Cmc02g0048581 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0048581
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTransport membrane protein
LocationCMiso1.1chr02: 14102016 .. 14102246 (-)
RNA-Seq ExpressionCmc02g0048581
SyntenyCmc02g0048581
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTTCGCTTTTCACAACAGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATTGTCGCCTATTTTCTTATTTCTTTCATTATAGAGTTGGCTATCTTTGTGGCATCATTTGTACAAGTTCGTTCAGAGGGCTGGATGAGTGGAATGAAGCTCTGTAAGGAGTTGACAGCTCAATCGAGAAAAAATAAGAGGGGAACCCCTAGAACCTGGCAAAGTCACTATTAA

mRNA sequence

ATGGTTTTTTCGCTTTTCACAACAGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATTGTCGCCTATTTTCTTATTTCTTTCATTATAGAGTTGGCTATCTTTGTGGCATCATTTGTACAAGTTCGTTCAGAGGGCTGGATGAGTGGAATGAAGCTCTGTAAGGAGTTGACAGCTCAATCGAGAAAAAATAAGAGGGGAACCCCTAGAACCTGGCAAAGTCACTATTAA

Coding sequence (CDS)

ATGGTTTTTTCGCTTTTCACAACAGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATTGTCGCCTATTTTCTTATTTCTTTCATTATAGAGTTGGCTATCTTTGTGGCATCATTTGTACAAGTTCGTTCAGAGGGCTGGATGAGTGGAATGAAGCTCTGTAAGGAGTTGACAGCTCAATCGAGAAAAAATAAGAGGGGAACCCCTAGAACCTGGCAAAGTCACTATTAA

Protein sequence

MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQSRKNKRGTPRTWQSHY
Homology
[Close]
BLAST of Cmc02g0048581 vs. NCBI nr
Match: KAA0059749.1 (transport membrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS I+ELAIFVAS VQVRSEGW SGM+L KELTA+
Sbjct: 337 MVFPLFTAALSTPPDIWCQIVAPFLISLILELAIFVASIVQVRSEGWTSGMRLRKELTAR 396

Query: 61  SRKNKRGTPRTWQSHY 77
           SRK KRGTPRTWQSHY
Sbjct: 397 SRKKKRGTPRTWQSHY 412

[Close]
BLAST of Cmc02g0048581 vs. NCBI nr
Match: AEN56110.1 (transport membrane protein [Cucumis melo subsp. melo] >AZP40289.1 transport membrane protein [Cucumis melo var. momordica])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS I+ELAIFVAS VQVRSEGW SGM+L KELTA+
Sbjct: 228 MVFPLFTAALSTPPDIWCQIVAPFLISLILELAIFVASIVQVRSEGWTSGMRLRKELTAR 287

Query: 61  SRKNKRGTPRTWQSHY 77
           SRK KRGTPRTWQSHY
Sbjct: 288 SRKKKRGTPRTWQSHY 303

[Close]
BLAST of Cmc02g0048581 vs. NCBI nr
Match: XP_030925259.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC115952294 [Quercus lobata])

HSP 1 Score: 100.5 bits (249), Expect = 6.5e-18
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS IIELAIFVAS VQVR EGW SGM   +E  + 
Sbjct: 341 MVFPLFTAALSTPPDIWCQIVACFLISSIIELAIFVASIVQVREEGWTSGM---RESGSI 400

Query: 61  SRKNKRGTPRTWQSHY 77
           ++K     PRTWQSHY
Sbjct: 401 NKKEDXSPPRTWQSHY 413

[Close]
BLAST of Cmc02g0048581 vs. NCBI nr
Match: YP_009466036.1 (transport membrane protein, partial [Arabis alpina] >AVC55464.1 transport membrane protein, partial [Arabis alpina])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF L T ALSTPPDIWCQIVA FLIS IIELAIFVA  VQVR EGW SGM   +E  + 
Sbjct: 212 MVFPLLTAALSTPPDIWCQIVARFLISLIIELAIFVAFIVQVREEGWTSGM---RESGSI 271

Query: 61  SRKNKRGTPRTWQSHY 77
            +K K   PRTWQS+Y
Sbjct: 272 EKKKKSSPPRTWQSNY 284

[Close]
BLAST of Cmc02g0048581 vs. NCBI nr
Match: BBB05373.1 (twin-arginine translocation protein [Turritis glabra])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF L T ALSTPPDIWCQIVA FLIS IIELAIFVA  VQVR EGW SGM   +E  + 
Sbjct: 54  MVFPLLTAALSTPPDIWCQIVARFLISLIIELAIFVALIVQVREEGWTSGM---RESGSI 113

Query: 61  SRKNKRGTPRTWQSHY 77
            +K K   PRTWQS+Y
Sbjct: 114 EKKKKSSPPRTWQSNY 126

[Close]
BLAST of Cmc02g0048581 vs. ExPASy Swiss-Prot
Match: P93312 (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVFSL T AL TPPDIWCQIVA FLIS IIELAIFVA  VQVR EGW SGM   +E  + 
Sbjct: 206 MVFSLLTAALFTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGM---RESGSI 265

Query: 61  SRKNKRG-TPRTWQSHY 77
            +KNK    PRTWQS+Y
Sbjct: 266 EKKNKSSPPPRTWQSNY 279

[Close]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match: A0A5A7V1T2 (Transport membrane protein (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45385G00120 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS I+ELAIFVAS VQVRSEGW SGM+L KELTA+
Sbjct: 337 MVFPLFTAALSTPPDIWCQIVAPFLISLILELAIFVASIVQVRSEGWTSGMRLRKELTAR 396

Query: 61  SRKNKRGTPRTWQSHY 77
           SRK KRGTPRTWQSHY
Sbjct: 397 SRKKKRGTPRTWQSHY 412

[Close]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match: G3EU26 (Transport membrane protein OS=Cucumis melo subsp. melo OX=412675 GN=mttB PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS I+ELAIFVAS VQVRSEGW SGM+L KELTA+
Sbjct: 228 MVFPLFTAALSTPPDIWCQIVAPFLISLILELAIFVASIVQVRSEGWTSGMRLRKELTAR 287

Query: 61  SRKNKRGTPRTWQSHY 77
           SRK KRGTPRTWQSHY
Sbjct: 288 SRKKKRGTPRTWQSHY 303

[Close]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match: A0A3S9JIG7 (Transport membrane protein OS=Cucumis melo var. momordica OX=2034244 GN=mttB PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 65/76 (85.53%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF LFT ALSTPPDIWCQIVA FLIS I+ELAIFVAS VQVRSEGW SGM+L KELTA+
Sbjct: 228 MVFPLFTAALSTPPDIWCQIVAPFLISLILELAIFVASIVQVRSEGWTSGMRLRKELTAR 287

Query: 61  SRKNKRGTPRTWQSHY 77
           SRK KRGTPRTWQSHY
Sbjct: 288 SRKKKRGTPRTWQSHY 303

[Close]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match: A0A5H2V7Z3 (Twin-arginine translocation protein OS=Turritis glabra OX=63678 GN=tatC PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF L T ALSTPPDIWCQIVA FLIS IIELAIFVA  VQVR EGW SGM   +E  + 
Sbjct: 54  MVFPLLTAALSTPPDIWCQIVARFLISLIIELAIFVALIVQVREEGWTSGM---RESGSI 113

Query: 61  SRKNKRGTPRTWQSHY 77
            +K K   PRTWQS+Y
Sbjct: 114 EKKKKSSPPRTWQSNY 126

[Close]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match: A0A2L1DEL6 (Transport membrane protein (Fragment) OS=Arabis alpina OX=50452 GN=mttB PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 52/76 (68.42%), Postives = 56/76 (73.68%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF L T ALSTPPDIWCQIVA FLIS IIELAIFVA  VQVR EGW SGM   +E  + 
Sbjct: 212 MVFPLLTAALSTPPDIWCQIVARFLISLIIELAIFVAFIVQVREEGWTSGM---RESGSI 271

Query: 61  SRKNKRGTPRTWQSHY 77
            +K K   PRTWQS+Y
Sbjct: 272 EKKKKSSPPRTWQSNY 284

[Close]
BLAST of Cmc02g0048581 vs. TAIR 10
Match: ATMG00570.1 (Sec-independent periplasmic protein translocase )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1   MVFSLFTTALSTPPDIWCQIVAYFLISFIIELAIFVASFVQVRSEGWMSGMKLCKELTAQ 60
           MVF L T ALSTPPDIWCQIVA FLIS IIELAIFVAS VQVR EGW SGM   +E  + 
Sbjct: 212 MVFPLLTAALSTPPDIWCQIVARFLISLIIELAIFVASIVQVREEGWTSGM---RESGSI 271

Query: 61  SRKNKRG-TPRTWQSHY 77
            +KNK    PRTWQS+Y
Sbjct: 272 EKKNKSSPPPRTWQSNY 285

The following BLAST results are available for this feature:
BLAST of Cmc02g0048581 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059749.12.2e-2685.53transport membrane protein [Cucumis melo var. makuwa][more]
AEN56110.12.2e-2685.53transport membrane protein [Cucumis melo subsp. melo] >AZP40289.1 transport memb... [more]
XP_030925259.16.5e-1871.05LOW QUALITY PROTEIN: uncharacterized protein LOC115952294 [Quercus lobata][more]
YP_009466036.11.6e-1668.42transport membrane protein, partial [Arabis alpina] >AVC55464.1 transport membra... [more]
BBB05373.11.6e-1668.42twin-arginine translocation protein [Turritis glabra][more]
BLAST of Cmc02g0048581 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P933121.4e-1868.83Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16... [more]
BLAST of Cmc02g0048581 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V1T21.1e-2685.53Transport membrane protein (Mitochondrion) OS=Cucumis melo var. makuwa OX=119469... [more]
G3EU261.1e-2685.53Transport membrane protein OS=Cucumis melo subsp. melo OX=412675 GN=mttB PE=3 SV... [more]
A0A3S9JIG71.1e-2685.53Transport membrane protein OS=Cucumis melo var. momordica OX=2034244 GN=mttB PE=... [more]
A0A5H2V7Z37.7e-1768.42Twin-arginine translocation protein OS=Turritis glabra OX=63678 GN=tatC PE=3 SV=... [more]
A0A2L1DEL67.7e-1768.42Transport membrane protein (Fragment) OS=Arabis alpina OX=50452 GN=mttB PE=3 SV=... [more]
BLAST of Cmc02g0048581 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00570.11.5e-2070.13Sec-independent periplasmic protein translocase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0048581.1Cmc02g0048581.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0065002 intracellular protein transmembrane transport
biological_process GO:0043953 protein transport by the Tat complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0033281 TAT protein transport complex
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0009977 proton motive force dependent protein transmembrane transporter activity