Cmc02g0054161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0054161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr02: 21464108 .. 21464644 (-)
RNA-Seq Expression	Cmc02g0054161
Synteny	Cmc02g0054161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAGAGCAAGATCTCAAATATGTTATCTGTTTACATGTGCAGGAACTGCTATATCTTGGCGGTCTGTAAAACAAACCATGACAGTCACTTCATCGAATCATGCAAAAATTCTTGCAATTGATGAAGCTAGTAAAGAATGTGTATGGTTGAGGTCAATGATTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACAAAAACTCTTCTATACGCATGACTTTAAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTAACCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTTAGAGAACTTAAGTGA

mRNA sequence

ATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAGAGCAAGATCTCAAATATGTTATCTGTTTACATGTGCAGGAACTGCTATATCTTGGCGGTCTGTAAAACAAACCATGACAGTCACTTCATCGAATCATGCAAAAATTCTTGCAATTGATGAAGCTAGTAAAGAATGTGTATGGTTGAGGTCAATGATTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACAAAAACTCTTCTATACGCATGACTTTAAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTAACCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTTAGAGAACTTAAGTGA

Coding sequence (CDS)

ATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTAGTTATGCGGATGCTGGATATTTATCTGATCCACACAGAGCAAGATCTCAAATATGTTATCTGTTTACATGTGCAGGAACTGCTATATCTTGGCGGTCTGTAAAACAAACCATGACAGTCACTTCATCGAATCATGCAAAAATTCTTGCAATTGATGAAGCTAGTAAAGAATGTGTATGGTTGAGGTCAATGATTCATCATATTCGAGAAACATGTGGTTTGTATTTCAGTAAAAATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACAAAAACTCTTCTATACGCATGACTTTAAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTAACCACATCAACATTTGAAAAGCTAGTGCACAACATTGGAATGCGACGACTTAGAGAACTTAAGTGA

Protein sequence

MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAKILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK

Homology

[Close]

BLAST of Cmc02g0054161 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-84
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           MGLFYSNKSNFDLV YADAG+LSDPH+ARSQ  YLFTC GTAISWRSVKQTMT TSSNHA
Sbjct: 82  MGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHA 141

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +ILAI EAS+ECVWLRSM H+IRETCGL FSKNLPTILFEDNTACI QIKGGYIKGDRTK
Sbjct: 142 EILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTK 201

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK 179
           HIS KLFYTHD +ENGDISVQQISSKDNL DLFTKAL TSTFEKLVHNIGMR+LRELK
Sbjct: 202 HISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc02g0054161 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 155/178 (87.08%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           M LFYSNKSNFDLV YADAGYLSDP +ARSQI YLFT  GTAISWRSVKQTMT TSSNHA
Sbjct: 92  MSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +ILAI E S+ECVWLRSM HHIRETCGL FSKNLPTILFEDNTACIAQIKGGYIKGDRTK
Sbjct: 152 EILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 211

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK 179
           H+S KLFYTH+ +ENGDISVQQISSKDNL DLFTKAL T TFEKLVHNIGM RLRELK
Sbjct: 212 HMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc02g0054161 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 274.6 bits (701), Expect = 5.9e-70
Identity = 132/177 (74.58%), Postives = 148/177 (83.62%), Query Frame = 0


Query: 1    MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
            +GLFYSN S   L+ YADAGYLSDPH+ARSQ  Y+FTC G AISWRSVKQT+T TSSNH+
Sbjct: 1031 LGLFYSNGSASQLIGYADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQTLTATSSNHS 1090

Query: 61   KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
            +I+AI E S+ECVWLRSMI HIRE CGL   K+ PTIL+EDN ACI QIKGGYIKGDRTK
Sbjct: 1091 EIIAIHETSRECVWLRSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKGGYIKGDRTK 1150

Query: 121  HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLREL 178
            HIS K FYTHD ++NGDI VQQI S DNLADLFTKAL T+TF+KLV NIGMRRL+ L
Sbjct: 1151 HISPKFFYTHDLQKNGDIDVQQIRSSDNLADLFTKALPTTTFKKLVANIGMRRLKNL 1207

[Close]

BLAST of Cmc02g0054161 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 274.6 bits (701), Expect = 5.9e-70
Identity = 131/176 (74.43%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 2   GLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAK 61
           GLFYSN     L+ YADAGYLSDPH+ARSQ  YLFTC  TAISWRS KQT+  TSSNHA+
Sbjct: 105 GLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAE 164

Query: 62  ILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKH 121
           ILAI EAS+ECVWLRSM  HIR TCGL  +K +PTIL+EDN ACIAQ+KGGYIKGDRTKH
Sbjct: 165 ILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKH 224

Query: 122 ISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLREL 178
           IS K F+TH+ +ENGDI VQQI S DNLADLFTK+L TSTFEK+VH IGMRRL++L
Sbjct: 225 ISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc02g0054161 vs. NCBI nr
Match: WP_168415592.1 (Ty1/Copia family ribonuclease HI [Acinetobacter indicus])

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-69
Identity = 129/178 (72.47%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           MGL+YS     +L+ YADAGYLSDPH  RSQ  Y+FTC GTAISWRS+KQT++ TSSNH+
Sbjct: 130 MGLYYSYAPEAELIGYADAGYLSDPHNGRSQTGYVFTCGGTAISWRSMKQTISATSSNHS 189

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +I+AI EAS+ECVWLRS+IHHIRE  GL   KN+PT L+EDN ACIAQ+KGGYIKGDRTK
Sbjct: 190 EIIAIHEASRECVWLRSVIHHIREASGLTLKKNVPTTLYEDNAACIAQLKGGYIKGDRTK 249

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK 179
           HIS K F+THD ++ GDI VQQI S DNLADLFTKAL TSTFEKLVH IGMR+LR LK
Sbjct: 250 HISPKFFFTHDLQKRGDIDVQQIRSSDNLADLFTKALPTSTFEKLVHKIGMRKLRNLK 307

[Close]

BLAST of Cmc02g0054161 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-13
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 0


Query: 13   LVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAKILAIDEASKEC 72
            L  Y DA    D    +S   YLFT +G AISW+S  Q     S+  A+ +A  E  KE 
Sbjct: 1175 LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEM 1234

Query: 73   VWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISQKLFYTHDF 132
            +WL+  +  +    GL+  +    +++ D+ + I   K       RTKHI  +  +  + 
Sbjct: 1235 IWLKRFLQEL----GLHQKE---YVVYCDSQSAIDLSKNSMYHA-RTKHIDVRYHWIREM 1294

Query: 133  KENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGM 172
             ++  + V +IS+ +N AD+ TK +  + FE     +GM
Sbjct: 1295 VDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc02g0054161 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 0


Query: 1    MGLFYSNKSNFD--LVSYADAGYLSDPHRARSQICYLFTCAG-TAISWRSVKQTMTVTSS 60
            M L +     F+  ++ Y D+ +       +S   YLF       I W + +Q     SS
Sbjct: 1234 MKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASS 1293

Query: 61   NHAKILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGD 120
              A+ +A+ EA +E +WL+ ++  I            P  ++EDN  CI+ I        
Sbjct: 1294 TEAEYMALFEAVREALWLKFLLTSIN------IKLENPIKIYEDNQGCIS-IANNPSCHK 1353

Query: 121  RTKHISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGM 172
            R KHI  K  +  +  +N  I ++ I +++ LAD+FTK L  + F +L   +G+
Sbjct: 1354 RAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc02g0054161 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 45/173 (26.01%), Postives = 79/173 (45.66%), Query Frame = 0


Query: 2    GLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAK 61
            G+F    +   L +Y+DA +  D     S   Y+       ISW S KQ   V SS  A+
Sbjct: 1298 GIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1357

Query: 62   ILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKH 121
              ++   S E  W+ S++  +    G+  ++  P +++ DN      +    +   R KH
Sbjct: 1358 YRSVANTSSEMQWICSLLTEL----GIRLTR--PPVIYCDNVGA-TYLCANPVFHSRMKH 1417

Query: 122  ISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRL 175
            I+    +  +  ++G + V  +S+ D LAD  TK L+ + F+     IG+ R+
Sbjct: 1418 IAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc02g0054161 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 45/170 (26.47%), Postives = 75/170 (44.12%), Query Frame = 0


Query: 2    GLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAK 61
            G+F    +   L +Y+DA +  D     S   Y+       ISW S KQ   V SS  A+
Sbjct: 1281 GIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1340

Query: 62   ILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKH 121
              ++   S E  W+ S++  +    G+  S   P +++ DN      +    +   R KH
Sbjct: 1341 YRSVANTSSELQWICSLLTEL----GIQLSH--PPVIYCDNVGA-TYLCANPVFHSRMKH 1400

Query: 122  ISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGM 172
            I+    +  +  ++G + V  +S+ D LAD  TK L+   F+     IG+
Sbjct: 1401 IALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.1e-85
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           MGLFYSNKSNFDLV YADAG+LSDPH+ARSQ  YLFTC GTAISWRSVKQTMT TSSNHA
Sbjct: 82  MGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHA 141

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +ILAI EAS+ECVWLRSM H+IRETCGL FSKNLPTILFEDNTACI QIKGGYIKGDRTK
Sbjct: 142 EILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTK 201

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK 179
           HIS KLFYTHD +ENGDISVQQISSKDNL DLFTKAL TSTFEKLVHNIGMR+LRELK
Sbjct: 202 HISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 155/178 (87.08%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           M LFYSNKSNFDLV YADAGYLSDP +ARSQI YLFT  GTAISWRSVKQTMT TSSNHA
Sbjct: 92  MSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +ILAI E S+ECVWLRSM HHIRETCGL FSKNLPTILFEDNTACIAQIKGGYIKGDRTK
Sbjct: 152 EILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 211

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLRELK 179
           H+S KLFYTH+ +ENGDISVQQISSKDNL DLFTKAL T TFEKLVHNIGM RLRELK
Sbjct: 212 HMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL
Match: U5CXL6 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04311p00004950 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.8e-70
Identity = 131/176 (74.43%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 2   GLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHAK 61
           GLFYSN     L+ YADAGYLSDPH+ARSQ  YLFTC  TAISWRS KQT+  TSSNHA+
Sbjct: 105 GLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAE 164

Query: 62  ILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTKH 121
           ILAI EAS+ECVWLRSM  HIR TCGL  +K +PTIL+EDN ACIAQ+KGGYIKGDRTKH
Sbjct: 165 ILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKH 224

Query: 122 ISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLREL 178
           IS K F+TH+ +ENGDI VQQI S DNLADLFTK+L TSTFEK+VH IGMRRL++L
Sbjct: 225 ISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL
Match: A0A2N9FGC6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13962 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.7e-68
Identity = 126/177 (71.19%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           MGLFY NKSN  LV YADAGYLSDPH+ RSQ  YLFTC  TAISWRSVKQT++ TSSNH+
Sbjct: 574 MGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHS 633

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +I+AI EAS+ECVWLRS+I HIRE CGL   K+ PTIL+EDN ACI QI+GGYIKGDRTK
Sbjct: 634 EIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGGYIKGDRTK 693

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLREL 178
           HIS K FYTH+ +++GDI V+QI S +NLAD+FTK+L T+TF+K+VH+IGMRRL++L
Sbjct: 694 HISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPTTTFKKIVHSIGMRRLKDL 750

[Close]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.7e-68
Identity = 126/177 (71.19%), Postives = 151/177 (85.31%), Query Frame = 0


Query: 1   MGLFYSNKSNFDLVSYADAGYLSDPHRARSQICYLFTCAGTAISWRSVKQTMTVTSSNHA 60
           MGLFY NKSN  LV YADAGYLSDPH+ RSQ  YLFTC  TAISWRSVKQT++ TSSNH+
Sbjct: 423 MGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAISWRSVKQTISATSSNHS 482

Query: 61  KILAIDEASKECVWLRSMIHHIRETCGLYFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 120
           +I+AI EAS+ECVWLRS+I HIRE CGL   K+ PTIL+EDN ACI QI+GGYIKGDRTK
Sbjct: 483 EIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILYEDNAACITQIRGGYIKGDRTK 542

Query: 121 HISQKLFYTHDFKENGDISVQQISSKDNLADLFTKALTTSTFEKLVHNIGMRRLREL 178
           HIS K FYTH+ +++GDI V+QI S +NLAD+FTK+L T+TF+K+VH+IGMRRL++L
Sbjct: 543 HISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPTTTFKKIVHSIGMRRLKDL 599

The following BLAST results are available for this feature:

BLAST of Cmc02g0054161 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	1.9e-84	88.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	1.1e-81	87.08	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
KAF7137709.1	5.9e-70	74.58	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
ERM98543.1	5.9e-70	74.43	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]
WP_168415592.1	2.2e-69	72.47	Ty1/Copia family ribonuclease HI [Acinetobacter indicus]	[more]

BLAST of Cmc02g0054161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.0e-13	29.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.8e-11	27.01	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.9e-10	26.01	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.3e-10	26.47	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	9.1e-85	88.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	5.5e-82	87.08	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
U5CXL6	2.8e-70	74.43	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s043...	[more]
A0A2N9FGC6	2.7e-68	71.19	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9IR78	2.7e-68	71.19	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc02g0054161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 16..159 e-value: 2.565E-45 score: 144.148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0054161.1	Cmc02g0054161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity