Cmc02g0052101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0052101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 19195495 .. 19195866 (-)
RNA-Seq Expression	Cmc02g0052101
Synteny	Cmc02g0052101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATCTTTGGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTTAACTACTTTCTTGGCCTTGAAGTCTCTCGACGCTCAGACGGGTATTTATTGTCTCAAGCTAAATATGTCTCTGATCTTTTAGTTCGTTCAAGAATCACTGACTCTAACACAACTTCAATGCCGTTAGATCCCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTTGTTGGCAGTCTCATCTATCTAACAATGACCCGCCCAGACATTGCATATGCTGTTCATATTGTTAGTCAAATTATGGCTGCTCCTTGA

mRNA sequence

ATGATTATCTTTGGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTTAACTACTTTCTTGGCCTTGAAGTCTCTCGACGCTCAGACGGGTATTTATTGTCTCAAGCTAAATATGTCTCTGATCTTTTAGTTCGTTCAAGAATCACTGACTCTAACACAACTTCAATGCCGTTAGATCCCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTTGTTGGCAGTCTCATCTATCTAACAATGACCCGCCCAGACATTGCATATGCTGTTCATATTGTTAGTCAAATTATGGCTGCTCCTTGA

Coding sequence (CDS)

ATGATTATCTTTGGTAATGATCCACAGGCCATATTCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTTGGGTCTCTTAACTACTTTCTTGGCCTTGAAGTCTCTCGACGCTCAGACGGGTATTTATTGTCTCAAGCTAAATATGTCTCTGATCTTTTAGTTCGTTCAAGAATCACTGACTCTAACACAACTTCAATGCCGTTAGATCCCAATGTTCATTTGACCCCTTATGATGGTGTTCCTCTTGAAGATGTCAGTCTGTATCGGCAACTTGTTGGCAGTCTCATCTATCTAACAATGACCCGCCCAGACATTGCATATGCTGTTCATATTGTTAGTCAAATTATGGCTGCTCCTTGA

Protein sequence

MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRSRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIMAAP

Homology

[Close]

BLAST of Cmc02g0052101 vs. NCBI nr
Match: KAA0058546.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 114/123 (92.68%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 323 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 382

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNTTS PLDPNVHLTPYDGVPL+DVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 383 GITDSNTTSTPLDPNVHLTPYDGVPLKDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 442

Query: 121 AAP 124
           AAP
Sbjct: 443 AAP 445

[Close]

BLAST of Cmc02g0052101 vs. NCBI nr
Match: KAA0054647.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 7.4e-56
Identity = 114/123 (92.68%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 862 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 922 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121 AAP 124
           AAP
Sbjct: 982 AAP 984

[Close]

BLAST of Cmc02g0052101 vs. NCBI nr
Match: KAA0064060.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.2e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1    MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
            MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 913  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 972

Query: 61   RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
             ITDSNT S PLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 973  GITDSNTASTPLDPNVHLTPYDGVPLEEVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1032

Query: 121  AAP 124
            AAP
Sbjct: 1033 AAP 1035

[Close]

BLAST of Cmc02g0052101 vs. NCBI nr
Match: KAA0052097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.2e-55
Identity = 113/123 (91.87%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 874 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 933

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAY VHIVSQ M
Sbjct: 934 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYVVHIVSQFM 993

Query: 121 AAP 124
           AAP
Sbjct: 994 AAP 996

[Close]

BLAST of Cmc02g0052101 vs. NCBI nr
Match: KAA0060225.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRS+GYLLSQAKY SDLL RS
Sbjct: 876 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSNGYLLSQAKYASDLLARS 935

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 936 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 995

Query: 121 AAP 124
           AAP
Sbjct: 996 AAP 998

[Close]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 1    MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
            ++I GNDP  + +    L Q F +KD   L+YFLG+E  R   G  LSQ +Y+ DLL R+
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
             +  +   + P+ P+  L+ Y G  L D + YR +VGSL YL  TRPDI+YAV+ +SQ M
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273

Query: 121  AAP 124
              P
Sbjct: 1274 HMP 1276

[Close]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-17
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 1    MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
            ++I GND   +      L Q F +K+   L+YFLG+E  R   G  LSQ +Y  DLL R+
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
             +  +   + P+  +  LT + G  L D + YR +VGSL YL  TRPD++YAV+ +SQ M
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1256

Query: 121  AAP 124
              P
Sbjct: 1257 HMP 1259

[Close]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-14
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           +++ G+    +  L   L   F MKDLG ++YFLG+++     G  LSQ KY   +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            + D    S PL   ++ +        D S +R +VG+L YLT+TRPDI+YAV+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAP 124
             P
Sbjct: 130 HEP 131

[Close]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-09
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1    MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEV--SRRSDGYLLSQAKYVSDLLV 60
            M+I G D   I  L+  L + F+MKDLG     LG+++   R S    LSQ KY+  +L 
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   RSRITDSNTTSMPLDPNVHL-------TPYDGVPLEDVSLYRQLVGSLIY-LTMTRPDIA 120
            R  + ++   S PL  ++ L       T  +   +  V  Y   VGSL+Y +  TRPDIA
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP-YSSAVGSLMYAMVCTRPDIA 1131

Query: 121  YAVHIVSQIMAAP 124
            +AV +VS+ +  P
Sbjct: 1132 HAVGVVSRFLENP 1143

[Close]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 37/125 (29.60%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYL-LSQAKYVSDLLVR 60
           +++    P+    ++  L + + MKDLG ++ FLGL + + S+G + LS   Y++     
Sbjct: 91  LLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASE 150

Query: 61  SRITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMT-RPDIAYAVHIVSQ 120
           S I     T  PL  +  L       L+D++ Y+ +VG L++   T RPDI+Y V ++S+
Sbjct: 151 SEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSR 210

Query: 121 IMAAP 124
            +  P
Sbjct: 211 FLREP 215

[Close]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL
Match: A0A5A7UWJ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00130 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 114/123 (92.68%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 323 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 382

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNTTS PLDPNVHLTPYDGVPL+DVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 383 GITDSNTTSTPLDPNVHLTPYDGVPLKDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 442

Query: 121 AAP 124
           AAP
Sbjct: 443 AAP 445

[Close]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL
Match: A0A5A7UJ79 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004570 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.6e-56
Identity = 114/123 (92.68%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 862 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 922 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121 AAP 124
           AAP
Sbjct: 982 AAP 984

[Close]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL
Match: A0A5A7UCC7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00790 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 113/123 (91.87%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 874 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 933

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAY VHIVSQ M
Sbjct: 934 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYVVHIVSQFM 993

Query: 121 AAP 124
           AAP
Sbjct: 994 AAP 996

[Close]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL
Match: A0A5A7V9Z8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00670 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1    MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
            MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKY SDLL RS
Sbjct: 913  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 972

Query: 61   RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
             ITDSNT S PLDPNVHLTPYDGVPLE+VSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 973  GITDSNTASTPLDPNVHLTPYDGVPLEEVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1032

Query: 121  AAP 124
            AAP
Sbjct: 1033 AAP 1035

[Close]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL
Match: A0A5A7V2X4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold386G00530 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           MII GNDPQAI DLQHYLGQHFEMKDLGSLNYFLGLEVSRRS+GYLLSQAKY SDLL RS
Sbjct: 876 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSNGYLLSQAKYASDLLARS 935

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            ITDSNT S PLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLT+TRPDIAYAVHIVSQ M
Sbjct: 936 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 995

Query: 121 AAP 124
           AAP
Sbjct: 996 AAP 998

[Close]

BLAST of Cmc02g0052101 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-20
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           +II  N+  A+ +L+  L   F+++DLG L YFLGLE++R + G  + Q KY  DLL  +
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            +     +S+P+DP+V  + + G    D   YR+L+G L+YL +TR DI++AV+ +SQ  
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 121 AAP 124
            AP
Sbjct: 407 EAP 409

[Close]

BLAST of Cmc02g0052101 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 1   MIIFGNDPQAIFDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYVSDLLVRS 60
           +++ G+    +  L   L   F MKDLG ++YFLG+++     G  LSQ KY   +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  RITDSNTTSMPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTMTRPDIAYAVHIVSQIM 120
            + D    S PL   ++ +        D S +R +VG+L YLT+TRPDI+YAV+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAP 124
             P
Sbjct: 130 HEP 131

The following BLAST results are available for this feature:

BLAST of Cmc02g0052101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058546.1	5.7e-56	92.68	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0054647.1	7.4e-56	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064060.1	2.2e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0052097.1	2.2e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060225.1	2.8e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0052101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.1e-20	43.09	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.1e-17	39.84	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	1.9e-14	37.40	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	5.4e-09	35.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	2.7e-08	29.60	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0052101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWJ4	2.8e-56	92.68	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UJ79	3.6e-56	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UCC7	1.0e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V9Z8	1.0e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V2X4	1.4e-55	91.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0052101 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-20	39.84	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-15	37.40	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 1.8E-12 score: 47.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..113
None	No IPR available	PANTHER	PTHR11439:SF344	SUBFAMILY NOT NAMED	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0052101.1	Cmc02g0052101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding