Cmc02g0050641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0050641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 16908819 .. 16909127 (-)
RNA-Seq Expression	Cmc02g0050641
Synteny	Cmc02g0050641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTATTCCTTATGCATCTATTGTTGGAAGCTTATTGTATGCACAAACTTACACTAGACCAGACATCAGTTTTGCTGTGGGTATGCTAGGCAGGTATCAAAGTAATCCAGGAATGAATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATATGATCATCTTGAGGTAATTGGATATTCAGATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTGTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGA

mRNA sequence

ATGGAAACTATTCCTTATGCATCTATTGTTGGAAGCTTATTGTATGCACAAACTTACACTAGACCAGACATCAGTTTTGCTGTGGGTATGCTAGGCAGGTATCAAAGTAATCCAGGAATGAATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATATGATCATCTTGAGGTAATTGGATATTCAGATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTGTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGA

Coding sequence (CDS)

ATGGAAACTATTCCTTATGCATCTATTGTTGGAAGCTTATTGTATGCACAAACTTACACTAGACCAGACATCAGTTTTGCTGTGGGTATGCTAGGCAGGTATCAAAGTAATCCAGGAATGAATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAAGATTATATGCTTACTTACAAGAGATATGATCATCTTGAGGTAATTGGATATTCAGATTCAGATTTTGCCGGATGTGTGGATACAAGAAAATCCACTGTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGA

Protein sequence

METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS

Homology

[Close]

BLAST of Cmc02g0050641 vs. NCBI nr
Match: KAA0035636.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK30906.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSNPGM+HWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. NCBI nr
Match: KAA0046843.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04491.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSNPGM+HWKAAKKVLRYLQGTKDYM
Sbjct: 524 METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 583

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDF GCVDTRKST GYLFLLAEGAIS
Sbjct: 584 LTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAIS 625

[Close]

BLAST of Cmc02g0050641 vs. NCBI nr
Match: TYK00088.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTYTRPDISFAVGML RYQSNPGMNHWKAA KVLRYLQGTKDYM
Sbjct: 269 METIPYASIVGSLLYAQTYTRPDISFAVGMLDRYQSNPGMNHWKAAMKVLRYLQGTKDYM 328

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHL+VIGYSDSDF GCVDTRKSTVGYLFLLA+GAIS
Sbjct: 329 LTYKRSDHLKVIGYSDSDFTGCVDTRKSTVGYLFLLAKGAIS 370

[Close]

BLAST of Cmc02g0050641 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISF VGMLGRYQSNPGM+HWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSN GM+HWKAAKKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-23
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           M+ +PY S VG+++Y    TRPD++ AVG+L ++ S+P   HW+A K+VLRYLQ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           L + R    +++GYSD+D+AG V++R+ST GYLF L  G +S
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVS 102

[Close]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1    METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
            M  +PY+S VGSL+YA   TRPDI+ AVG++ R+  NPG  HW+A K +LRYL+GT    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
            L +   D + + GY+D+D AG +D RKS+ GYLF  + GAIS
Sbjct: 1166 LCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

[Close]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-16
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 6    YASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y   +TRPD+S+AV  L +Y   P  +HW A K+VLRYL GT D+ +  K+
Sbjct: 1228 YRGIVGSLQYL-AFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   YDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
             + L +  YSD+D+AG  D   ST GY+  L    IS
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323

[Close]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 5    PYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYK 64
            P  S++G L+Y    TRPD++ AV +L RY S      W+  K+VLRYL+GT D  L +K
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 65   RYDHLE--VIGYSDSDFAGCVDTRKSTVGYLF 95
            +    E  +IGY DSD+AG    RKST GYLF
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

[Close]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-13
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 6    YASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKR 65
            Y  IVGSL Y   +TRPDIS+AV  L ++   P   H +A K++LRYL GT ++ +  K+
Sbjct: 1245 YRGIVGSLQYL-AFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   YDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
             + L +  YSD+D+AG  D   ST GY+  L    IS
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPIS 1340

[Close]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL
Match: A0A5A7T0B6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001150 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSNPGM+HWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL
Match: A0A5A7TTF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001050 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.7e-48
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSNPGM+HWKAAKKVLRYLQGTKDYM
Sbjct: 524 METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYM 583

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDF GCVDTRKST GYLFLLAEGAIS
Sbjct: 584 LTYKRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAIS 625

[Close]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL
Match: A0A5D3BLU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00400 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQTYTRPDISFAVGML RYQSNPGMNHWKAA KVLRYLQGTKDYM
Sbjct: 269 METIPYASIVGSLLYAQTYTRPDISFAVGMLDRYQSNPGMNHWKAAMKVLRYLQGTKDYM 328

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHL+VIGYSDSDF GCVDTRKSTVGYLFLLA+GAIS
Sbjct: 329 LTYKRSDHLKVIGYSDSDFTGCVDTRKSTVGYLFLLAKGAIS 370

[Close]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISF VGMLGRYQSNPGM+HWK AKKVLRYLQGTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.4e-47
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   METIPYASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYM 60
           METIPYASIVGSLLYAQT TRPDISFAVGMLGRYQSN GM+HWKAAKKVLRYL+GTKDYM
Sbjct: 1   METIPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYM 60

Query: 61  LTYKRYDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
           LTYKR DHLEVIGYSDSDFAGCVDTRKST GYLFLLAEGAIS
Sbjct: 61  LTYKRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAIS 102

[Close]

BLAST of Cmc02g0050641 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 6   YASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKR 65
           Y  ++G L+Y Q  TR DISFAV  L ++   P + H +A  K+L Y++GT    L Y  
Sbjct: 378 YRRLIGRLMYLQ-ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  YDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
              +++  +SD+ F  C DTR+ST GY   L    IS
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLIS 473

[Close]

BLAST of Cmc02g0050641 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-13
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 6   YASIVGSLLYAQTYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKR 65
           + SIVG+L Y  T TRPDIS+AV ++ +    P +  +   K+VLRY++GT  + L   +
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  YDHLEVIGYSDSDFAGCVDTRKSTVGYLFLLAEGAIS 103
              L V  + DSD+AGC  TR+ST G+   L    IS
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

[Close]

BLAST of Cmc02g0050641 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 18 TYTRPDISFAVGMLGRYQSNPGMNHWKAAKKVLRYLQGTKDYMLTYKRYDHLEVIGYSDS 77
          T TRPD++FAV  L ++ S       +A  KVL Y++GT    L Y     L++  ++DS
Sbjct: 4  TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADS 63

Query: 78 DFAGCVDTRKSTVGYLFLL 97
          D+A C DTR+S  G+  L+
Sbjct: 64 DWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc02g0050641 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035636.1	1.4e-47	95.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0046843.1	1.4e-47	95.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00088.1	2.3e-47	94.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	4.0e-47	94.12	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]
KAA0051161.1	1.5e-46	94.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0050641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	3.2e-23	48.04	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	9.3e-23	50.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	6.5e-16	46.39	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.1e-15	47.83	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.3e-13	43.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc02g0050641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0B6	6.7e-48	95.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TTF5	6.7e-48	95.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BLU0	1.1e-47	94.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	1.9e-47	94.12	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7UCB2	7.4e-47	94.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0050641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-13	39.18	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.3e-13	41.24	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.4e-10	39.24	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..95
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 10..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0050641.1	Cmc02g0050641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding