Cmc02g0053561 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0053561
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 20971603 .. 20972867 (+)
RNA-Seq Expression	Cmc02g0053561
Synteny	Cmc02g0053561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTTGTCCGTAGTCTTTTAGCCATTGCAGCTGCAAAACAATGGCACCTTCTTCAAATGGATGTTAAAAATGTGTTCTTGAATGGAACCATATATGAAGAAGTCTATATGAAACCACCACCTGGCACTACTCCACCACCGCAGAAAGTATGCCTTCTTCATCGTGCTCTTTACGGCCTCAAACAAGCTCCTCGAGCTTGGTTTGCAACATTTAATTCTACCATTACACAACTCGGGTTCACCTCCAGTTCTCATGATTCCACCTTATTTACTCGTCAGACGCCTAATGGTATTGTTCTCCTTCTTTTATATGTTGATGACATGATTATTACAGGTGATGACTCTCAAGCCATATCTAATCTGCAATATTACCTGATTAAGAATTTTGAAATGAAGGACTTAGGAAATCTCAGCTATTTTCCTGGTCTTGAGATCTCCTCATCACCTAGTGGCTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGACCTGGTACTACTGATTCTGCCACTTTCTTAACACCTTTGGATCCAAATGTGCGTCTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTTTGTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTGTGACTCGTCCAGATATTGCATATGCAGTTCATATTGTTAGTCAGTTATGGCTGCCCCTCGTACAATTCACTTCACTTCCGTCCTTCTCATTCTTCGCTACATCAAAGGTACTTTGGGTCATGGTCTACAGTTCTCCTCCTAATCCTCTCTGGTTCTCTCTGGTTTCTCTGATGCTGATTGGACGGGCGATCCTACTGATAGATGATCTACCGCTGGTTATTGCTTCTATCTAGGTGACGCTCTTATCTCCTAGCGAAGTAAGAAACAATCTGTTGTTTCCCGTTCCAGCACAGAGTCTGAATATCGTGCCCTAGCTGATGCCACTTCAGAATTACTTTGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGATAATTGCAGTGCTATTCAGATTGCACACAATGATGTATTCCATGAACGAACAAAGCATATTGAGAATGATTGTCACTTTGTTCGCCATCACCTACAGAGTAACACTCTCCATCTCCAACCTATCTCTACCACCGATCAACCTGCAGATATATTCACCAAAGCTCTCCATTCTCCTCATTTCACCCAGTTAATTCACAAACTCAAGGTGGTCTCAACACTCCCATCTTGA

mRNA sequence

ATGACGTTTGTCCGTAGTCTTTTAGCCATTGCAGCTGCAAAACAATGGCACCTTCTTCAAATGGATGTTAAAAATGTGTTCTTGAATGGAACCATATATGAAGAAGTCTATATGAAACCACCACCTGGCACTACTCCACCACCGCAGAAAGTATGCCTTCTTCATCGTGCTCTTTACGGCCTCAAACAAGCTCCTCGAGCTTGGTTTGCAACATTTAATTCTACCATTACACAACTCGGGTTCACCTCCAGTTCTCATGATTCCACCTTATTTACTCGTCAGACGCCTAATGGTATTGTTCTCCTTCTTTTATATGTTGATGACATGATTATTACAGGTGATGACTCTCAAGCCATATCTAATCTGCAATATTACCTGATTAAGAATTTTGAAATGAAGGACTTAGGAAATCTCAGCTATTTTCCTGGTCTTGAGATCTCCTCATCACCTAGTGGCTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGACCTGGTACTACTGATTCTGCCACTTTCTTAACACCTTTGGATCCAAATGTGCGTCTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTTTGTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTGTGACTCGTCCAGATATTGCATATGCAGTTCATATTGTTAGTCAGTTATGGCTGCCCCTCGTACAATTCACTTCACTTCCGTCCTTCTCATTCTTCGCTACATCAAAGCGAAGTAAGAAACAATCTGTTGTTTCCCGTTCCAGCACAGAGTCTGAATATCGTGCCCTAGCTGATGCCACTTCAGAATTACTTTGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGATAATTGCAGTGCTATTCAGATTGCACACAATGATGTATTCCATGAACGAACAAAGCATATTGAGAATGATTGTCACTTTGTTCGCCATCACCTACAGAGTAACACTCTCCATCTCCAACCTATCTCTACCACCGATCAACCTGCAGATATATTCACCAAAGCTCTCCATTCTCCTCATTTCACCCAGTTAATTCACAAACTCAAGGTGGTCTCAACACTCCCATCTTGA

Coding sequence (CDS)

ATGACGTTTGTCCGTAGTCTTTTAGCCATTGCAGCTGCAAAACAATGGCACCTTCTTCAAATGGATGTTAAAAATGTGTTCTTGAATGGAACCATATATGAAGAAGTCTATATGAAACCACCACCTGGCACTACTCCACCACCGCAGAAAGTATGCCTTCTTCATCGTGCTCTTTACGGCCTCAAACAAGCTCCTCGAGCTTGGTTTGCAACATTTAATTCTACCATTACACAACTCGGGTTCACCTCCAGTTCTCATGATTCCACCTTATTTACTCGTCAGACGCCTAATGGTATTGTTCTCCTTCTTTTATATGTTGATGACATGATTATTACAGGTGATGACTCTCAAGCCATATCTAATCTGCAATATTACCTGATTAAGAATTTTGAAATGAAGGACTTAGGAAATCTCAGCTATTTTCCTGGTCTTGAGATCTCCTCATCACCTAGTGGCTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGACCTGGTACTACTGATTCTGCCACTTTCTTAACACCTTTGGATCCAAATGTGCGTCTCACTCCTTTTGATGGTGTTCCTCTTGACGATCCCACTTTGTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTGTGACTCGTCCAGATATTGCATATGCAGTTCATATTGTTAGTCAGTTATGGCTGCCCCTCGTACAATTCACTTCACTTCCGTCCTTCTCATTCTTCGCTACATCAAAGCGAAGTAAGAAACAATCTGTTGTTTCCCGTTCCAGCACAGAGTCTGAATATCGTGCCCTAGCTGATGCCACTTCAGAATTACTTTGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGATAATTGCAGTGCTATTCAGATTGCACACAATGATGTATTCCATGAACGAACAAAGCATATTGAGAATGATTGTCACTTTGTTCGCCATCACCTACAGAGTAACACTCTCCATCTCCAACCTATCTCTACCACCGATCAACCTGCAGATATATTCACCAAAGCTCTCCATTCTCCTCATTTCACCCAGTTAATTCACAAACTCAAGGTGGTCTCAACACTCCCATCTTGA

Protein sequence

MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYGLKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAISNLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPLDPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSFSFFATSKRSKKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLPS

Homology

[Close]

BLAST of Cmc02g0053561 vs. NCBI nr
Match: KAA0058220.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 716.1 bits (1847), Expect = 1.6e-202
Identity = 361/375 (96.27%), Postives = 362/375 (96.53%), Query Frame = 0


Query: 1   MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
           MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG
Sbjct: 554 MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 613

Query: 61  LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
           LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS
Sbjct: 614 LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 673

Query: 121 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
           NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL
Sbjct: 674 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 733

Query: 181 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF 240
           DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF
Sbjct: 734 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF 793

Query: 241 SFFATSK---RSKKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD 300
           SFFATSK        S  +   TESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD
Sbjct: 794 SFFATSKVLWVMVYSSPPNPLCTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD 853

Query: 301 NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF 360
           NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF
Sbjct: 854 NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF 913

Query: 361 TQLIHKLKVVSTLPS 373
           TQLIHKLKVVSTLPS
Sbjct: 914 TQLIHKLKVVSTLPS 928

[Close]

BLAST of Cmc02g0053561 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 623.6 bits (1607), Expect = 1.1e-174
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 926  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 985

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 986  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1045

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1046 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1105

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1106 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1165

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1166 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1225

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1226 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1285

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1286 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1345

[Close]

BLAST of Cmc02g0053561 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 623.6 bits (1607), Expect = 1.1e-174
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 894  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 953

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 954  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1013

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1014 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1073

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1074 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1133

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1134 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1193

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1194 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1253

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1254 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1313

[Close]

BLAST of Cmc02g0053561 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 623.6 bits (1607), Expect = 1.1e-174
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 926  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 985

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 986  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1045

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1046 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1105

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1106 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1165

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1166 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1225

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1226 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1285

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1286 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1345

[Close]

BLAST of Cmc02g0053561 vs. NCBI nr
Match: TYK12316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK28111.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 623.6 bits (1607), Expect = 1.1e-174
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1   MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
           MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 342 MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 401

Query: 61  LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
           LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 402 LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 461

Query: 121 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
           +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 462 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 521

Query: 181 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
           DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 522 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 581

Query: 241 ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                   S   + F+      S RSKK
Sbjct: 582 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 641

Query: 301 QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
           QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 642 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 701

Query: 361 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
           ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 702 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 761

[Close]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-70
Identity = 162/422 (38.39%), Postives = 226/422 (53.55%), Query Frame = 0


Query: 2    TFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPG--TTPPPQKVCLLHRALY 61
            T +R +L +A  + W + Q+DV N FL GT+ ++VYM  PPG      P  VC L +ALY
Sbjct: 1045 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALY 1104

Query: 62   GLKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAI 121
            GLKQAPRAW+    + +  +GF +S  D++LF  Q    IV +L+YVDD++ITG+D   +
Sbjct: 1105 GLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLL 1164

Query: 122  SNLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTP 181
             N    L + F +KD   L YF G+E    P+G +LSQ +Y  DLL R     +    TP
Sbjct: 1165 HNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTP 1224

Query: 182  LDPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ------------- 241
            + P+ +L+ + G  L DPT YR +VGSL YL  TRPDI+YAV+ +SQ             
Sbjct: 1225 MAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQAL 1284

Query: 242  --------------LWLPLVQFTSLPSFS----------FFAT------------SKRSK 301
                          ++L      SL ++S          + +T            S  SK
Sbjct: 1285 KRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSK 1344

Query: 302  KQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVF 361
            KQ  V RSSTE+EYR++A+ +SE+ W+  LLT++G   T P +++CDN  A  +  N VF
Sbjct: 1345 KQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVF 1404

Query: 362  HERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTL 373
            H R KHI  D HF+R+ +QS  L +  +ST DQ AD  TK L    F     K+ V    
Sbjct: 1405 HSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVP 1464

[Close]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 8.3e-69
Identity = 158/422 (37.44%), Postives = 226/422 (53.55%), Query Frame = 0


Query: 2    TFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPP--PQKVCLLHRALY 61
            T +R +L +A  + W + Q+DV N FL GT+ +EVYM  PPG      P  VC L +A+Y
Sbjct: 1028 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIY 1087

Query: 62   GLKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAI 121
            GLKQAPRAW+    + +  +GF +S  D++LF  Q    I+ +L+YVDD++ITG+D+  +
Sbjct: 1088 GLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLL 1147

Query: 122  SNLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTP 181
             +    L + F +K+  +L YF G+E    P G +LSQ +Y  DLL R     +    TP
Sbjct: 1148 KHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATP 1207

Query: 182  LDPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ------------- 241
            +  + +LT   G  L DPT YR +VGSL YL  TRPD++YAV+ +SQ             
Sbjct: 1208 MATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNAL 1267

Query: 242  --------------LWLPLVQFTSLPSFS----------FFAT------------SKRSK 301
                          ++L      SL ++S          + +T            S  SK
Sbjct: 1268 KRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSK 1327

Query: 302  KQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVF 361
            KQ  V RSSTE+EYR++A+ +SEL W+  LLT++G   + P +++CDN  A  +  N VF
Sbjct: 1328 KQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVF 1387

Query: 362  HERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTL 373
            H R KHI  D HF+R+ +QS  L +  +ST DQ AD  TK L    F     K+ V+   
Sbjct: 1388 HSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

[Close]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 5.0e-50
Identity = 135/415 (32.53%), Postives = 202/415 (48.67%), Query Frame = 0


Query: 5    RSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYGLKQA 64
            R +L++       + QMDVK  FLNGT+ EE+YM+ P G +     VC L++A+YGLKQA
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQA 1044

Query: 65   PRAWFATFNSTITQLGFTSSSHDSTLF--TRQTPNGIVLLLLYVDDMIITGDDSQAISNL 124
             R WF  F   + +  F +SS D  ++   +   N  + +LLYVDD++I   D   ++N 
Sbjct: 1045 ARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNF 1104

Query: 125  QYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPLDP 184
            + YL++ F M DL  + +F G+ I       YLSQ+ Y   +L++    +     TPL  
Sbjct: 1105 KRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPS 1164

Query: 185  NVRLTPFDGVPLDDPTLYRQLVGSLIYLTV-TRPDIAYAVHIV--------SQLWLPLVQ 244
             +     +    D  T  R L+G L+Y+ + TRPD+  AV+I+        S+LW  L +
Sbjct: 1165 KINYELLNS-DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1224

Query: 245  FTS--------------------------------------------LPSFSFFATSKRS 304
                                                              F F      +
Sbjct: 1225 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1284

Query: 305  KKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDV 364
            K+Q+ V+ SSTE+EY AL +A  E LWL++LLT +     +P  ++ DN   I IA+N  
Sbjct: 1285 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1344

[Close]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-47
Identity = 139/412 (33.74%), Postives = 216/412 (52.43%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQK--VCLLHRAL 60
            MT +R++L++AA+    + Q+DVK  FL+G + EE+YM+ P G     +K  VC L+++L
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 61   YGLKQAPRAWFATFNSTI-TQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQ 120
            YGLKQAPR W+  F+S + +Q    + S     F R + N  ++LLLYVDDM+I G D  
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 121  AISNLQYYLIKNFEMKDLGNLSYFPGLEI--SSSPSGYYLSQAKYASDLLNRPGTTDSAT 180
             I+ L+  L K+F+MKDLG      G++I    +    +LSQ KY   +L R    ++  
Sbjct: 1021 LIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKP 1080

Query: 181  FLTPLDPNVRL------TPFDGVPLDDPTLYRQLVGSLIYLTV-TRPDIAYAVHIVSQL- 240
              TPL  +++L      T  +         Y   VGSL+Y  V TRPDIA+AV +VS+  
Sbjct: 1081 VSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFL 1140

Query: 241  ------------WL------------------PLVQ-FTS----------------LPSF 300
                        W+                  P+++ +T                 L +F
Sbjct: 1141 ENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTF 1200

Query: 301  SFFATSKRSKKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCS 353
            S  A S +SK Q  V+ S+TE+EY A  +   E++WL+  L ++G  Q    +++CD+ S
Sbjct: 1201 SGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQS 1260

[Close]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-23
Identity = 71/210 (33.81%), Postives = 106/210 (50.48%), Query Frame = 0


Query: 21  MDVKNVFLNGTIYEEVYMKPPPG--TTPPPQKVCLLHRALYGLKQAPRAWFATFNSTITQ 80
           MDV   FLN T+ E +Y+K PPG      P  V  L+  +YGLKQAP  W    N+T+ +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 81  LGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAISNLQYYLIKNFEMKDLGNL 140
           +GF     +  L+ R T +G + + +YVDD+++     +    ++  L K + MKDLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 141 SYFPGLEISSSPSG-YYLSQAKYASDLLNRPGTTDSATFLTPLDPNVRLTPFDGVPLDDP 200
             F GL I  S +G   LS   Y +   +           TPL  +  L       L D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 201 TLYRQLVGSLIYLTVT-RPDIAYAVHIVSQ 227
           T Y+ +VG L++   T RPDI+Y V ++S+
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSR 210

[Close]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL
Match: A0A5A7UST7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005430 PE=4 SV=1)

HSP 1 Score: 716.1 bits (1847), Expect = 7.7e-203
Identity = 361/375 (96.27%), Postives = 362/375 (96.53%), Query Frame = 0


Query: 1   MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
           MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG
Sbjct: 554 MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 613

Query: 61  LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
           LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS
Sbjct: 614 LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 673

Query: 121 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
           NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL
Sbjct: 674 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 733

Query: 181 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF 240
           DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF
Sbjct: 734 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLPLVQFTSLPSF 793

Query: 241 SFFATSK---RSKKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD 300
           SFFATSK        S  +   TESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD
Sbjct: 794 SFFATSKVLWVMVYSSPPNPLCTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCD 853

Query: 301 NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF 360
           NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF
Sbjct: 854 NCSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHF 913

Query: 361 TQLIHKLKVVSTLPS 373
           TQLIHKLKVVSTLPS
Sbjct: 914 TQLIHKLKVVSTLPS 928

[Close]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.2e-175
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 926  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 985

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 986  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1045

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1046 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1105

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1106 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1165

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1166 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1225

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1226 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1285

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1286 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1345

[Close]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL
Match: A0A5D3DWU7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00160 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.2e-175
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1   MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
           MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 342 MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 401

Query: 61  LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
           LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 402 LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 461

Query: 121 NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
           +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 462 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 521

Query: 181 DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
           DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 522 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 581

Query: 241 ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                   S   + F+      S RSKK
Sbjct: 582 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 641

Query: 301 QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
           QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 642 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 701

Query: 361 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
           ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 702 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 761

[Close]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.2e-175
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 926  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 985

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 986  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1045

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1046 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1105

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1106 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1165

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1166 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1225

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1226 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1285

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1286 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1345

[Close]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.2e-175
Identity = 333/421 (79.10%), Postives = 343/421 (81.47%), Query Frame = 0


Query: 1    MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPPGTTPPPQKVCLLHRALYG 60
            MT VRSLLAIAAAKQW LLQMDVKN FLNGT+ EEVYMKPPPGTTPPPQKVCLL RALYG
Sbjct: 894  MTSVRSLLAIAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYG 953

Query: 61   LKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGDDSQAIS 120
            LKQAPRAWFATF+STITQLGFTSSSHDS LFTRQTPNGIVLLLLYVDDMIITGDD QAIS
Sbjct: 954  LKQAPRAWFATFSSTITQLGFTSSSHDSALFTRQTPNGIVLLLLYVDDMIITGDDPQAIS 1013

Query: 121  NLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSATFLTPL 180
            +LQ YL K+FEMKDLGNL+YF GLEISSS SGYYLSQAKYASDLLNR G TDSATF TPL
Sbjct: 1014 DLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRSGITDSATFSTPL 1073

Query: 181  DPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQLWLP--LVQFT--- 240
            DPNVRLTPFDGVPL+DPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ       + FT   
Sbjct: 1074 DPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVL 1133

Query: 241  ----------------------------------------SLPSFSFF----ATSKRSKK 300
                                                    S   + F+      S RSKK
Sbjct: 1134 RILRYIKGTLGHGLQFSSQSSLVLSGFSDADWAGDPTDRRSTTGYCFYLGDALISWRSKK 1193

Query: 301  QSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIAHNDVFH 360
            QSVVSRSSTESEYRALADATSEL+WLRWLLTDMGAPQTSPTILHCDN SAIQIAHNDVFH
Sbjct: 1194 QSVVSRSSTESEYRALADATSELIWLRWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFH 1253

Query: 361  ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPHFTQLIHKLKVVSTLP 373
            ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSP FTQLIHKLKVVSTLP
Sbjct: 1254 ERTKHIENDCHFVRHHLQSNTLHLQPISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLP 1313

[Close]

BLAST of Cmc02g0053561 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-65
Identity = 150/380 (39.47%), Postives = 206/380 (54.21%), Query Frame = 0


Query: 1   MTFVRSLLAIAAAKQWHLLQMDVKNVFLNGTIYEEVYMKPPP------GTTPPPQKVCLL 60
           +T V+ +LAI+A   + L Q+D+ N FLNG + EE+YMK PP      G + PP  VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 61  HRALYGLKQAPRAWFATFNSTITQLGFTSSSHDSTLFTRQTPNGIVLLLLYVDDMIITGD 120
            +++YGLKQA R WF  F+ T+   GF  S  D T F + T    + +L+YVDD+II  +
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 121 DSQAISNLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYASDLLNRPGTTDSA 180
           +  A+  L+  L   F+++DLG L YF GLEI+ S +G  + Q KYA DLL+  G     
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCK 352

Query: 181 TFLTPLDPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQ-------- 240
               P+DP+V  +   G    D   YR+L+G L+YL +TR DI++AV+ +SQ        
Sbjct: 353 PSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLA 412

Query: 241 ---------------------------LWLPLVQFTSLPSFS-----------FFATSK- 300
                                      + L +    S  S             F  TS  
Sbjct: 413 HQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLI 472

Query: 301 --RSKKQSVVSRSSTESEYRALADATSELLWLRWLLTDMGAPQTSPTILHCDNCSAIQIA 326
             +SKKQ VVS+SS E+EYRAL+ AT E++WL     ++  P + PT+L CDN +AI IA
Sbjct: 473 SWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIA 532

[Close]

BLAST of Cmc02g0053561 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-23
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 102 LLLYVDDMIITGDDSQAISNLQYYLIKNFEMKDLGNLSYFPGLEISSSPSGYYLSQAKYA 161
           LLLYVDD+++TG  +  ++ L + L   F MKDLG + YF G++I + PSG +LSQ KYA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 162 SDLLNRPGTTDSATFLTPLDPNVRLTPFDGVPLDDPTLYRQLVGSLIYLTVTRPDIAYAV 221
             +LN  G  D     TPL P    +        DP+ +R +VG+L YLT+TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 122

Query: 222 HIVSQ 227
           +IV Q
Sbjct: 123 NIVCQ 126

The following BLAST results are available for this feature:

BLAST of Cmc02g0053561 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058220.1	1.6e-202	96.27	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0043149.1	1.1e-174	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065380.1	1.1e-174	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	1.1e-174	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12316.1	1.1e-174	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0053561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.0e-70	38.39	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.3e-69	37.44	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.0e-50	32.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.8e-47	33.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	1.8e-23	33.81	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0053561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UST7	7.7e-203	96.27	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DG18	5.2e-175	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWU7	5.2e-175	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	5.2e-175	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VDW0	5.2e-175	79.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0053561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.7e-65	39.47	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.1e-23	46.40	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..180 e-value: 5.9E-47 score: 160.3
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..163
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 4..163
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 248..355 e-value: 2.34448E-58 score: 184.209
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0053561.1	Cmc02g0053561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding