Cmc02g0052241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0052241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr02: 19497403 .. 19497852 (-)
RNA-Seq Expression	Cmc02g0052241
Synteny	Cmc02g0052241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATTATGAGTTGTACACGTCCTGATATAGCGTATGCTGTAAACAAGTTAAGTTGCTATACAAGTTATCGAGGTCAAGATAATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAGCATACTAAAAATTATGGATTACACTATACTTGTTATCCTGCTGTACTTGAAGGTTATAGTGATGCTAACTGGATATCAAGTACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCGGTAAGGCTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCTATAATGGAATCTCAATTTATAGCTCTAGAAAAGGCTGGGGAAGAAGCAGAACGACTTCGTAATTTTTTAGAAGATATTCCTAATTGGTCTAAACTGGTGCCTACAATATGTATACATAGTTATAGCGAGGCAACTATTGGAAGGGCATGA

mRNA sequence

ATGTATATTATGAGTTGTACACGTCCTGATATAGCGTATGCTGTAAACAAGTTAAGTTGCTATACAAGTTATCGAGGTCAAGATAATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAGCATACTAAAAATTATGGATTACACTATACTTGTTATCCTGCTGTACTTGAAGGTTATAGTGATGCTAACTGGATATCAAGTACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCGGTAAGGCTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCTATAATGGAATCTCAATTTATAGCTCTAGAAAAGGCTGGGGAAGAAGCAGAACGACTTCGTAATTTTTTAGAAGATATTCCTAATTGGTCTAAACTGGTGCCTACAATATGTATACATAGTTATAGCGAGGCAACTATTGGAAGGGCATGA

Coding sequence (CDS)

ATGTATATTATGAGTTGTACACGTCCTGATATAGCGTATGCTGTAAACAAGTTAAGTTGCTATACAAGTTATCGAGGTCAAGATAATTGGAAAGCTATCTTGAGAATTTTAGGATACTTAAAGCATACTAAAAATTATGGATTACACTATACTTGTTATCCTGCTGTACTTGAAGGTTATAGTGATGCTAACTGGATATCAAGTACTAAAGACTCCAAATCCACAAGTGGTTACATTTTTACCCTTGGCGGTAAGGCTGTATCTTGGAAATCTTCCAAACAAACATGTATAGCACGATCTATAATGGAATCTCAATTTATAGCTCTAGAAAAGGCTGGGGAAGAAGCAGAACGACTTCGTAATTTTTTAGAAGATATTCCTAATTGGTCTAAACTGGTGCCTACAATATGTATACATAGTTATAGCGAGGCAACTATTGGAAGGGCATGA

Protein sequence

MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGYSDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLRNFLEDIPNWSKLVPTICIHSYSEATIGRA

Homology

[Close]

BLAST of Cmc02g0052241 vs. NCBI nr
Match: RVW87556.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 115/149 (77.18%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MY+M+CTRPDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 1   MYVMNCTRPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 60

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           SDANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 61  SDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 120

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           NFLEDIPNWSK VP ICIH  S++ IGRA
Sbjct: 121 NFLEDIPNWSKPVPAICIHCDSQSAIGRA 149

[Close]

BLAST of Cmc02g0052241 vs. NCBI nr
Match: RVW84500.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 114/149 (76.51%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MY+M+CTRPDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 1   MYVMNCTRPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 60

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           +DANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 61  NDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 120

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           NFLEDIPNWSK VP ICIH  S+  IGRA
Sbjct: 121 NFLEDIPNWSKPVPAICIHCDSQLAIGRA 149

[Close]

BLAST of Cmc02g0052241 vs. NCBI nr
Match: RVW67960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 113/149 (75.84%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1    MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
            MY+M+CT PDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 953  MYVMNCTGPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 1012

Query: 61   SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
            SDANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 1013 SDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 1072

Query: 121  NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
            NFLEDIPNWSK V  ICIH  S++ IGRA
Sbjct: 1073 NFLEDIPNWSKPVSAICIHCDSQSAIGRA 1101

[Close]

BLAST of Cmc02g0052241 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/139 (83.45%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 11  IAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGYSDANWISSTK 70
           +AYA++KLS YTS  GQD+WKAILRIL YLKHTKNYGLHY+CYPAVLEGYSDANWISSTK
Sbjct: 426 LAYAISKLSRYTSNPGQDHWKAILRILRYLKHTKNYGLHYSCYPAVLEGYSDANWISSTK 485

Query: 71  DSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLRNFLEDIPNWS 130
           DSKSTSGYIF LGG AVSWKSSKQTCIA+S MES+FIAL+KAGEEAE LRNFLE I NWS
Sbjct: 486 DSKSTSGYIFILGGGAVSWKSSKQTCIAQSTMESEFIALDKAGEEAEWLRNFLEGILNWS 545

Query: 131 KLVPTICIHSYSEATIGRA 150
           K VP ICIHS S+A IGRA
Sbjct: 546 KPVPAICIHSDSQAAIGRA 564

[Close]

BLAST of Cmc02g0052241 vs. NCBI nr
Match: RVX00859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 234.2 bits (596), Expect = 7.4e-58
Identity = 112/149 (75.17%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1    MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
            MY+MSCTRPDIAYAV KLS YTS  G  +W+ I+R+L YL+ T++YGLHYT YPAVLEGY
Sbjct: 1086 MYLMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGY 1145

Query: 61   SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
            SDANWIS+ KDSKS SGY+FTLGG AVSWKSSKQT IARS MES+FIAL+K GEEAE LR
Sbjct: 1146 SDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQTVIARSTMESEFIALDKCGEEAEWLR 1205

Query: 121  NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
            +FLEDIP WSK VP ICIH YS++ IGRA
Sbjct: 1206 HFLEDIPRWSKPVPPICIHCYSQSAIGRA 1234

[Close]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.8e-22
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYT-CYPAVLEG 60
           MY+M  TRPD+A AV  LS + S     +W+A+ R+L YL+ T+ YGL +T    A L G
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YSDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEA 117
           YSDA+W    +  +STSGY+F L G  VSW+S KQ  +A S  E +++AL +A +EA
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

[Close]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 1    MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
            MY M CTRPDIA+AV  +S +    G+++W+A+  IL YL+ T    L +     +L+GY
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGY 1178

Query: 61   SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
            +DA+      + KS++GY+FT  G A+SW+S  Q C+A S  E+++IA  + G+E   L+
Sbjct: 1179 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1238

Query: 121  NFLEDI 127
             FL+++
Sbjct: 1239 RFLQEL 1244

[Close]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 4    MSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAV-LEGYSD 63
            ++ TRPD++YAVN+LS Y      D+W A+ R+L YL  T ++G+       + L  YSD
Sbjct: 1238 LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSD 1297

Query: 64   ANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLRNF 123
            A+W   T D  ST+GYI  LG   +SW S KQ  + RS  E+++ ++     E + + + 
Sbjct: 1298 ADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSL 1357

Query: 124  LEDI 127
            L ++
Sbjct: 1358 LTEL 1361

[Close]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-16
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 1    MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHY---TCYPAVL 60
            MYIM CTRPD+  AVN LS Y+S    + W+ + R+L YLK T +  L +     +   +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   EGYSDANWISSTKDSKSTSGYIFTL-GGKAVSWKSSKQTCIARSIMESQFIALEKAGEEA 120
             GY D++W  S  D KST+GY+F +     + W + +Q  +A S  E++++AL +A  EA
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  ERLRNFLEDI 127
              L+  L  I
Sbjct: 1309 LWLKFLLTSI 1318

[Close]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.0e-15
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 4    MSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAV-LEGYSD 63
            ++ TRPDI+YAVN+LS +     +++ +A+ RIL YL  T N+G+       + L  YSD
Sbjct: 1255 LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSD 1314

Query: 64   ANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLRNF 123
            A+W     D  ST+GYI  LG   +SW S KQ  + RS  E+++ ++     E + + + 
Sbjct: 1315 ADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSL 1374

Query: 124  LEDI 127
            L ++
Sbjct: 1375 LTEL 1378

[Close]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL
Match: A0A438HSX0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3436 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 115/149 (77.18%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MY+M+CTRPDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 1   MYVMNCTRPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 60

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           SDANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 61  SDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 120

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           NFLEDIPNWSK VP ICIH  S++ IGRA
Sbjct: 121 NFLEDIPNWSKPVPAICIHCDSQSAIGRA 149

[Close]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL
Match: A0A438HJ39 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1945 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.9e-62
Identity = 114/149 (76.51%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MY+M+CTRPDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 1   MYVMNCTRPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 60

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           +DANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 61  NDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 120

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           NFLEDIPNWSK VP ICIH  S+  IGRA
Sbjct: 121 NFLEDIPNWSKPVPAICIHCDSQLAIGRA 149

[Close]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL
Match: A0A438G6X1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1536 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 113/149 (75.84%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1    MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
            MY+M+CT PDIAY+V+KLS +TS  G+++WK+I+R+LGYLK+T+NYGLH+T YPAVLEGY
Sbjct: 953  MYVMNCTGPDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLHFTRYPAVLEGY 1012

Query: 61   SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
            SDANWIS +KDSKSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIA++KAGEEAE LR
Sbjct: 1013 SDANWISDSKDSKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIAIDKAGEEAEWLR 1072

Query: 121  NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
            NFLEDIPNWSK V  ICIH  S++ IGRA
Sbjct: 1073 NFLEDIPNWSKPVSAICIHCDSQSAIGRA 1101

[Close]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL
Match: A0A2N9IDC7 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49793 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MYIM+CTRPDIAYAV+KLS YTS  G+D+WKAI+R+L YLK+T NYG+HYT YPAVLEGY
Sbjct: 805 MYIMNCTRPDIAYAVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGY 864

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           SDANWIS T D+KSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIAL+KAGEEAE LR
Sbjct: 865 SDANWISDTNDTKSTSGYVFTLGGVAVSWKSSKQTCIARSTMESEFIALDKAGEEAEWLR 924

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           +FLED+P W+K VP ICIH  S++ IGRA
Sbjct: 925 HFLEDMPMWTKPVPPICIHCDSQSAIGRA 953

[Close]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL
Match: A0A2N9GUH4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30816 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 114/149 (76.51%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MYIMSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAVLEGY 60
           MYIM+CTRPDIAY+V+KLS YTS  G+D+WKAI+R+L YLK+T NYG+HYT YPAVLEGY
Sbjct: 522 MYIMNCTRPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYTLNYGVHYTRYPAVLEGY 581

Query: 61  SDANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLR 120
           SDANWIS T D+KSTSGY+FTLGG AVSWKSSKQTCIARS MES+FIAL+KAGEEAE LR
Sbjct: 582 SDANWISDTNDTKSTSGYVFTLGGAAVSWKSSKQTCIARSTMESEFIALDKAGEEAEWLR 641

Query: 121 NFLEDIPNWSKLVPTICIHSYSEATIGRA 150
           +FLED+P W+K VP ICIH  S++ IGRA
Sbjct: 642 HFLEDMPMWTKPVPPICIHCDSQSAIGRA 670

[Close]

BLAST of Cmc02g0052241 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-15
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 4   MSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAV-LEGYSD 63
           +  TR DI++AVNKLS ++      + +A+++IL Y+K T   GL Y+    + L+ +SD
Sbjct: 388 LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSD 447

Query: 64  ANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEEAERLRNF 123
           A++ S     +ST+GY   LG   +SWKS KQ  +++S  E+++ AL  A +E   L  F
Sbjct: 448 ASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQF 507

Query: 124 LEDI 127
             ++
Sbjct: 508 FREL 511

[Close]

BLAST of Cmc02g0052241 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-09
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 4   MSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLH-YTCYPAVLEGYSD 63
           ++ TRPDI+YAVN +          ++  + R+L Y+K T  +GL+ +      ++ + D
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 169

Query: 64  ANWISSTKDSKSTSGYIFTLGGKAVSWKSSKQTCIARSIMESQFIALEKAGEE 116
           ++W   T   +ST+G+   LG   +SW + +Q  ++RS  E+++ AL     E
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

[Close]

BLAST of Cmc02g0052241 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.2 bits (121), Expect = 8.2e-07
Identity = 24/76 (31.58%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 4  MSCTRPDIAYAVNKLSCYTSYRGQDNWKAILRILGYLKHTKNYGLHYTCYPAV-LEGYSD 63
          ++ TRPD+ +AVN+LS ++S       +A+ ++L Y+K T   GL Y+    + L+ ++D
Sbjct: 3  LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62

Query: 64 ANWISSTKDSKSTSGY 79
          ++W S     +S +G+
Sbjct: 63 SDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc02g0052241 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW87556.1	3.8e-62	77.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW84500.1	1.4e-61	76.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW67960.1	2.1e-60	75.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAA0042920.1	1.1e-58	83.45	pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ...	[more]
RVX00859.1	7.4e-58	75.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc02g0052241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	8.8e-22	46.15	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	3.4e-21	39.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.1e-16	36.29	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	9.5e-16	37.69	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	8.0e-15	35.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc02g0052241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HSX0	1.8e-62	77.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HJ39	6.9e-62	76.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438G6X1	1.0e-60	75.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9IDC7	2.2e-60	77.18	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9GUH4	3.8e-60	76.51	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Cmc02g0052241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.3e-15	35.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.0e-09	29.20	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	8.2e-07	31.58	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 55..149
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 55..149
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 58..146 e-value: 4.95052E-23 score: 85.9829

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0052241.1	Cmc02g0052241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0015074	DNA integration
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0015031	protein transport
biological_process	GO:0006508	proteolysis
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding