Cmc02g0052041 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0052041
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionAuxin-induced protein
LocationCMiso1.1chr02: 19132924 .. 19133319 (+)
RNA-Seq ExpressionCmc02g0052041
SyntenyCmc02g0052041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTTCTCTGGTTTGTTCTGAAGGTCCTCCCTCTGCAACTCCATCTCTCTTTCTCTTTTTACAATGCTTTCTGGAATGTCCTCTATTGACACATACCGCACGTCGGGGCATGCCACGACCTGCATTGCAAGGTCATCGACTAACTCTTTGAATCTTTCATTTCTCCCCACAAAGTCAGTTTCACAGTTCACTTCAATTAGAACGCCAATACGGGAGTCGTGAATGTAGGATCCGATTCTTCCTTCAGCAGCTAGACGGCTAGATTTCTTATCTGCACTTGAAAGCCCTTTCTTTCTTAGATACTCTTGTGCCTTCTCTAAATCCCCACCAGTTTCAGAGAGGGCTTTCTTACAGTCCATCATCCCTGCTCCTGTCTCTTCTCGGAGTTTTTTAAC

mRNA sequence

AATGTTCTCTGGTTTGTTCTGAAGGTCCTCCCTCTGCAACTCCATCTCTCTTTCTCTTTTTACAATGCTTTCTGGAATGTCCTCTATTGACACATACCGCACGTCGGGGCATGCCACGACCTGCATTGCAAGGTCATCGACTAACTCTTTGAATCTTTCATTTCTCCCCACAAAGTCAGTTTCACAGTTCACTTCAATTAGAACGCCAATACGGGAGTCGTGAATGTAGGATCCGATTCTTCCTTCAGCAGCTAGACGGCTAGATTTCTTATCTGCACTTGAAAGCCCTTTCTTTCTTAGATACTCTTGTGCCTTCTCTAAATCCCCACCAGTTTCAGAGAGGGCTTTCTTACAGTCCATCATCCCTGCTCCTGTCTCTTCTCGGAGTTTTTTAAC

Coding sequence (CDS)

ATGCTTTCTGGAATGTCCTCTATTGACACATACCGCACGTCGGGGCATGCCACGACCTGCATTGCAAGGTCATCGACTAACTCTTTGAATCTTTCATTTCTCCCCACAAAGTCAGTTTCACAGTTCACTTCAATTAGAACGCCAATACGGGAGTCGTGA

Protein sequence

MLSGMSSIDTYRTSGHATTCIARSSTNSLNLSFLPTKSVSQFTSIRTPIRES
Homology
[Close]
BLAST of Cmc02g0052041 vs. NCBI nr
Match: KAF1886241.1 (hypothetical protein Lal_00045471 [Lupinus albus])

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1   MLSGMSSIDTYRTSGHATTCIARSSTNSLNLSFLPTKSVSQFTSIRTPIRES 53
           M+SG+SS+DTY T GHATTCIARSSTNSLN S LPTKSVSQFTSIRTP+RES
Sbjct: 321 MVSGISSMDTYCTWGHATTCIARSSTNSLNFSLLPTKSVSQFTSIRTPMRES 372

[Close]
BLAST of Cmc02g0052041 vs. ExPASy TrEMBL
Match: A0A6A5NF16 (Auxin-induced protein OS=Lupinus albus OX=3870 GN=Lal_00045471 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1   MLSGMSSIDTYRTSGHATTCIARSSTNSLNLSFLPTKSVSQFTSIRTPIRES 53
           M+SG+SS+DTY T GHATTCIARSSTNSLN S LPTKSVSQFTSIRTP+RES
Sbjct: 321 MVSGISSMDTYCTWGHATTCIARSSTNSLNFSLLPTKSVSQFTSIRTPMRES 372

[Close]
BLAST of Cmc02g0052041 vs. ExPASy TrEMBL
Match: A0A0A9KS82 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1  MLSGMSSIDTYRTSGHATTCIARSSTNSLNLSFLPTKSVSQFTSIRTPIRES 53
          +LSGMSS +TY T G ATTCIARS T+SLN SF  TKSVS+ TSI  P+R S
Sbjct: 22 ILSGMSSTETYSTCGQATTCIARSFTSSLNFSFRATKSVSELTSIMHPMRLS 73

The following BLAST results are available for this feature:
BLAST of Cmc02g0052041 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1886241.12.5e-1384.62hypothetical protein Lal_00045471 [Lupinus albus][more]
BLAST of Cmc02g0052041 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc02g0052041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5NF161.2e-1384.62Auxin-induced protein OS=Lupinus albus OX=3870 GN=Lal_00045471 PE=3 SV=1[more]
A0A0A9KS823.8e-0767.31Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of Cmc02g0052041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0052041.1Cmc02g0052041.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus