Cmc02g0048481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0048481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 13995228 .. 13996169 (-)
RNA-Seq Expression	Cmc02g0048481
Synteny	Cmc02g0048481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGGAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAACGTTCATTTAACCCCTTATGATGGTGTTCCTCTTGAAAATGTCAGTCTGTATCGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCACCCAGACATTGCATATGTTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGTCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGAGATCCCACTGATCGGCGTTCTACAACTGGTTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCACCGAACTTTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTCCCACTCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATCCGTCATCATCTCCTAAGCCACACACTTCTTCTGCAACCTGTCTCCACCACTGAGCAACCAGCTGATATCTTCACCAAAGCCTTACCATCTACTCGCTTCAATCAAATACGTACCAAACTGAGGCTGACAGCTACTCTACCACCTTGA

mRNA sequence

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGGAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAACGTTCATTTAACCCCTTATGATGGTGTTCCTCTTGAAAATGTCAGTCTGTATCGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCACCCAGACATTGCATATGTTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGTCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGAGATCCCACTGATCGGCGTTCTACAACTGGTTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCACCGAACTTTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTCCCACTCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATCCGTCATCATCTCCTAAGCCACACACTTCTTCTGCAACCTGTCTCCACCACTGAGCAACCAGCTGATATCTTCACCAAAGCCTTACCATCTACTCGCTTCAATCAAATACGTACCAAACTGAGGCTGACAGCTACTCTACCACCTTGA

Coding sequence (CDS)

ATGATTATCACTGGTAATGATCCACAGGCCATATCCGATCTCCAACACTACCTTGGTCAACATTTTGAAATGGAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGGCGCTCGGACGGGTATCTATTGTCCCAAGCTAAATATGCCTCTGATCTTTTAGCCCGCTCAGGAATTACTGACTCTAACACAGCTTCAACGCCGTTAGATCCCAACGTTCATTTAACCCCTTATGATGGTGTTCCTCTTGAAAATGTCAGTCTGTATCGGCAACTCGTTGGCAGTCTCATCTATCTAACAGTGACTCACCCAGACATTGCATATGTTGTTCACATTGTTAGCCAATTTATGGCTGCTCCTCGAACCATCCACTTTACTGTCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATCTGGCTATTTCGATGCAGATTGGGCTGGAGATCCCACTGATCGGCGTTCTACAACTGGTTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAAGAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATGCTACCACCGAACTTTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTCCCACTCTCCTTCATTGTGACAATCGTAGTGCCATCCAAATTGCCCACAATGATGTTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATCCGTCATCATCTCCTAAGCCACACACTTCTTCTGCAACCTGTCTCCACCACTGAGCAACCAGCTGATATCTTCACCAAAGCCTTACCATCTACTCGCTTCAATCAAATACGTACCAAACTGAGGCTGACAGCTACTCTACCACCTTGA

Protein sequence

MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARSGITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFMAAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQIRTKLRLTATLPP

Homology

[Close]

BLAST of Cmc02g0048481 vs. NCBI nr
Match: TYK10332.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 629.4 bits (1622), Expect = 1.7e-176
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 949  MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1008

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM
Sbjct: 1009 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 1068

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY
Sbjct: 1069 AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 1128

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1129 LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 1188

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ
Sbjct: 1189 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 1248

Query: 301  IRTKLRLTATLPP 314
            IRTKLRLTATLPP
Sbjct: 1249 IRTKLRLTATLPP 1261

[Close]

BLAST of Cmc02g0048481 vs. NCBI nr
Match: TYK21532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 610.9 bits (1574), Expect = 6.1e-171
Identity = 304/313 (97.12%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1101

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSH LLLQPVSTTEQPADIFTKALPSTRFNQ
Sbjct: 1102 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHILLLQPVSTTEQPADIFTKALPSTRFNQ 1161

Query: 301  IRTKLRLTATLPP 314
            IR KL+LTATLPP
Sbjct: 1162 IRIKLKLTATLPP 1174

[Close]

BLAST of Cmc02g0048481 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 610.1 bits (1572), Expect = 1.0e-170
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTATLPP
Sbjct: 1322 IRTKLKLTATLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. NCBI nr
Match: KAA0041601.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0065379.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12000.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 610.1 bits (1572), Expect = 1.0e-170
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTATLPP
Sbjct: 1322 IRTKLKLTATLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. NCBI nr
Match: TYK04714.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 608.6 bits (1568), Expect = 3.0e-170
Identity = 302/313 (96.49%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTA+LPP
Sbjct: 1322 IRTKLKLTASLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 7.2e-66
Identity = 137/312 (43.91%), Postives = 186/312 (59.62%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            ++ITGNDP  + +    L Q F ++D   L+YFLG+E  R   G  LSQ +Y  DLLAR+
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
             +  +   +TP+ P+  L+ Y G  L + + YR +VGSL YL  T PDI+Y V+ +SQFM
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
              P   H   + RILRY+ GT  HG+     ++L L  Y DADWAGD  D  ST GY  Y
Sbjct: 1274 HMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVY 1333

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LG   ISW SKKQ  V RSSTE+EYR++A+ ++E+ W+  LL ++G+    P +++CDN 
Sbjct: 1334 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNV 1393

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
             A  +  N VFH R KHI  D HFIR+ + S  L +  VST +Q AD  TK L  T F  
Sbjct: 1394 GATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQN 1453

Query: 301  IRTKLRLTATLP 313
              +K+ +T   P
Sbjct: 1454 FASKIGVTRVPP 1465

[Close]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.2e-62
Identity = 130/312 (41.67%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            ++ITGND   +      L Q F +++   L+YFLG+E  R   G  LSQ +Y  DLLAR+
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
             +  +   +TP+  +  LT + G  L + + YR +VGSL YL  T PD++Y V+ +SQ+M
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1256

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
              P   H+  + R+LRY+ GT  HG+     ++L L  Y DADWAGD  D  ST GY  Y
Sbjct: 1257 HMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVY 1316

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LG   ISW SKKQ  V RSSTE+EYR++A+ ++EL W+  LL ++G+    P +++CDN 
Sbjct: 1317 LGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNV 1376

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
             A  +  N VFH R KHI  D HFIR+ + S  L +  VST +Q AD  TK L    F  
Sbjct: 1377 GATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQN 1436

Query: 301  IRTKLRLTATLP 313
               K+ +    P
Sbjct: 1437 FSRKIGVIKVPP 1448

[Close]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-50
Identity = 111/311 (35.69%), Postives = 181/311 (58.20%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            ++I   D   +++ + YL + F M DL  + +F+G+ +  + D   LSQ+ Y   +L++ 
Sbjct: 1091 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKF 1150

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTV-THPDIAYVVHIVSQF 120
             + + N  STPL   ++    +     N    R L+G L+Y+ + T PD+   V+I+S++
Sbjct: 1151 NMENCNAVSTPLPSKINYELLNSDEDCNTPC-RSLIGCLMYIMLCTRPDLTTAVNILSRY 1210

Query: 121  MAAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSL--VLSGYFDADWAGDPTDRRSTTGY 180
             +   +  +  + R+LRY+KGT+   L F    +    + GY D+DWAG   DR+STTGY
Sbjct: 1211 SSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGY 1270

Query: 181  CFYLGD-SLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLH 240
             F + D +LI W +K+Q+ V+ SSTE+EY AL +A  E LWL++LL  + +  + P  ++
Sbjct: 1271 LFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIY 1330

Query: 241  CDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPST 300
             DN+  I IA+N   H+R KHI+   HF R  + ++ + L+ + T  Q ADIFTK LP+ 
Sbjct: 1331 EDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAA 1390

Query: 301  RFNQIRTKLRL 308
            RF ++R KL L
Sbjct: 1391 RFVELRDKLGL 1400

[Close]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.0e-48
Identity = 119/307 (38.76%), Postives = 179/307 (58.31%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEV--SRRSDGYLLSQAKYASDLLA 60
            M+I G D   I+ L+  L + F+M+DLG     LG+++   R S    LSQ KY   +L 
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   RSGITDSNTASTPLDPNVHLT----PYDGVPLENVSL--YRQLVGSLIYLTV-THPDIAY 120
            R  + ++   STPL  ++ L+    P       N++   Y   VGSL+Y  V T PDIA+
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 121  VVHIVSQFMAAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDR 180
             V +VS+F+  P   H+  V  ILRY++GT G  L F   S  +L GY DAD AGD  +R
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNR 1191

Query: 181  RSTTGYCFYLGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQG 240
            +S+TGY F      ISW+SK Q  V+ S+TE+EY A  +   E++WL+  L ++G+ Q+ 
Sbjct: 1192 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK- 1251

Query: 241  PTLLHCDNRSAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTK 299
              +++CD++SAI ++ N ++H RTKHI+   H+IR  +   +L +  +ST E PAD+ TK
Sbjct: 1252 EYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTK 1311

[Close]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-44
Identity = 95/217 (43.78%), Postives = 135/217 (62.21%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
           +++TG+    ++ L   L   F M+DLG ++YFLG+++     G  LSQ KYA  +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
           G+ D    STPL   ++ +        + S +R +VG+L YLT+T PDI+Y V+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
             P    F ++ R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 181 LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLW 218
           LG ++ISW +K+Q  VSRSSTE+EYRALA    EL W
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL
Match: A0A5D3CGF8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00050 PE=4 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 8.0e-177
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 949  MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1008

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM
Sbjct: 1009 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 1068

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY
Sbjct: 1069 AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 1128

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1129 LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 1188

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ
Sbjct: 1189 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 1248

Query: 301  IRTKLRLTATLPP 314
            IRTKLRLTATLPP
Sbjct: 1249 IRTKLRLTATLPP 1261

[Close]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL
Match: A0A5D3DD70 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00150 PE=4 SV=1)

HSP 1 Score: 610.9 bits (1574), Expect = 2.9e-171
Identity = 304/313 (97.12%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDPQAISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 862  MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 921

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 922  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 981

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 982  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1041

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1042 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1101

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSH LLLQPVSTTEQPADIFTKALPSTRFNQ
Sbjct: 1102 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHILLLQPVSTTEQPADIFTKALPSTRFNQ 1161

Query: 301  IRTKLRLTATLPP 314
            IR KL+LTATLPP
Sbjct: 1162 IRIKLKLTATLPP 1174

[Close]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 5.0e-171
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTATLPP
Sbjct: 1322 IRTKLKLTATLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL
Match: A0A5A7T8F2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00410 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 5.0e-171
Identity = 303/313 (96.81%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTATLPP
Sbjct: 1322 IRTKLKLTATLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL
Match: A0A5D3C0D7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00020 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 1.5e-170
Identity = 302/313 (96.49%), Postives = 306/313 (97.76%), Query Frame = 0


Query: 1    MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
            MIITGNDP AISDLQHYLGQHFEM+DLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS
Sbjct: 1022 MIITGNDPHAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 1081

Query: 61   GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
            GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVT PDIAY VHIVSQFM
Sbjct: 1082 GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1141

Query: 121  AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            AAPRTIHFT VLRILRYVKGTLGHGLQFSSQSSLVLSGY DADWAGDPTDRRSTTGYCFY
Sbjct: 1142 AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFY 1201

Query: 181  LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
            LGDSLISWRSKKQSVVSRSSTESEYRALADAT ELLWLRWLLADMGVPQQGPTLLHCDNR
Sbjct: 1202 LGDSLISWRSKKQSVVSRSSTESEYRALADATAELLWLRWLLADMGVPQQGPTLLHCDNR 1261

Query: 241  SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQPVSTTEQPADIFTKALPSTRFNQ 300
            SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQ +STTEQPADIFTKALPSTRFNQ
Sbjct: 1262 SAIQIAHNDVFHERTKHIENDCHFIRHHLLSHTLLLQSISTTEQPADIFTKALPSTRFNQ 1321

Query: 301  IRTKLRLTATLPP 314
            IRTKL+LTA+LPP
Sbjct: 1322 IRTKLKLTASLPP 1334

[Close]

BLAST of Cmc02g0048481 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 257.3 bits (656), Expect = 1.6e-68
Identity = 128/266 (48.12%), Postives = 177/266 (66.54%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
           +II  N+  A+ +L+  L   F++ DLG L YFLGLE++R + G  + Q KYA DLL  +
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
           G+     +S P+DP+V  + + G    +   YR+L+G L+YL +T  DI++ V+ +SQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 121 AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
            APR  H   V++IL Y+KGT+G GL +SSQ+ + L  + DA +      RRST GYC +
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 181 LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLWLRWLLADMGVPQQGPTLLHCDNR 240
           LG SLISW+SKKQ VVS+SS E+EYRAL+ AT E++WL     ++ +P   PTLL CDN 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 241 SAIQIAHNDVFHERTKHIENDCHFIR 267
           +AI IA N VFHERTKHIE+DCH +R
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVR 552

[Close]

BLAST of Cmc02g0048481 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-45
Identity = 95/217 (43.78%), Postives = 135/217 (62.21%), Query Frame = 0


Query: 1   MIITGNDPQAISDLQHYLGQHFEMEDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 60
           +++TG+    ++ L   L   F M+DLG ++YFLG+++     G  LSQ KYA  +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITDSNTASTPLDPNVHLTPYDGVPLENVSLYRQLVGSLIYLTVTHPDIAYVVHIVSQFM 120
           G+ D    STPL   ++ +        + S +R +VG+L YLT+T PDI+Y V+IV Q M
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 121 AAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGYFDADWAGDPTDRRSTTGYCFY 180
             P    F ++ R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTF 189

Query: 181 LGDSLISWRSKKQSVVSRSSTESEYRALADATTELLW 218
           LG ++ISW +K+Q  VSRSSTE+EYRALA    EL W
Sbjct: 190 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc02g0048481 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 100 IYLTVTHPDIAYVVHIVSQFMAAPRTIHFTVVLRILRYVKGTLGHGLQFSSQSSLVLSGY 159
           +YLT+T PD+ + V+ +SQF +A RT     V ++L YVKGT+G GL +S+ S L L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 160 FDADWAGDPTDRRSTTGYC 179
            D+DWA  P  RRS TG+C
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc02g0048481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10332.1	1.7e-176	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21532.1	6.1e-171	97.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037745.1	1.0e-170	96.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041601.1	1.0e-170	96.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04714.1	3.0e-170	96.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0048481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	7.2e-66	43.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.2e-62	41.67	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.2e-50	35.69	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	4.0e-48	38.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	1.6e-44	43.78	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0048481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGF8	8.0e-177	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DD70	2.9e-171	97.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	5.0e-171	96.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T8F2	5.0e-171	96.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C0D7	1.5e-170	96.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0048481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.6e-68	48.12	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.1e-45	43.78	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.1e-16	48.10	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 6.1E-13 score: 48.9
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 16..222
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..222
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 158..295 e-value: 4.68149E-81 score: 240.063
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 8..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0048481.1	Cmc02g0048481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding