Cmc02g0050531 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0050531
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRNA polymerase II transcriptional coactivator KELP
LocationCMiso1.1chr02: 16800549 .. 16800784 (-)
RNA-Seq ExpressionCmc02g0050531
SyntenyCmc02g0050531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAGGGTACGACGACGATGGCGATCTCATTGTTTGCTGGGTTTGTGTGTTTTTTCCTGCCTCTTCTCGTTTCCAGTAGCTTGTGATTGTATTTTCTTTTTGCTATTATGTTTTTTATGAAATTTGAAAATTTGGTGTTATTTGGCTCAGTTATCAAGCAAGAGGAAGGTGACGATTCAGAATTTTAAGGGGAAGACTCTGGTTTCGATTATGGAGTTTTATAGAAATTAG

mRNA sequence

ATGAAGAAAGGGTACGACGACGATGGCGATCTCATTGTTTGCTGGTTATCAAGCAAGAGGAAGGTGACGATTCAGAATTTTAAGGGGAAGACTCTGGTTTCGATTATGGAGTTTTATAGAAATTAG

Coding sequence (CDS)

ATGAAGAAAGGGTACGACGACGATGGCGATCTCATTGTTTGCTGGTTATCAAGCAAGAGGAAGGTGACGATTCAGAATTTTAAGGGGAAGACTCTGGTTTCGATTATGGAGTTTTATAGAAATTAG

Protein sequence

MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYRN
Homology
[Close]
BLAST of Cmc02g0050531 vs. NCBI nr
Match: KAA0046625.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIME 38
          MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLV + E
Sbjct: 1  MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVKVGE 37

[Close]
BLAST of Cmc02g0050531 vs. NCBI nr
Match: XP_008451928.1 (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KAA0044928.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa] >TYK16542.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. NCBI nr
Match: XP_022931551.1 (RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP_023551821.1 RNA polymerase II transcriptional coactivator KELP-like [Cucurbita pepo subsp. pepo] >KAG6577134.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015130.1 RNA polymerase II transcriptional coactivator KELP [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. NCBI nr
Match: XP_022985429.1 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. NCBI nr
Match: XP_038878439.1 (RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-09
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 3   KGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           K +DDDGDLI+C LS KR+VTIQ FKGK+LVSI E+Y+
Sbjct: 88  KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYK 125

[Close]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match: A0A5A7TZ23 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001770 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.8e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIME 38
          MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLV + E
Sbjct: 1  MKKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVKVGE 37

[Close]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match: A0A6J1J851 (RNA polymerase II transcriptional coactivator KELP-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483435 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 103 EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 141

[Close]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match: A0A5A7TPV6 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003580 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match: A0A6J1JD91 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483435 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 79  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 117

[Close]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match: A0A6J1JDK7 (RNA polymerase II transcriptional coactivator KELP-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483435 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 2   KKGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           +K YDDDGDLIVCWLSSKRKVTIQ+F+GKTLVSI EFYR
Sbjct: 91  EKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYR 129

[Close]
BLAST of Cmc02g0050531 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-10
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 3   KGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           K +DDDGDLI+C LS KR+VTIQ FKGK+LVSI E+Y+
Sbjct: 88  KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYK 125

[Close]
BLAST of Cmc02g0050531 vs. TAIR 10
Match: AT4G10920.2 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-10
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 3   KGYDDDGDLIVCWLSSKRKVTIQNFKGKTLVSIMEFYR 41
           K +DDDGDLI+C LS KR+VTIQ FKGK+LVSI E+Y+
Sbjct: 88  KEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYK 125

The following BLAST results are available for this feature:
BLAST of Cmc02g0050531 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046625.11.2e-1091.89RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa][more]
XP_008451928.11.6e-1087.18PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KA... [more]
XP_022931551.11.6e-1087.18RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP... [more]
XP_022985429.11.6e-1087.18RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita ma... [more]
XP_038878439.11.6e-1087.18RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida][more]
BLAST of Cmc02g0050531 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O651552.4e-0971.05RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37... [more]
BLAST of Cmc02g0050531 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZ235.8e-1191.89RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O... [more]
A0A6J1J8517.6e-1187.18RNA polymerase II transcriptional coactivator KELP-like isoform X1 OS=Cucurbita ... [more]
A0A5A7TPV67.6e-1187.18RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O... [more]
A0A6J1JD917.6e-1187.18RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita ... [more]
A0A6J1JDK77.6e-1187.18RNA polymerase II transcriptional coactivator KELP-like isoform X2 OS=Cucurbita ... [more]
BLAST of Cmc02g0050531 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10920.11.7e-1071.05transcriptional coactivator p15 (PC4) family protein (KELP) [more]
AT4G10920.21.7e-1071.05transcriptional coactivator p15 (PC4) family protein (KELP) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 3..41
e-value: 2.2E-8
score: 35.6
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 13..39
IPR003173Transcriptional coactivator p15 (PC4), C-terminalPFAMPF02229PC4coord: 16..40
e-value: 1.3E-7
score: 31.1
IPR045125RNA polymerase II transcriptional coactivator Sub1/Tcp4-likePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 2..40
NoneNo IPR availablePANTHERPTHR13215:SF6RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELPcoord: 2..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0050531.1Cmc02g0050531.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription regulator complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity