Cmc02g0050731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Location	CMiso1.1chr02: 17013621 .. 17014490 (-)
RNA-Seq Expression	Cmc02g0050731
Synteny	Cmc02g0050731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACATTCATCACCTTGTGGGGAACGTTCTGCTATAAAGTAATGCGTTTTGGGTTAAAAAATGCAGGAGCAATTTATCAGAGAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGATTGCCAAGTCCAGACTCGAAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAACGTTTGCGAAAGTTCCAATTAAAGTTGAATCCAGCAAAATGCATATTTGGAGTTGCTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTTAGAAGTTTTTTAGGAAGGTTGAATTACATTGCAAGATTTATTTCATACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGAAAAAATGAGATTTGTCATTGGAATGAAGATTGCCAAAAAGCTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTATACTTGACAGTGAAGGAGGGGTCAATGGGATGTGTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAGAAGTTCACGAATTATGAATCAAAATACTCATTGTTGGAAAAAACATGTTGTGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTATACTATACTACATGGCTTATTTCAAAAATGGATCCTATAAAATACATTTTTTAA

mRNA sequence

ATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACATTCATCACCTTGTGGGGAACGTTCTGCTATAAAGTAATGCGTTTTGGGTTAAAAAATGCAGGAGCAATTTATCAGAGAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGATTGCCAAGTCCAGACTCGAAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAACGTTTGCGAAAGTTCCAATTAAAGTTGAATCCAGCAAAATGCATATTTGGAGTTGCTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTTAGAAGTTTTTTAGGAAGGTTGAATTACATTGCAAGATTTATTTCATACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGAAAAAATGAGATTTGTCATTGGAATGAAGATTGCCAAAAAGCTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTATACTTGACAGTGAAGGAGGGGTCAATGGGATGTGTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAGAAGTTCACGAATTATGAATCAAAATACTCATTGTTGGAAAAAACATGTTGTGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTATACTATACTACATGGCTTATTTCAAAAATGGATCCTATAAAATACATTTTTTAA

Coding sequence (CDS)

ATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACATTCATCACCTTGTGGGGAACGTTCTGCTATAAAGTAATGCGTTTTGGGTTAAAAAATGCAGGAGCAATTTATCAGAGAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGATTGCCAAGTCCAGACTCGAAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAACGTTTGCGAAAGTTCCAATTAAAGTTGAATCCAGCAAAATGCATATTTGGAGTTGCTTCTGGGAAGTTATTGGGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCAAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTTAGAAGTTTTTTAGGAAGGTTGAATTACATTGCAAGATTTATTTCATACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGAAAAAATGAGATTTGTCATTGGAATGAAGATTGCCAAAAAGCTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTATACTTGACAGTGAAGGAGGGGTCAATGGGATGTGTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAGAAGTTCACGAATTATGAATCAAAATACTCATTGTTGGAAAAAACATGTTGTGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTATACTATACTACATGGCTTATTTCAAAAATGGATCCTATAAAATACATTTTTTAA

Protein sequence

MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF

Homology

[Close]

BLAST of Cmc02g0050731 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 555.8 bits (1431), Expect = 2.1e-154
Identity = 271/283 (95.76%), Postives = 275/283 (97.17%), Query Frame = 0


Query: 7    YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVD 66
            YNQIKMAPEDQEKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVD
Sbjct: 1297 YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVD 1356

Query: 67   DMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGIKVDPDK 126
            DM+AKSRLEEKHVVTLRKLFE LRKFQLKLNPAKC FGV+S KLLGFIVSREGIKVDPDK
Sbjct: 1357 DMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVSSRKLLGFIVSREGIKVDPDK 1416

Query: 127  IKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAF 186
            I+AIVDLRPPKTQKEVRSFLGRLNY ARFIS+LTQTCEPILKLLRKNEICHWNEDCQKAF
Sbjct: 1417 IQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAF 1476

Query: 187  DKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY 246
            DKIKDYLQSPPILVPPTPGRPLI  LTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY
Sbjct: 1477 DKIKDYLQSPPILVPPTPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY 1536

Query: 247  ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1537 ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 1579

[Close]

BLAST of Cmc02g0050731 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 495.0 bits (1273), Expect = 4.5e-136
Identity = 238/289 (82.35%), Postives = 256/289 (88.58%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYN+IKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKE
Sbjct: 1004 MDGFSGYNRIKMAPEDREKTTFITLWGTFCYKVMSFGLKNAGATYQRAMVTLFHDLMHKE 1063

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKSR  E+H + LRKLFERLRKFQLKLNP KC FGV SGKLLGF+V +EGI
Sbjct: 1064 IEVYVDDMIAKSRQGEEHTLVLRKLFERLRKFQLKLNPNKCTFGVTSGKLLGFVVGQEGI 1123

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+++ PPKT KEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W E
Sbjct: 1124 KVDPDKVKAILEMSPPKTXKEVRGFLGRLNYIARFISHLTATCEPIFKLLRKNNDGIWGE 1183

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DCQ AFDKIK Y QSPPILVPPT GRPLILYLT+ E SMGCVLGQHD +G+KEQA+YYLS
Sbjct: 1184 DCQVAFDKIKQYXQSPPILVPPTSGRPLILYLTMTENSMGCVLGQHDDSGRKEQAIYYLS 1243

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+ E+ YS +EKTCCALAW   RLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1244 KKFTDCETXYSPVEKTCCALAWAAHRLRQYMLYYTTWLISKMDPIKYIF 1292

[Close]

BLAST of Cmc02g0050731 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 2.2e-135
Identity = 233/289 (80.62%), Postives = 259/289 (89.62%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKE
Sbjct: 1704 MDGFSGYNQIKMAEEDREKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDMMHKE 1763

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+KC FG  SGKLLGFIVS EGI
Sbjct: 1764 IEVYVDDMIAKSKANEDHTTILQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI 1823

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNE
Sbjct: 1824 KVDPDKVKAIMDMPSPETEKEVRAFLGRLNYISRFISHLTPTCEPIFKLLRKNNPGKWNE 1883

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DC++AF+KIK YLQSPP+L+PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLS
Sbjct: 1884 DCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLEGSMGGVLGQHDLSGKKEHAIYYLS 1943

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Sbjct: 1944 KKFTDYESKYSMLERTCCALVWTAHRLRQYMLYHTTWLISKMDPIKYIF 1992

[Close]

BLAST of Cmc02g0050731 vs. NCBI nr
Match: XP_031741698.1 (uncharacterized protein LOC116403895 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 2.2e-135
Identity = 233/289 (80.62%), Postives = 259/289 (89.62%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKE
Sbjct: 1371 MDGFSGYNQIKMAEEDREKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDMMHKE 1430

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+KC FG  SGKLLGFIVS EGI
Sbjct: 1431 IEVYVDDMIAKSKANEDHTTILQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI 1490

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNE
Sbjct: 1491 KVDPDKVKAIMDMPSPETEKEVRAFLGRLNYISRFISHLTPTCEPIFKLLRKNNPGKWNE 1550

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DC++AF+KIK YLQSPP+L+PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLS
Sbjct: 1551 DCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLEGSMGGVLGQHDLSGKKEHAIYYLS 1610

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Sbjct: 1611 KKFTDYESKYSMLERTCCALVWTAHRLRQYMLYHTTWLISKMDPIKYIF 1659

[Close]

BLAST of Cmc02g0050731 vs. NCBI nr
Match: XP_031737561.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 2.2e-135
Identity = 233/289 (80.62%), Postives = 259/289 (89.62%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYNQIKMA ED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHD+MHKE
Sbjct: 1360 MDGFSGYNQIKMAEEDREKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDMMHKE 1419

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E H   L+KLF+RLRK+QLKLNP+KC FG  SGKLLGFIVS EGI
Sbjct: 1420 IEVYVDDMIAKSKANEDHTTILQKLFDRLRKYQLKLNPSKCTFGATSGKLLGFIVSEEGI 1479

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+D+  P+T+KEVR+FLGRLNYI+RFIS+LT TCEPI KLLRKN    WNE
Sbjct: 1480 KVDPDKVKAIMDMPSPETEKEVRAFLGRLNYISRFISHLTPTCEPIFKLLRKNNPGKWNE 1539

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DC++AF+KIK YLQSPP+L+PP PGRPLILYLTV EGSMG VLGQHD +GKKE A+YYLS
Sbjct: 1540 DCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLEGSMGGVLGQHDLSGKKEHAIYYLS 1599

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIF
Sbjct: 1600 KKFTDYESKYSMLERTCCALVWTAHRLRQYMLYHTTWLISKMDPIKYIF 1648

[Close]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-38
Identity = 98/290 (33.79%), Postives = 150/290 (51.72%), Query Frame = 0


Query: 1   MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
           +D   G++QI+M PE   KT F T  G + Y  M FGLKNA A +QR M  +   L++K 
Sbjct: 301 IDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKH 360

Query: 61  IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
             VY+DD+I  S   ++H+ +L  +FE+L K  LKL   KC F       LG +++ +GI
Sbjct: 361 CLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGI 420

Query: 121 KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKN-EICHWN 180
           K +P+KI+AI     P   KE+++FLG   Y  +FI       +P+ K L+KN +I   N
Sbjct: 421 KPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTN 480

Query: 181 EDCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYL 240
            +   AF K+K  +   PIL  P   +   L     + ++G VL Q          + Y+
Sbjct: 481 PEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG------HPLSYI 540

Query: 241 SKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
           S+    +E  YS +EK   A+ W T+  R Y+L     + S   P+ +++
Sbjct: 541 SRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLY 584

[Close]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.9e-35
Identity = 93/289 (32.18%), Postives = 148/289 (51.21%), Query Frame = 0


Query: 1   MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
           +D   G++QI+M  E   KT F T  G + Y  M FGL+NA A +QR M  +   L++K 
Sbjct: 300 IDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKH 359

Query: 61  IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
             VY+DD+I  S    +H+ +++ +F +L    LKL   KC F       LG IV+ +GI
Sbjct: 360 CLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGI 419

Query: 121 KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRK-NEICHWN 180
           K +P K+KAIV    P   KE+R+FLG   Y  +FI       +P+   L+K  +I    
Sbjct: 420 KPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQK 479

Query: 181 EDCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYL 240
            +  +AF+K+K  +   PIL  P   +  +L       ++G VL Q+         + ++
Sbjct: 480 LEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG------HPISFI 539

Query: 241 SKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYI 289
           S+   ++E  YS +EK   A+ W T+  R Y+L     + S   P++++
Sbjct: 540 SRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWL 582

[Close]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-33
Identity = 90/282 (31.91%), Postives = 142/282 (50.35%), Query Frame = 0


Query: 1   MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
           +D  SG++QI M   D  KT F TL G + +  + FGLKNA AI+QR +  +  + + K 
Sbjct: 217 LDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKV 276

Query: 61  IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
             VY+DD+I  S   + H   LR +   L K  L++N  K  F     + LG+IV+ +GI
Sbjct: 277 CYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGI 336

Query: 121 KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLR--------- 180
           K DP K++AI ++ PP + KE++ FLG  +Y  +FI    +  +P+  L R         
Sbjct: 337 KADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSS 396

Query: 181 --KNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDST 240
                    +E   ++F+ +K  L S  IL  P   +P  L       ++G VL Q D  
Sbjct: 397 QSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQ- 456

Query: 241 GKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYM 272
             +++ + Y+S+     E  Y+ +EK   A+ W+   LR Y+
Sbjct: 457 -GRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYL 496

[Close]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-31
Identity = 94/274 (34.31%), Postives = 135/274 (49.27%), Query Frame = 0


Query: 1   MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
           +D  SGY+QI M P+D+ KT F+T  G + Y VM FGL NA + + R M   F DL  + 
Sbjct: 685 LDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RF 744

Query: 61  IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
           + VY+DD++  S   E+H   L  + ERL+   L +   KC F     + LG+ +  + I
Sbjct: 745 VNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKI 804

Query: 121 KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPI-LKLLRKNEICHWN 180
                K  AI D   PKT K+ + FLG +NY  RFI   ++  +PI L +  K++   W 
Sbjct: 805 APLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQ---WT 864

Query: 181 EDCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYL 240
           E   KA DK+KD L + P+LVP        L     +  +G VL + D+  K    V Y 
Sbjct: 865 EKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYF 924

Query: 241 SKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLY 274
           SK   + +  Y   E     +       R YML+
Sbjct: 925 SKSLESAQKNYPAGELELLGIIKALHHFR-YMLH 952

[Close]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-30
Identity = 80/272 (29.41%), Postives = 139/272 (51.10%), Query Frame = 0


Query: 1   MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
           +D  S Y+ I++   D+ K  F    G F Y VM +G+  A A +Q  + T+  +     
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESH 560

Query: 61  IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
           +  Y+DD++  S+ E +HV  ++ + ++L+   L +N AKC F  +  K +G+ +S +G 
Sbjct: 561 VVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGF 620

Query: 121 KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
               + I  ++  + PK +KE+R FLG +NY+ +FI   +Q   P+  LL+K+    W  
Sbjct: 621 TPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

Query: 181 DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQ-HDSTGKKEQAVYYL 240
              +A + IK  L SPP+L      + ++L     + ++G VL Q HD    K   V Y 
Sbjct: 681 TQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDD--DKYYPVGYY 740

Query: 241 SKKFTNYESKYSLLEKTCCALAWTTQRLRQYM 272
           S K +  +  YS+ +K   A+  + +  R Y+
Sbjct: 741 SAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYL 770

[Close]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.0e-154
Identity = 271/283 (95.76%), Postives = 275/283 (97.17%), Query Frame = 0


Query: 7    YNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKEIEVYVD 66
            YNQIKMAPEDQEKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKEIEVYVD
Sbjct: 1297 YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVD 1356

Query: 67   DMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGIKVDPDK 126
            DM+AKSRLEEKHVVTLRKLFE LRKFQLKLNPAKC FGV+S KLLGFIVSREGIKVDPDK
Sbjct: 1357 DMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVSSRKLLGFIVSREGIKVDPDK 1416

Query: 127  IKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAF 186
            I+AIVDLRPPKTQKEVRSFLGRLNY ARFIS+LTQTCEPILKLLRKNEICHWNEDCQKAF
Sbjct: 1417 IQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAF 1476

Query: 187  DKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY 246
            DKIKDYLQSPPILVPPTPGRPLI  LTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY
Sbjct: 1477 DKIKDYLQSPPILVPPTPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNY 1536

Query: 247  ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1537 ESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 1579

[Close]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 238/289 (82.35%), Postives = 256/289 (88.58%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYN+IKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKE
Sbjct: 1004 MDGFSGYNRIKMAPEDREKTTFITLWGTFCYKVMSFGLKNAGATYQRAMVTLFHDLMHKE 1063

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKSR  E+H + LRKLFERLRKFQLKLNP KC FGV SGKLLGF+V +EGI
Sbjct: 1064 IEVYVDDMIAKSRQGEEHTLVLRKLFERLRKFQLKLNPNKCTFGVTSGKLLGFVVGQEGI 1123

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+++ PPKT KEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W E
Sbjct: 1124 KVDPDKVKAILEMSPPKTXKEVRGFLGRLNYIARFISHLTATCEPIFKLLRKNNDGIWGE 1183

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DCQ AFDKIK Y QSPPILVPPT GRPLILYLT+ E SMGCVLGQHD +G+KEQA+YYLS
Sbjct: 1184 DCQVAFDKIKQYXQSPPILVPPTSGRPLILYLTMTENSMGCVLGQHDDSGRKEQAIYYLS 1243

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+ E+ YS +EKTCCALAW   RLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1244 KKFTDCETXYSPVEKTCCALAWAAHRLRQYMLYYTTWLISKMDPIKYIF 1292

[Close]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 4.1e-135
Identity = 235/289 (81.31%), Postives = 258/289 (89.27%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYNQIKMAPED+EKTT ITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKE
Sbjct: 938  MDGFSGYNQIKMAPEDREKTTLITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKE 997

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLNP KCIFG  +GKLLGF+VS+E I
Sbjct: 998  IEVYVDDMIAKSKQGEEHTTILRKLFDRLRKFKLKLNPNKCIFGATTGKLLGFVVSQEDI 1057

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVD DK+KAI+++ PP+TQKEVR FLGRLNYIAR IS+LT TCEPI KLLRKN    W+E
Sbjct: 1058 KVDLDKVKAILEMPPPQTQKEVREFLGRLNYIARLISHLTATCEPIFKLLRKNNDGVWSE 1117

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DCQ AFDKIK YLQ PPILVPPTPGRPLILYLTV E SMGCVLGQHD +G+KEQA+YYLS
Sbjct: 1118 DCQAAFDKIKQYLQDPPILVPPTPGRPLILYLTVTENSMGCVLGQHDDSGRKEQAIYYLS 1177

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+ E++YS +EKTCCALAW T+RLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1178 KKFTDCETRYSQVEKTCCALAWATRRLRQYMLYYTTWLISKMDPIKYIF 1226

[Close]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.0e-134
Identity = 233/289 (80.62%), Postives = 257/289 (88.93%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            M GFSG N IKMAPED+EKTTFITLWGTFCYKVM FGLKN GA YQRAMVTLFHDLMHKE
Sbjct: 767  MGGFSGXNXIKMAPEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDLMHKE 826

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLNP KCIFG  +GKLLGF+VS+EGI
Sbjct: 827  IEVYVDDMIAKSKQGEEHTTILRKLFDRLRKFKLKLNPNKCIFGATTGKLLGFVVSQEGI 886

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+++ PP+TQKEVR FLGRLNYIARFIS+LT TCEPI KLLRKN    W+E
Sbjct: 887  KVDPDKVKAILEMPPPQTQKEVRGFLGRLNYIARFISHLTATCEPIFKLLRKNNDGVWSE 946

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DCQ AF+KIK YLQ PPILVPPTPGRPLILYLTV E SMGCVLGQHD +G+KEQA+YYLS
Sbjct: 947  DCQAAFNKIKQYLQDPPILVPPTPGRPLILYLTVTENSMGCVLGQHDDSGRKEQAIYYLS 1006

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+ E++YS +EKTCCALAW  +RLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1007 KKFTDCETRYSQVEKTCCALAWVARRLRQYMLYYTTWLISKMDPIKYIF 1055

[Close]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 2.7e-134
Identity = 233/289 (80.62%), Postives = 258/289 (89.27%), Query Frame = 0


Query: 1    MDGFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMRFGLKNAGAIYQRAMVTLFHDLMHKE 60
            MDGFSGYNQIKMAPED+EKTTFITLWGTFCYKVM FGLKNAGA YQRAMVTLFHDLMHKE
Sbjct: 1329 MDGFSGYNQIKMAPEDREKTTFITLWGTFCYKVMSFGLKNAGATYQRAMVTLFHDLMHKE 1388

Query: 61   IEVYVDDMIAKSRLEEKHVVTLRKLFERLRKFQLKLNPAKCIFGVASGKLLGFIVSREGI 120
            IEVYVDDMIAKS+  E+H   LRKLF+RLRKF+LKLN  KCIFG  +GKLLGF+VS+EGI
Sbjct: 1389 IEVYVDDMIAKSKQGEEHTTILRKLFDRLRKFKLKLNSNKCIFGATTGKLLGFVVSQEGI 1448

Query: 121  KVDPDKIKAIVDLRPPKTQKEVRSFLGRLNYIARFISYLTQTCEPILKLLRKNEICHWNE 180
            KVDPDK+KAI+++ PP+TQKEVR FLGRLNYIARFIS+LT TCEPI KLLRKN     +E
Sbjct: 1449 KVDPDKVKAILEMPPPQTQKEVRGFLGRLNYIARFISHLTATCEPIFKLLRKNNDGVXSE 1508

Query: 181  DCQKAFDKIKDYLQSPPILVPPTPGRPLILYLTVKEGSMGCVLGQHDSTGKKEQAVYYLS 240
            DCQ AFDK+K YLQ PP+LVPPTPGR LILYLTV E SMGCVLGQHD +G+KEQA+YYLS
Sbjct: 1509 DCQAAFDKVKQYLQDPPVLVPPTPGRLLILYLTVTENSMGCVLGQHDDSGRKEQAIYYLS 1568

Query: 241  KKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIF 290
            KKFT+ E++YS +EKTCCALAW  +RLRQYMLYYTTWLISKMDPIKYIF
Sbjct: 1569 KKFTDCETRYSQVEKTCCALAWAARRLRQYMLYYTTWLISKMDPIKYIF 1617

[Close]

BLAST of Cmc02g0050731 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-12
Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 93  QLKLNPAKCIFGVASGKLLG--FIVSREGIKVDPDKIKAIVDLRPPKTQKEVRSFLGRLN 152
           Q   N  KC FG      LG   I+S EG+  DP K++A+V    PK   E+R FLG   
Sbjct: 15  QFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTG 74

Query: 153 YIARFISYLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGRPLI 210
           Y  RF+    +   P+ +LL+KN +  W E    AF  +K  + + P+L  P    P +
Sbjct: 75  YYRRFVKNYGKIVRPLTELLKKNSL-KWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc02g0050731 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065293.1	2.1e-154	95.76	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
XP_022155098.1	4.5e-136	82.35	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_031738551.1	2.2e-135	80.62	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
XP_031741698.1	2.2e-135	80.62	uncharacterized protein LOC116403895 [Cucumis sativus]	[more]
XP_031737561.1	2.2e-135	80.62	LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]	[more]

BLAST of Cmc02g0050731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.6e-38	33.79	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	7.9e-35	32.18	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.0e-33	31.91	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	1.4e-31	34.31	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	1.2e-30	29.41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc02g0050731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAU5	1.0e-154	95.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1DM29	2.2e-136	82.35	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1E2J7	4.1e-135	81.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1DZ90	2.0e-134	80.62	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]
A0A6J1D099	2.7e-134	80.62	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]

BLAST of Cmc02g0050731 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.5e-12	34.45	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 205..278 e-value: 3.1E-7 score: 32.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 8..40 e-value: 7.8E-33 score: 115.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..194
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 2..194
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..115 e-value: 6.71417E-52 score: 166.232
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..115 e-value: 7.8E-33 score: 115.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 125..204 e-value: 5.9E-24 score: 85.9
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 178..272 e-value: 7.5E-23 score: 80.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..114 e-value: 1.9E-15 score: 57.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050731.1	Cmc02g0050731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity