKRSNGIILLLVDWRIRNMTIAFQLAVFALIATSSILLISVPVVFASPDGWA 68

Query: 65 GNKNVVVSSTLLRIGLVFLVGILNSLIS 93
          GNKNVV S T L IGLVFLVGILNSLIS
Sbjct: 69 GNKNVVFSGTSLWIGLVFLVGILNSLIS 96

[Close]

BLAST of Cmc02g0054251 vs. NCBI nr
Match: QWC53576.1 (photosystem II protein Z [Choerospondias axillaris])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 11 WLAGKGIEWY---ILLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNK 70
          +LA +GI+WY    LLV WRIRNMTIAFQLA FALI TSSILLISVP+VFASPDG S NK
Sbjct: 13 FLADRGIKWYSSFFLLVAWRIRNMTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNK 72

Query: 71 NVVVSSTLLRIGLVFLVGILNSLIS 93
          NVV S T L IGLVFLVGILNSLIS
Sbjct: 73 NVVFSGTSLWIGLVFLVGILNSLIS 97

[Close]

BLAST of Cmc02g0054251 vs. NCBI nr
Match: KAF4394533.1 (hypothetical protein F8388_020358 [Cannabis sativa])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11  WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
           +LA K I+WYI  LLV+WRIRNMTIAFQLA FALI TSSILLISVP+VFAS DG SGN+N
Sbjct: 123 FLADKEIKWYIILLLVNWRIRNMTIAFQLAVFALIATSSILLISVPVVFASLDGWSGNEN 182

Query: 71  VVVSSTLLRIGLVFLVGILNSLIS 93
           VV SST L IGLVFLVGILNS IS
Sbjct: 183 VVFSSTSLWIGLVFLVGILNSPIS 206

[Close]

BLAST of Cmc02g0054251 vs. NCBI nr
Match: QXP99927.1 (photosystem II protein Z [Artocarpus tonkinensis])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 11 WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
          +L  K I+WYI  LLVDWRIRNMTIAFQLA FALI TSSILLISVP+VFASPDG   NKN
Sbjct: 13 FLTDKEIKWYIILLLVDWRIRNMTIAFQLAVFALIATSSILLISVPVVFASPDGWLSNKN 72

Query: 71 VVVSSTLLRIGLVFLVGILNSLIS 93
          VV S T L I LVFLVGILNSLIS
Sbjct: 73 VVFSGTSLWIALVFLVGILNSLIS 96

[Close]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot
Match: Q4VZN6 (Photosystem II reaction center protein Z OS=Cucumis sativus OX=3659 GN=psbZ PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-19
Identity = 55/62 (88.71%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALIVTSSILLISVP+VFASPDG SGNKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSGNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot
Match: Q32902 (Photosystem II reaction center protein Z OS=Pisum sativum OX=3888 GN=psbZ PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-18
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALIVTSSILLISVP+VFASPDG S NKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot
Match: P56790 (Photosystem II reaction center protein Z OS=Arabidopsis thaliana OX=3702 GN=psbZ PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALI+TSSILLISVP+VFASPDG S NKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot
Match: Q5QA82 (Photosystem II reaction center protein Z OS=Acorus gramineus OX=55184 GN=psbZ PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALI TSSILLISVP+VFASPDG S NKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAIFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot
Match: Q09MI1 (Photosystem II reaction center protein Z OS=Citrus sinensis OX=2711 GN=psbZ PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALI TSSILLISVP+VFASPDG S NKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

[Close]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL
Match: A0A7T8V683 (Photosystem II protein Z OS=Gonostegia hirta OX=648870 GN=psbZ PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11 WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
          +LA K I+WYI  LLVDWRIRNMTIAFQLA FALI+TS ILLISVP+VFASPDG   NKN
Sbjct: 13 FLANKKIKWYIILLLVDWRIRNMTIAFQLAVFALILTSLILLISVPVVFASPDGWLSNKN 72

Query: 71 VVVSSTLLRIGLVFLVGILNSLIS 93
          VVVS T L IGLVFLVGILNSLIS
Sbjct: 73 VVVSGTSLWIGLVFLVGILNSLIS 96

[Close]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL
Match: A0A7L7T933 (Photosystem II reaction center protein Z OS=Hovenia dulcis OX=99292 GN=psbZ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.7e-23
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 5  YILSKFWLAGKGIEWYILLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGS 64
          +  + FWL  +     +LLVDWRIRNMTIAFQLA FALI TSSILLISVP+VFASPDG +
Sbjct: 9  FFFTIFWLIKRSNGIILLLVDWRIRNMTIAFQLAVFALIATSSILLISVPVVFASPDGWA 68

Query: 65 GNKNVVVSSTLLRIGLVFLVGILNSLIS 93
          GNKNVV S T L IGLVFLVGILNSLIS
Sbjct: 69 GNKNVVFSGTSLWIGLVFLVGILNSLIS 96

[Close]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL
Match: A0A7J6ENX8 (Photosystem II reaction center protein Z OS=Cannabis sativa OX=3483 GN=G4B88_007377 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11  WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
           +LA K I+WYI  LLV+WRIRNMTIAFQLA FALI TSSILLISVP+VFAS DG SGN+N
Sbjct: 137 FLADKEIKWYIILLLVNWRIRNMTIAFQLAVFALIATSSILLISVPVVFASLDGWSGNEN 196

Query: 71  VVVSSTLLRIGLVFLVGILNSLIS 93
           VV SST L IGLVFLVGILNS IS
Sbjct: 197 VVFSSTSLWIGLVFLVGILNSPIS 220

[Close]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL
Match: A0A7J6HGV5 (Photosystem II reaction center protein Z OS=Cannabis sativa OX=3483 GN=F8388_020358 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 11  WLAGKGIEWYI--LLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKN 70
           +LA K I+WYI  LLV+WRIRNMTIAFQLA FALI TSSILLISVP+VFAS DG SGN+N
Sbjct: 123 FLADKEIKWYIILLLVNWRIRNMTIAFQLAVFALIATSSILLISVPVVFASLDGWSGNEN 182

Query: 71  VVVSSTLLRIGLVFLVGILNSLIS 93
           VV SST L IGLVFLVGILNS IS
Sbjct: 183 VVFSSTSLWIGLVFLVGILNSPIS 206

[Close]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL
Match: A0A6B9TW67 (Photosystem II reaction center protein Z OS=Prunus davidiana OX=151430 GN=psbZ PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 5  YILSKFWLAGKGIEWYILLVDWRIRNMTIAFQLANFALIVTSSILLISVPIVFASPDGGS 64
          +  + FWL        +LLVDWRIRNMTIAFQLA FALI TS ILLISVP+VFASP+G S
Sbjct: 4  FFFTIFWLIKGSNGIILLLVDWRIRNMTIAFQLAVFALIATSLILLISVPVVFASPEGWS 63

Query: 65 GNKNVVVSSTLLRIGLVFLVGILNSLIS 93
          GNKNVV S T L IGLVFLVGILNSLIS
Sbjct: 64 GNKNVVFSGTSLWIGLVFLVGILNSLIS 91

[Close]

BLAST of Cmc02g0054251 vs. TAIR 10
Match: ATCG00300.1 (YCF9 )

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 31 MTIAFQLANFALIVTSSILLISVPIVFASPDGGSGNKNVVVSSTLLRIGLVFLVGILNSL 90
          MTIAFQLA FALI+TSSILLISVP+VFASPDG S NKNVV S T L IGLVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 91 IS 93
          IS
Sbjct: 61 IS 62

The following BLAST results are available for this feature:

BLAST of Cmc02g0054251 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010035510.1	6.2e-23	80.95	photosystem II protein Z [Pouzolzia hirta] >QQQ88092.1 photosystem II protein Z ...	[more]
YP_009942083.1	1.4e-22	73.86	photosystem II protein Z [Hovenia dulcis] >QOC71282.1 photosystem II protein Z [...	[more]
QWC53576.1	1.4e-22	78.82	photosystem II protein Z [Choerospondias axillaris]	[more]
KAF4394533.1	1.2e-21	79.76	hypothetical protein F8388_020358 [Cannabis sativa]	[more]
QXP99927.1	1.2e-21	78.57	photosystem II protein Z [Artocarpus tonkinensis]	[more]

BLAST of Cmc02g0054251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN6	5.6e-19	88.71	Photosystem II reaction center protein Z OS=Cucumis sativus OX=3659 GN=psbZ PE=3...	[more]
Q32902	2.8e-18	87.10	Photosystem II reaction center protein Z OS=Pisum sativum OX=3888 GN=psbZ PE=1 S...	[more]
P56790	3.7e-18	85.48	Photosystem II reaction center protein Z OS=Arabidopsis thaliana OX=3702 GN=psbZ...	[more]
Q5QA82	8.2e-18	85.48	Photosystem II reaction center protein Z OS=Acorus gramineus OX=55184 GN=psbZ PE...	[more]
Q09MI1	8.2e-18	85.48	Photosystem II reaction center protein Z OS=Citrus sinensis OX=2711 GN=psbZ PE=3...	[more]

BLAST of Cmc02g0054251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T8V683	3.0e-23	80.95	Photosystem II protein Z OS=Gonostegia hirta OX=648870 GN=psbZ PE=4 SV=1	[more]
A0A7L7T933	6.7e-23	73.86	Photosystem II reaction center protein Z OS=Hovenia dulcis OX=99292 GN=psbZ PE=3...	[more]
A0A7J6ENX8	5.7e-22	79.76	Photosystem II reaction center protein Z OS=Cannabis sativa OX=3483 GN=G4B88_007...	[more]
A0A7J6HGV5	5.7e-22	79.76	Photosystem II reaction center protein Z OS=Cannabis sativa OX=3483 GN=F8388_020...	[more]
A0A6B9TW67	1.3e-21	72.73	Photosystem II reaction center protein Z OS=Prunus davidiana OX=151430 GN=psbZ P...	[more]

BLAST of Cmc02g0054251 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00300.1	2.6e-19	85.48	YCF9	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036512	Photosystem II PsbZ superfamily	GENE3D	1.10.287.740	Photosystem II PsbZ, reaction centre	coord: 31..92 e-value: 6.7E-24 score: 85.6
IPR036512	Photosystem II PsbZ superfamily	SUPERFAMILY	161055	PsbZ-like	coord: 31..91
IPR002644	Photosystem II PsbZ, reaction centre	TIGRFAM	TIGR03043	TIGR03043	coord: 34..91 e-value: 5.1E-18 score: 62.7
IPR002644	Photosystem II PsbZ, reaction centre	PFAM	PF01737	Ycf9	coord: 35..91 e-value: 3.7E-18 score: 65.2
IPR002644	Photosystem II PsbZ, reaction centre	PANTHER	PTHR34971	PHOTOSYSTEM II REACTION CENTER PROTEIN Z	coord: 29..92
IPR002644	Photosystem II PsbZ, reaction centre	HAMAP	MF_00644	PSII_PsbZ	coord: 31..92 score: 14.118688
None	No IPR available	PANTHER	PTHR34971:SF3	PHOTOSYSTEM II REACTION CENTER PROTEIN Z	coord: 29..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0054251.1	Cmc02g0054251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding