Cmc02g0048431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0048431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr02: 13955098 .. 13955716 (+)
RNA-Seq Expression	Cmc02g0048431
Synteny	Cmc02g0048431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGACTCGGAAATTATTCGATCGAGTGTCAGCCCATTCTCCAGCCCGATGATCCTAGTGGAAAAGAAAGACGACGGTTGCCAGTTTTGCGTGGACTATAGGGCGTTGAATAGAGCGACAGTACCCGATAAGTTCCCAGTCCAAATGATTGACGAGCTGCTGGATGAGCTGCACGGGGCTAGTATTTTTTCCAAAATCGATTTGAAGTCGGAGTACCATCATATCCGAGTGCGAGAGGAGGATGTAAAGAAAACAGCTTTTAGAACGCACGAGGGGCATTACGAATTTCTGGTTATGCCATTTGGGCTCACAAACAAACTGGCGACATTCCAAGCCCATATGAACCAGGTTTTCCGACCTTATTTACGTAAGTTTATACTGATGTTTTTTTTATGATATCCTTGTGTATAGTAAGGATGCAGAATCTCACTTGGAGCACCTCATGATGGTGTTTAGCCTACTAAGGGAGCATAGCCTTTTTGCCGACCATAAGAAGTTCCATTTCGGGAAGGAACGCATAGAGTATTTGGGGCATTGCGTGTCTGAAAAGGGGGTTGAAGCAGACCAAGAAAAAAGATCAGAAAAATGTTGGAAAGGTCGATTCCGAAGAACTTGA

mRNA sequence

ATGCTCGACTCGGAAATTATTCGATCGAGTGTCAGCCCATTCTCCAGCCCGATGATCCTAGTGGAAAAGAAAGACGACGGTTGCCAGTTTTGCGTGGACTATAGGGCGTTGAATAGAGCGACAGTACCCGATAAGTTCCCAGTCCAAATGATTGACGAGCTGCTGGATGAGCTGCACGGGGCTAGTATTTTTTCCAAAATCGATTTGAAGTCGGAGTACCATCATATCCGAGTGCGAGAGGAGGATGTAAAGAAAACAGCTTTTAGAACGCACGAGGGGCATTACGAATTTCTGGTTATGCCATTTGGGCTCACAAACAAACTGGCGACATTCCAAGCCCATATGAACCAGGTTTTCCGACCTTATTTACGTAATAAGGATGCAGAATCTCACTTGGAGCACCTCATGATGGTGTTTAGCCTACTAAGGGAGCATAGCCTTTTTGCCGACCATAAGAAGTTCCATTTCGGGAAGGAACGCATAGAGTATTTGGGGCATTGCGTGTCTGAAAAGGGGGTTGAAGCAGACCAAGAAAAAAGATCAGAAAAATGTTGGAAAGGTCGATTCCGAAGAACTTGA

Coding sequence (CDS)

ATGCTCGACTCGGAAATTATTCGATCGAGTGTCAGCCCATTCTCCAGCCCGATGATCCTAGTGGAAAAGAAAGACGACGGTTGCCAGTTTTGCGTGGACTATAGGGCGTTGAATAGAGCGACAGTACCCGATAAGTTCCCAGTCCAAATGATTGACGAGCTGCTGGATGAGCTGCACGGGGCTAGTATTTTTTCCAAAATCGATTTGAAGTCGGAGTACCATCATATCCGAGTGCGAGAGGAGGATGTAAAGAAAACAGCTTTTAGAACGCACGAGGGGCATTACGAATTTCTGGTTATGCCATTTGGGCTCACAAACAAACTGGCGACATTCCAAGCCCATATGAACCAGGTTTTCCGACCTTATTTACGTAATAAGGATGCAGAATCTCACTTGGAGCACCTCATGATGGTGTTTAGCCTACTAAGGGAGCATAGCCTTTTTGCCGACCATAAGAAGTTCCATTTCGGGAAGGAACGCATAGAGTATTTGGGGCATTGCGTGTCTGAAAAGGGGGTTGAAGCAGACCAAGAAAAAAGATCAGAAAAATGTTGGAAAGGTCGATTCCGAAGAACTTGA

Protein sequence

MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHGASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFRPYLRNKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHCVSEKGVEADQEKRSEKCWKGRFRRT

Homology

[Close]

BLAST of Cmc02g0048431 vs. NCBI nr
Match: TYK10338.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 7.5e-79
Identity = 152/162 (93.83%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFP+QMIDELLDELHG
Sbjct: 369 MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPIQMIDELLDELHG 428

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQ   
Sbjct: 429 ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQ--- 488

Query: 121 PYLRNKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 163
                 DAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE
Sbjct: 489 ------DAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 521

[Close]

BLAST of Cmc02g0048431 vs. NCBI nr
Match: KAA0037087.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06557.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 152/192 (79.17%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDS I R SVSPFSSP+I V+KKD G +FCVDYRALNRA VPDKFP+ MIDEL+DELHG
Sbjct: 78  MLDSGIFRPSVSPFSSPVIHVKKKDGGWRFCVDYRALNRAKVPDKFPIPMIDELVDELHG 137

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVREEDVKKTAFR HEGHYEFLVMPFGLT+  ATFQA MNQVFR
Sbjct: 138 ASIFSKIDLKSGYHQIRVREEDVKKTAFRMHEGHYEFLVMPFGLTSAPATFQALMNQVFR 197

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             +KDAESHLEHL +VFSLLREHSLFA+ KK HFGKERIEYLGH 
Sbjct: 198 PYLRKFILVFFDDILVYSKDAESHLEHLTLVFSLLREHSLFANRKKCHFGKERIEYLGHW 257

[Close]

BLAST of Cmc02g0048431 vs. NCBI nr
Match: KAA0032774.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK23942.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 151/192 (78.65%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDS IIR SVSPFSS MILV+KKD GC+FCVDYRALNRATVPDKFP+ MIDELLDEL+G
Sbjct: 153 MLDSGIIRPSVSPFSSLMILVKKKDGGCRFCVDYRALNRATVPDKFPIPMIDELLDELNG 212

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVREEDV+KTAFRTHEGHYEFL+ PFGLTN  ATFQA MNQVF 
Sbjct: 213 ASIFSKIDLKSGYHQIRVREEDVRKTAFRTHEGHYEFLIKPFGLTNAPATFQALMNQVFI 272

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             NKDAE+HLEHLM+VF LLREHSLFA+ KK HFGKERIEYLGH 
Sbjct: 273 PYLRKFMLVFFDVILVYNKDAETHLEHLMVVFRLLREHSLFANRKKCHFGKERIEYLGHW 332

[Close]

BLAST of Cmc02g0048431 vs. NCBI nr
Match: KAA0056798.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 145/192 (75.52%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           ML   IIR SVSPFSSP+ILV+KKD G +FCVDYRALNRATVPDKFP+ MIDELLDELHG
Sbjct: 81  MLAMGIIRPSVSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELHG 140

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           A+IFSKIDLKS YH IRVR+EDVKKTAFRTHEGHYEF+VMPF LTN  ATFQA MNQVFR
Sbjct: 141 ATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPATFQALMNQVFR 200

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             +KD ESHLEHL +VF+LLREHSLFA+ KK HFG+E+IEYLGH 
Sbjct: 201 PYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHFGREQIEYLGHW 260

[Close]

BLAST of Cmc02g0048431 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-71
Identity = 143/192 (74.48%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           ML S IIR S SPFSSP+ILV+KKD G +FCVDYRALNRATVPDKFP+ MIDELLDEL G
Sbjct: 626 MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVR+ED+ KTAFRTHEGHYEFLVMPFGLTN  ATFQA MNQVFR
Sbjct: 686 ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             ++D E+HLEHL MVF LLR+H LFA+ +K HF K+RIEYLGH 
Sbjct: 746 PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

[Close]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           +LD++ I  S SP SSP++LV KKD   + CVDYR LN+AT+ D FP+  ID LL  +  
Sbjct: 619 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 678

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           A IF+ +DL S YH I +  +D  KTAF T  G YE+ VMPFGL N  +TF  +M   FR
Sbjct: 679 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 738

Query: 121 P-----------YLRNKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHCVS 180
                        + ++  E H +HL  V   L+  +L    KK  F  E  E+LG+ + 
Sbjct: 739 DLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIG 798

[Close]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-31
Identity = 76/190 (40.00%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           +LD++ I  S SP SSP++LV KKD   + CVDYR LN+AT+ D FP+  ID LL  +  
Sbjct: 645 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 704

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           A IF+ +DL S YH I +  +D  KTAF T  G YE+ VMPFGL N  +TF  +M   FR
Sbjct: 705 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 764

Query: 121 P-----------YLRNKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHCVS 180
                        + ++  E H +HL  V   L+  +L    KK  F  E  E+LG+ + 
Sbjct: 765 DLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIG 824

[Close]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-30
Identity = 74/197 (37.56%), Postives = 106/197 (53.81%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGC-----QFCVDYRALNRATVPDKFPVQMIDELL 60
           ML+  +IR S SP++SP  +V KK D       +  +DYR LN  T+PD++P+  +DE+L
Sbjct: 229 MLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEIL 288

Query: 61  DELHGASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHM 120
            +L     F+ IDL   +H I + EE + KTAF T  GHYE+L MPFGL N  ATFQ  M
Sbjct: 289 GKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCM 348

Query: 121 NQVFRPYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 180
           N + RP L              +     HL  + +VF+ L + +L     K  F K+   
Sbjct: 349 NNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEAN 408

[Close]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-30
Identity = 76/197 (38.58%), Postives = 108/197 (54.82%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGC-----QFCVDYRALNRATVPDKFPVQMIDELL 60
           ML+  IIR+S SP++SP+ +V KK D       +  +DYR LN  TV D+ P+  +DE+L
Sbjct: 230 MLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEIL 289

Query: 61  DELHGASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHM 120
            +L   + F+ IDL   +H I +  E V KTAF T  GHYE+L MPFGL N  ATFQ  M
Sbjct: 290 GKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCM 349

Query: 121 NQVFRPYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 180
           N + RP L              +   + HL+ L +VF  L + +L     K  F K+   
Sbjct: 350 NDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETT 409

[Close]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.9e-27
Identity = 68/197 (34.52%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKK-----DDGCQFCVDYRALNRATVPDKFPVQMIDELL 60
           +L   IIR S SP++SP+ +V KK     +   +  VD++ LN  T+PD +P+  I+  L
Sbjct: 146 LLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATL 205

Query: 61  DELHGASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHM 120
             L  A  F+ +DL S +H I ++E D+ KTAF T  G YEFL +PFGL N  A FQ  +
Sbjct: 206 ASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMI 265

Query: 121 NQVFRPYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 180
           + + R ++              ++D ++H ++L +V + L + +L  + +K HF   ++E
Sbjct: 266 DDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVE 325

[Close]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL
Match: A0A5D3CGJ1 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00130 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.6e-79
Identity = 152/162 (93.83%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFP+QMIDELLDELHG
Sbjct: 369 MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPIQMIDELLDELHG 428

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQ   
Sbjct: 429 ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQ--- 488

Query: 121 PYLRNKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 163
                 DAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE
Sbjct: 489 ------DAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIE 521

[Close]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL
Match: A0A5A7T6A3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00140 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.4e-76
Identity = 152/192 (79.17%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDS I R SVSPFSSP+I V+KKD G +FCVDYRALNRA VPDKFP+ MIDEL+DELHG
Sbjct: 78  MLDSGIFRPSVSPFSSPVIHVKKKDGGWRFCVDYRALNRAKVPDKFPIPMIDELVDELHG 137

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVREEDVKKTAFR HEGHYEFLVMPFGLT+  ATFQA MNQVFR
Sbjct: 138 ASIFSKIDLKSGYHQIRVREEDVKKTAFRMHEGHYEFLVMPFGLTSAPATFQALMNQVFR 197

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             +KDAESHLEHL +VFSLLREHSLFA+ KK HFGKERIEYLGH 
Sbjct: 198 PYLRKFILVFFDDILVYSKDAESHLEHLTLVFSLLREHSLFANRKKCHFGKERIEYLGHW 257

[Close]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL
Match: A0A5A7SNK3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00210 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.3e-76
Identity = 151/192 (78.65%), Postives = 161/192 (83.85%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           MLDS IIR SVSPFSS MILV+KKD GC+FCVDYRALNRATVPDKFP+ MIDELLDEL+G
Sbjct: 153 MLDSGIIRPSVSPFSSLMILVKKKDGGCRFCVDYRALNRATVPDKFPIPMIDELLDELNG 212

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVREEDV+KTAFRTHEGHYEFL+ PFGLTN  ATFQA MNQVF 
Sbjct: 213 ASIFSKIDLKSGYHQIRVREEDVRKTAFRTHEGHYEFLIKPFGLTNAPATFQALMNQVFI 272

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             NKDAE+HLEHLM+VF LLREHSLFA+ KK HFGKERIEYLGH 
Sbjct: 273 PYLRKFMLVFFDVILVYNKDAETHLEHLMVVFRLLREHSLFANRKKCHFGKERIEYLGHW 332

[Close]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL
Match: A0A5A7UNX8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00450 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.6e-73
Identity = 145/192 (75.52%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           ML   IIR SVSPFSSP+ILV+KKD G +FCVDYRALNRATVPDKFP+ MIDELLDELHG
Sbjct: 81  MLAMGIIRPSVSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELHG 140

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           A+IFSKIDLKS YH IRVR+EDVKKTAFRTHEGHYEF+VMPF LTN  ATFQA MNQVFR
Sbjct: 141 ATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPATFQALMNQVFR 200

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             +KD ESHLEHL +VF+LLREHSLFA+ KK HFG+E+IEYLGH 
Sbjct: 201 PYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHFGREQIEYLGHW 260

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BLAST of Cmc02g0048431 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 143/192 (74.48%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MLDSEIIRSSVSPFSSPMILVEKKDDGCQFCVDYRALNRATVPDKFPVQMIDELLDELHG 60
           ML S IIR S SPFSSP+ILV+KKD G +FCVDYRALNRATVPDKFP+ MIDELLDEL G
Sbjct: 626 MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61  ASIFSKIDLKSEYHHIRVREEDVKKTAFRTHEGHYEFLVMPFGLTNKLATFQAHMNQVFR 120
           ASIFSKIDLKS YH IRVR+ED+ KTAFRTHEGHYEFLVMPFGLTN  ATFQA MNQVFR
Sbjct: 686 ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121 PYLR-------------NKDAESHLEHLMMVFSLLREHSLFADHKKFHFGKERIEYLGHC 180
           PYLR             ++D E+HLEHL MVF LLR+H LFA+ +K HF K+RIEYLGH 
Sbjct: 746 PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

The following BLAST results are available for this feature:

BLAST of Cmc02g0048431 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10338.1	7.5e-79	93.83	Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var....	[more]
KAA0037087.1	1.3e-75	79.17	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06557.1 Ty3/gyp...	[more]
KAA0032774.1	1.7e-75	78.65	putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK23942.1 put...	[more]
KAA0056798.1	1.4e-72	75.52	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Tran...	[more]
TYK21209.1	2.6e-71	74.48	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0048431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.7e-31	40.00	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.7e-31	40.00	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	5.1e-30	37.56	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	8.7e-30	38.58	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	6.9e-27	34.52	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGJ1	3.6e-79	93.83	Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va...	[more]
A0A5A7T6A3	6.4e-76	79.17	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SNK3	8.3e-76	78.65	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7UNX8	6.6e-73	75.52	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BD16	1.2e-71	74.48	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc02g0048431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 46..168 e-value: 8.7E-57 score: 193.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 31..166 e-value: 1.1E-10 score: 41.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..106 e-value: 8.7E-57 score: 193.8
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 1..122
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..122
None	No IPR available	CDD	cd01647	RT_LTR	coord: 6..168 e-value: 1.95025E-66 score: 199.744
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0048431.1	Cmc02g0048431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding