Cmc02g0052471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0052471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 19911923 .. 19913434 (-)
RNA-Seq Expression	Cmc02g0052471
Synteny	Cmc02g0052471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGAGATAAAAGCCATAAAAAAGAATGATACGTGGGAACTTTCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAAGTGGAGAGATACAAAGCAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCTCCCGTTGCTCGTTTGGAAACCATAAGGTTGTTAATTGCTCTTGCTGCACAAAATAATTGGAAGATCTTTCAAATGGATGTCAAATCGGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTTATTCTGTGAAAGGCCAAGAGGATAAAGTTCTAAAATTGAAGAAGGCATTATACGGATTGAAACAAGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTCGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGATATTCTAGAGAAGTTCAATATGATGAATTCTAAGCCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGGAATTTGTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATATAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACTTTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

mRNA sequence

ATGGATGAAGAGATAAAAGCCATAAAAAAGAATGATACGTGGGAACTTTCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAAGTGGAGAGATACAAAGCAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCTCCCGTTGCTCGTTTGGAAACCATAAGGTTGTTAATTGCTCTTGCTGCACAAAATAATTGGAAGATCTTTCAAATGGATGTCAAATCGGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTTATTCTGTGAAAGGCCAAGAGGATAAAGTTCTAAAATTGAAGAAGGCATTATACGGATTGAAACAAGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTCGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGATATTCTAGAGAAGTTCAATATGATGAATTCTAAGCCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGGAATTTGTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATATAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACTTTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

Coding sequence (CDS)

ATGGATGAAGAGATAAAAGCCATAAAAAAGAATGATACGTGGGAACTTTCTACTCTTCCAAATGGAAAGAAAGCAGTAGGTGTCAAATGGGTGTTCAAGATAAAAAGAAATGAAAAGGGAGAAGTGGAGAGATACAAAGCAAGATTAGTTGCAAAAGGATATTCTCAAAGAAAAGGCATTGATTATGATGAAGTATTTGCTCCCGTTGCTCGTTTGGAAACCATAAGGTTGTTAATTGCTCTTGCTGCACAAAATAATTGGAAGATCTTTCAAATGGATGTCAAATCGGCATTTTTGAATGGATATCTAGAAGAAGAAGTCTACTTGGAACAACCTCCTGGTTATTCTGTGAAAGGCCAAGAGGATAAAGTTCTAAAATTGAAGAAGGCATTATACGGATTGAAACAAGCACCAAGAATGTGGAATAGCAGAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGTCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTCGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTGCAAGTATGTTTGAAGATCTCAAGAAGGCGATGACCCAAGAATTTGAAATGACAGATATAGGGCTAATGTCATATTATCTTGGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGATATTCTAGAGAAGTTCAATATGATGAATTCTAAGCCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGATCCTTCATATTTCAAAAGTTTGGTTGGGAGTTTGAGATATTTGACTTGCACACGACCAGATATTCTTTTCAGCGTTGGATTGGTGAGTCGATTTATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGCTGCAGCTTCATGTGTTTGTCATGCAATTTGGTTAAGGAATTTGTTAAAGACAGTTGGAATTTTGCAAGAAGATCCAACTGTGATTCATATAGACAATAAGTCAACAATTGCTTTAGCAAAGAATCCTGTGTTCCATGATCGTAGCAAACACATTGATACAAGATTTCACTTCATCAGAGATTGCATTTCAAGGAAGGAAGTTCAAGTTGAATATGTGAAGACTGAAGATCAAATTGCAGATATTTTTACGAAGCCACTCAAAGTTAATGTGTTTAACAACTTAAGAACTTTGCTTGGAGTTTTTCAAAACAAAAAAACATGTTTAAGGGAGGATGTTGAAAATTAA

Protein sequence

MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDVEN

Homology

[Close]

BLAST of Cmc02g0052471 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1009.6 bits (2609), Expect = 9.4e-291
Identity = 498/503 (99.01%), Postives = 500/503 (99.40%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 842  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 901

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYL EEVYLEQPPGYSVKGQ
Sbjct: 902  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLVEEVYLEQPPGYSVKGQ 961

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 962  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 1021

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 1022 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 1081

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 1082 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 1141

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 1142 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 1201

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVA ASCVCHA+WLRNLLKTV ILQEDPTVIHID
Sbjct: 1202 FFIGNTAFTWSSKKQPIVTLSTCEAEYVATASCVCHAVWLRNLLKTVEILQEDPTVIHID 1261

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 1262 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 1321

Query: 481  NNLRTLLGVFQNKKTCLREDVEN 504
            NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 1322 NNLRTLLGVFQNKKTCLREDVEN 1344

[Close]

BLAST of Cmc02g0052471 vs. NCBI nr
Match: TYK12247.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1007.3 bits (2603), Expect = 4.7e-290
Identity = 499/503 (99.20%), Postives = 501/503 (99.60%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 520  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 579

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 580  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 639

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 640  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 699

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 700  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 759

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 760  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 819

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 820  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 879

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIHID
Sbjct: 880  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHID 939

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 940  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 999

Query: 481  NNLRTLLGVFQNKKTCLREDVEN 504
            NNLRTLLGVF  KKTCLREDVEN
Sbjct: 1000 NNLRTLLGVFL-KKTCLREDVEN 1021

[Close]

BLAST of Cmc02g0052471 vs. NCBI nr
Match: TYK21979.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 1006.1 bits (2600), Expect = 1.0e-289
Identity = 496/503 (98.61%), Postives = 500/503 (99.40%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60

Query: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
           DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120

Query: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
           EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180

Query: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
           DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGI ISQERYTR+ILE
Sbjct: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILE 240

Query: 241 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
           KFNMMNSKPVATPIETGTKLSKHE+GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 241 KFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300

Query: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
           FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTN RKSTSGYV
Sbjct: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYV 360

Query: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
           FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIH+D
Sbjct: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVD 420

Query: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
           NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVF
Sbjct: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVF 480

Query: 481 NNLRTLLGVFQNKKTCLREDVEN 504
           NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 481 NNLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc02g0052471 vs. NCBI nr
Match: KAA0032986.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 999.2 bits (2582), Expect = 1.3e-287
Identity = 493/503 (98.01%), Postives = 497/503 (98.81%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGE ERYKARLVAKGYSQRKGI
Sbjct: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEEERYKARLVAKGYSQRKGI 60

Query: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
           DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120

Query: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
           EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHS YIKVNGHGDILVVCLYV
Sbjct: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSFYIKVNGHGDILVVCLYV 180

Query: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
           DDLIFT NCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGI ISQERYTR+ILE
Sbjct: 181 DDLIFTRNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILE 240

Query: 241 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
           KFNMMNSKPVATPIETGTKLSKHE+GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 241 KFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300

Query: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
           FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTN RKSTSGYV
Sbjct: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYV 360

Query: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
           FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIH+D
Sbjct: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVD 420

Query: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
           NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVF
Sbjct: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVF 480

Query: 481 NNLRTLLGVFQNKKTCLREDVEN 504
           NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 481 NNLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc02g0052471 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 997.3 bits (2577), Expect = 4.9e-287
Identity = 492/494 (99.60%), Postives = 494/494 (100.00%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 842  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 901

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 902  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 961

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 962  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 1021

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 1022 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 1081

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 1082 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 1141

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 1142 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 1201

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIHID
Sbjct: 1202 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHID 1261

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 1262 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 1321

Query: 481  NNLRTLLGVFQNKK 495
            NNLRTLLGVFQNKK
Sbjct: 1322 NNLRTLLGVFQNKK 1335

[Close]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.8e-114
Identity = 211/497 (42.45%), Postives = 302/497 (60.76%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKG 60
            M  EI A   N TW+L    P     VG +W+F  K N  G + RYKARLVAKGY+QR G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKG 120
            +DY E F+PV +  +IR+++ +A   +W I Q+DV +AFL G L +EVY+ QPPG+  K 
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  QEDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLY 180
            + D V +L+KA+YGLKQAPR W   +  Y L  G++    + SL++   G   I+ + +Y
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGR-SIIYMLVY 1134

Query: 181  VDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDIL 240
            VDD++ TGN   + +    A++Q F + +   + Y+LGIE K+  +G+ +SQ RYT D+L
Sbjct: 1135 VDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLL 1194

Query: 241  EKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVS 300
             + NM+ +KPVATP+ T  KL+ H      DP+ ++ +VGSL+YL  TRPD+ ++V  +S
Sbjct: 1195 ARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLS 1254

Query: 301  RFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGY 360
            ++M  PT  H    KR+LRYL GT D+G+F        L  Y D+DWAGDT+D  ST+GY
Sbjct: 1255 QYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGY 1314

Query: 361  VFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHI 420
            + ++G+   +WSSKKQ  V  S+ EAEY + A+      W+ +LL  +GI    P VI+ 
Sbjct: 1315 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYC 1374

Query: 421  DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNV 480
            DN     L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TKPL    
Sbjct: 1375 DNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVA 1434

Query: 481  FNNLRTLLGVFQNKKTC 497
            F N    +GV +   +C
Sbjct: 1435 FQNFSRKIGVIKVPPSC 1450

[Close]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 4.8e-112
Identity = 209/490 (42.65%), Postives = 298/490 (60.82%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWEL-STLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKG 60
            M  EI A   N TW+L    P+    VG +W+F  K N  G + RYKARLVAKGY+QR G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKG 120
            +DY E F+PV +  +IR+++ +A   +W I Q+DV +AFL G L ++VY+ QPPG+  K 
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  QEDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLY 180
            + + V KL+KALYGLKQAPR W   +  Y L  G++    + SL++   G   I+ + +Y
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGK-SIVYMLVY 1151

Query: 181  VDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDIL 240
            VDD++ TGN  ++  +    ++Q F + D   + Y+LGIE K+   G+ +SQ RY  D+L
Sbjct: 1152 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1211

Query: 241  EKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVS 300
             + NM+ +KPV TP+    KLS +      DP+ ++ +VGSL+YL  TRPDI ++V  +S
Sbjct: 1212 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1271

Query: 301  RFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGY 360
            +FM  PT  HL+  KRILRYL GT ++G+F        L  Y D+DWAGD +D  ST+GY
Sbjct: 1272 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGY 1331

Query: 361  VFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHI 420
            + ++G+   +WSSKKQ  V  S+ EAEY + A+      W+ +LL  +GI    P VI+ 
Sbjct: 1332 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1391

Query: 421  DNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNV 480
            DN     L  NPVFH R KHI   +HFIR+ +    ++V +V T DQ+AD  TKPL    
Sbjct: 1392 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1451

Query: 481  FNNLRTLLGV 490
            F N  + +GV
Sbjct: 1452 FQNFASKIGV 1460

[Close]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 4.1e-111
Identity = 208/501 (41.52%), Postives = 325/501 (64.87%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            M EE+++++KN T++L  LP GK+ +  KWVFK+K++   ++ RYKARLV KG+ Q+KGI
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            D+DE+F+PV ++ +IR +++LAA  + ++ Q+DVK+AFL+G LEEE+Y+EQP G+ V G+
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            +  V KL K+LYGLKQAPR W  + + +     YL+   +  +Y K     + +++ LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEV--KQSEEGIFISQERYTRDI 240
            DD++  G    +   LK  +++ F+M D+G     LG+++  +++   +++SQE+Y   +
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

Query: 241  LEKFNMMNSKPVATPIETGTKLSKH------EEGDDVDPSYFKSLVGSLRY-LTCTRPDI 300
            LE+FNM N+KPV+TP+    KLSK       EE  ++    + S VGSL Y + CTRPDI
Sbjct: 1070 LERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDI 1129

Query: 301  LFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTN 360
              +VG+VSRF+E+P   H +  K ILRYLRGT    L +  S    L+GY D+D AGD +
Sbjct: 1130 AHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDID 1189

Query: 361  DRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQ 420
            +RKS++GY+F     A +W SK Q  V LST EAEY+AA       IWL+  L+ +G+ Q
Sbjct: 1190 NRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ 1249

Query: 421  EDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIF 480
            ++  V++ D++S I L+KN ++H R+KHID R+H+IR+ +  + ++V  + T +  AD+ 
Sbjct: 1250 KE-YVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADML 1309

Query: 481  TKPLKVNVFNNLRTLLGVFQN 493
            TK +  N F   + L+G+  N
Sbjct: 1310 TKVVPRNKFELCKELVGMHSN 1328

[Close]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 377.5 bits (968), Expect = 2.4e-103
Identity = 199/500 (39.80%), Postives = 303/500 (60.60%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            ++ E+ A K N+TW ++  P  K  V  +WVF +K NE G   RYKARLVA+G++Q+  I
Sbjct: 910  INTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQI 969

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DY+E FAPVAR+ + R +++L  Q N K+ QMDVK+AFLNG L+EE+Y+  P G S    
Sbjct: 970  DYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISC--N 1029

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGH-GDILVVCLY 180
             D V KL KA+YGLKQA R W     +   +  ++    +  +YI   G+  + + V LY
Sbjct: 1030 SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLY 1089

Query: 181  VDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDIL 240
            VDD++      +   + K+ + ++F MTD+  + +++GI ++  E+ I++SQ  Y + IL
Sbjct: 1090 VDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKIL 1149

Query: 241  EKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRY-LTCTRPDILFSVGLV 300
             KFNM N   V+TP+ +          +D + +  +SL+G L Y + CTRPD+  +V ++
Sbjct: 1150 SKFNMENCNAVSTPLPSKINYELLNSDEDCN-TPCRSLIGCLMYIMLCTRPDLTTAVNIL 1209

Query: 301  SRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEF--KLEGYCDSDWAGDTNDRKST 360
            SR+     +   +  KR+LRYL+GT+D  L +  +  F  K+ GY DSDWAG   DRKST
Sbjct: 1210 SRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKST 1269

Query: 361  SGYVF-FIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPT 420
            +GY+F         W++K+Q  V  S+ EAEY+A    V  A+WL+ LL ++ I  E+P 
Sbjct: 1270 TGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPI 1329

Query: 421  VIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPL 480
             I+ DN+  I++A NP  H R+KHID ++HF R+ +    + +EY+ TE+Q+ADIFTKPL
Sbjct: 1330 KIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1389

Query: 481  KVNVFNNLRTLLGVFQNKKT 496
                F  LR  LG+ Q+ ++
Sbjct: 1390 PAARFVELRDKLGLLQDDQS 1406

[Close]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-44
Identity = 87/226 (38.50%), Postives = 139/226 (61.50%), Query Frame = 0


Query: 174 LVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER 233
           + + LYVDD++ TG+  ++   L   ++  F M D+G + Y+LGI++K    G+F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 234 YTRDILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILF 293
           Y   IL    M++ KP++TP+      S        DPS F+S+VG+L+YLT TRPDI +
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISY 120

Query: 294 SVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDR 353
           +V +V + M  PT     + KR+LRY++GT+ +GL+   + +  ++ +CDSDWAG T+ R
Sbjct: 121 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 180

Query: 354 KSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIW 400
           +ST+G+  F+G    +WS+K+QP V+ S+ E EY A A       W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL
Match: A0A5A7U3F3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00420 PE=4 SV=1)

HSP 1 Score: 1009.6 bits (2609), Expect = 4.6e-291
Identity = 498/503 (99.01%), Postives = 500/503 (99.40%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 842  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 901

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYL EEVYLEQPPGYSVKGQ
Sbjct: 902  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLVEEVYLEQPPGYSVKGQ 961

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 962  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 1021

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 1022 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 1081

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 1082 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 1141

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 1142 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 1201

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVA ASCVCHA+WLRNLLKTV ILQEDPTVIHID
Sbjct: 1202 FFIGNTAFTWSSKKQPIVTLSTCEAEYVATASCVCHAVWLRNLLKTVEILQEDPTVIHID 1261

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 1262 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 1321

Query: 481  NNLRTLLGVFQNKKTCLREDVEN 504
            NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 1322 NNLRTLLGVFQNKKTCLREDVEN 1344

[Close]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL
Match: A0A5D3CJX7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00560 PE=4 SV=1)

HSP 1 Score: 1007.3 bits (2603), Expect = 2.3e-290
Identity = 499/503 (99.20%), Postives = 501/503 (99.60%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 520  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 579

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 580  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 639

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 640  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 699

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 700  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 759

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 760  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 819

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 820  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 879

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIHID
Sbjct: 880  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHID 939

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 940  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 999

Query: 481  NNLRTLLGVFQNKKTCLREDVEN 504
            NNLRTLLGVF  KKTCLREDVEN
Sbjct: 1000 NNLRTLLGVFL-KKTCLREDVEN 1021

[Close]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL
Match: A0A5D3DF53 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00090 PE=4 SV=1)

HSP 1 Score: 1006.1 bits (2600), Expect = 5.1e-290
Identity = 496/503 (98.61%), Postives = 500/503 (99.40%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60

Query: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
           DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120

Query: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
           EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180

Query: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
           DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGI ISQERYTR+ILE
Sbjct: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILE 240

Query: 241 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
           KFNMMNSKPVATPIETGTKLSKHE+GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 241 KFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300

Query: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
           FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTN RKSTSGYV
Sbjct: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYV 360

Query: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
           FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIH+D
Sbjct: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVD 420

Query: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
           NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVF
Sbjct: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVF 480

Query: 481 NNLRTLLGVFQNKKTCLREDVEN 504
           NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 481 NNLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL
Match: A0A5A7SSL5 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00730 PE=4 SV=1)

HSP 1 Score: 999.2 bits (2582), Expect = 6.2e-288
Identity = 493/503 (98.01%), Postives = 497/503 (98.81%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGE ERYKARLVAKGYSQRKGI
Sbjct: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEEERYKARLVAKGYSQRKGI 60

Query: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
           DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120

Query: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
           EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHS YIKVNGHGDILVVCLYV
Sbjct: 121 EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSFYIKVNGHGDILVVCLYV 180

Query: 181 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
           DDLIFT NCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGI ISQERYTR+ILE
Sbjct: 181 DDLIFTRNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILE 240

Query: 241 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
           KFNMMNSKPVATPIETGTKLSKHE+GDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 241 KFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300

Query: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
           FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTN RKSTSGYV
Sbjct: 301 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYV 360

Query: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
           FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIH+D
Sbjct: 361 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVD 420

Query: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
           NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADI TKPLKVNVF
Sbjct: 421 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVF 480

Query: 481 NNLRTLLGVFQNKKTCLREDVEN 504
           NNLRTLLGVFQNKKTCLREDVEN
Sbjct: 481 NNLRTLLGVFQNKKTCLREDVEN 503

[Close]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 997.3 bits (2577), Expect = 2.3e-287
Identity = 492/494 (99.60%), Postives = 494/494 (100.00%), Query Frame = 0


Query: 1    MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
            MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI
Sbjct: 842  MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 901

Query: 61   DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
            DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ
Sbjct: 902  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 961

Query: 121  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 180
            EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV
Sbjct: 962  EDKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYV 1021

Query: 181  DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILE 240
            DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR+ILE
Sbjct: 1022 DDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILE 1081

Query: 241  KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 300
            KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR
Sbjct: 1082 KFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSR 1141

Query: 301  FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 360
            FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV
Sbjct: 1142 FMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYV 1201

Query: 361  FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTVIHID 420
            FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHA+WLRNLLKTVGILQEDPTVIHID
Sbjct: 1202 FFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHID 1261

Query: 421  NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 480
            NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF
Sbjct: 1262 NKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADIFTKPLKVNVF 1321

Query: 481  NNLRTLLGVFQNKK 495
            NNLRTLLGVFQNKK
Sbjct: 1322 NNLRTLLGVFQNKK 1335

[Close]

BLAST of Cmc02g0052471 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 369.8 bits (948), Expect = 3.5e-102
Identity = 178/453 (39.29%), Postives = 288/453 (63.58%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           MD+EI A++   TWE+ TLP  KK +G KWV+KIK N  G +ERYKARLVAKGY+Q++GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQ 120
           D+ E F+PV +L +++L++A++A  N+ + Q+D+ +AFLNG L+EE+Y++ PPGY+ +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----DKVLKLKKALYGLKQAPRMWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVV 180
           +    + V  LKK++YGLKQA R W  + +   +  G+++   +H+ ++K+      L V
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITA-TLFLCV 281

Query: 181 CLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTR 240
            +YVDD+I   N  +  ++LK  +   F++ D+G + Y+LG+E+ +S  GI I Q +Y  
Sbjct: 282 LVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYAL 341

Query: 241 DILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVG 300
           D+L++  ++  KP + P++     S H  GD VD   ++ L+G L YL  TR DI F+V 
Sbjct: 342 DLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVN 401

Query: 301 LVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKST 360
            +S+F E+P   H +   +IL Y++GT+  GLFYSS  E +L+ + D+ +    + R+ST
Sbjct: 402 KLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRST 461

Query: 361 SGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIWLRNLLKTVGILQEDPTV 420
           +GY  F+G +  +W SKKQ +V+ S+ EAEY A +      +WL    + + +    PT+
Sbjct: 462 NGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTL 521

Query: 421 IHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRD 450
           +  DN + I +A N VFH+R+KHI++  H +R+
Sbjct: 522 LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc02g0052471 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 8.0e-46
Identity = 87/226 (38.50%), Postives = 139/226 (61.50%), Query Frame = 0


Query: 174 LVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQER 233
           + + LYVDD++ TG+  ++   L   ++  F M D+G + Y+LGI++K    G+F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 234 YTRDILEKFNMMNSKPVATPIETGTKLSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILF 293
           Y   IL    M++ KP++TP+      S        DPS F+S+VG+L+YLT TRPDI +
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISY 120

Query: 294 SVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDR 353
           +V +V + M  PT     + KR+LRY++GT+ +GL+   + +  ++ +CDSDWAG T+ R
Sbjct: 121 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 180

Query: 354 KSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAIW 400
           +ST+G+  F+G    +WS+K+QP V+ S+ E EY A A       W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc02g0052471 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGI 60
           M EE+ A+ +N TW L   P  +  +G KWVFK K +  G ++R KARLVAKG+ Q +GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYDEVFAPVARLETIRLLIALAAQ 85
            + E ++PV R  TIR ++ +A Q
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cmc02g0052471 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-13
Identity = 30/77 (38.96%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 283 YLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYC 342
           YLT TRPD+ F+V  +S+F  +  T  ++   ++L Y++GT+  GLFYS++ + +L+ + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 343 DSDWAGDTNDRKSTSGY 360
           DSDWA   + R+S +G+
Sbjct: 62  DSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc02g0052471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047979.1	9.4e-291	99.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12247.1	4.7e-290	99.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21979.1	1.0e-289	98.61	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032986.1	1.3e-287	98.01	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
TYK18362.1	4.9e-287	99.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0052471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.8e-114	42.45	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.8e-112	42.65	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	4.1e-111	41.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.4e-103	39.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	1.1e-44	38.50	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0052471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3F3	4.6e-291	99.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CJX7	2.3e-290	99.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DF53	5.1e-290	98.61	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SSL5	6.2e-288	98.01	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7V3X9	2.3e-287	99.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0052471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.5e-102	39.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	8.0e-46	38.50	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.1e-14	45.24	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	4.0e-13	38.96	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..254 e-value: 2.8E-90 score: 302.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..386
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 339..475 e-value: 5.75962E-86 score: 259.323
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..445

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0052471.1	Cmc02g0052471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding