Cmc02g0048201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0048201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr02: 13709697 .. 13710104 (+)
RNA-Seq Expression	Cmc02g0048201
Synteny	Cmc02g0048201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGGAATAGATTATGAAGAAGTTTTCTCTTCTATTGCCATGATAAAGTCGATTAGAATACTTTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATACAACATTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACGGTCAAGAACAAAAGATTTGTAA

mRNA sequence

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGGAATAGATTATGAAGAAGTTTTCTCTTCTATTGCCATGATAAAGTCGATTAGAATACTTTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATACAACATTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACGGTCAAGAACAAAAGATTTGTAA

Coding sequence (CDS)

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTTCAATTCTGTCTGGACTCTAGTAGATCAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGGAATAGATTATGAAGAAGTTTTCTCTTCTATTGCCATGATAAAGTCGATTAGAATACTTTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATACAACATTTTTGAATGGAAATCTTGAAGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACGGTCAAGAACAAAAGATTTGTAA

Protein sequence

MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQPEGFIRSRTKDL

Homology

[Close]

BLAST of Cmc02g0048201 vs. NCBI nr
Match: KAA0050040.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 71  MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 130

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY
Sbjct: 131 LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 190

Query: 121 MVQPEGFIRSRTKDL 136
           MVQPEGFIRSRTKDL
Sbjct: 191 MVQPEGFIRSRTKDL 205

[Close]

BLAST of Cmc02g0048201 vs. NCBI nr
Match: TYK02298.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAM+LEMESM+FNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 221 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 280

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQ+E +DY+E FS +AM+KSIRILLSIATFYDYEIWQMDV TTFLN NLEESIY
Sbjct: 281 LVAKGYTQREEVDYKETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTTFLNENLEESIY 340

Query: 121 MVQPEGFIR 130
           M QPEGFI+
Sbjct: 341 MAQPEGFIK 349

[Close]

BLAST of Cmc02g0048201 vs. NCBI nr
Match: KAA0060572.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAM+LEMESM+FNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 239 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 298

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQ+E +DY+E FS +AM+KSIRILLSIATFYDYEIWQMDV TTFLN NLEESIY
Sbjct: 299 LVAKGYTQREEVDYKETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTTFLNENLEESIY 358

Query: 121 MVQPEGFIR 130
           M QPEGFI+
Sbjct: 359 MAQPEGFIK 367

[Close]

BLAST of Cmc02g0048201 vs. NCBI nr
Match: KAA0037081.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK06570.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEMESMY NSVWTLVDQPN  KPIGCKWIYKRKRDQA KVQTFKAR
Sbjct: 1   MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPNHKKPIGCKWIYKRKRDQASKVQTFKAR 60

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEG+DYEE FS +AM+KSIRILLSIATFYDYEIWQMDV T FLNGNLEESIY
Sbjct: 61  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPEGFIR 130
           +VQPEGFI+
Sbjct: 121 IVQPEGFIQ 129

[Close]

BLAST of Cmc02g0048201 vs. NCBI nr
Match: KAA0051500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61
Identity = 115/129 (89.15%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIK MDLEMESMY NSVWTLVDQPN+VKPI CKW+YKRKRDQAGKVQTF+AR
Sbjct: 58  MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQAR 117

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEGIDYEE FS +AMIKSIRI+LSIATFYDYEIW MDV TTFLNGNL+ESIY
Sbjct: 118 LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 177

Query: 121 MVQPEGFIR 130
           MVQPEGFI+
Sbjct: 178 MVQPEGFIQ 186

[Close]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 7   DQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGY 66
           +Q +KAM  EMES+  N  + LV+ P   +P+ CKW++K K+D   K+  +KARLV KG+
Sbjct: 824 NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 67  TQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQPEG 126
            QK+GID++E+FS +  + SIR +LS+A   D E+ Q+DV T FL+G+LEE IYM QPEG
Sbjct: 884 EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 127 F 128
           F
Sbjct: 944 F 944

[Close]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 7    DQWIKAMDLEMESMYFNSVWTLV-DQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 66
            D+W +AM  E+ +   N  W LV   P  V  +GC+WI+ +K +  G +  +KARLVAKG
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKG 1008

Query: 67   YTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQPE 126
            Y Q+ G+DY E FS +    SIRI+L +A    + I Q+DVN  FL G L + +YM QP 
Sbjct: 1009 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPP 1068

Query: 127  GFI 129
            GF+
Sbjct: 1069 GFV 1071

[Close]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-24
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 7    DQWIKAMDLEMESMYFNSVWTLV-DQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKG 66
            ++W  AM  E+ +   N  W LV   P+ V  +GC+WI+ +K +  G +  +KARLVAKG
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 67   YTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQPE 126
            Y Q+ G+DY E FS +    SIRI+L +A    + I Q+DVN  FL G L + +YM QP 
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 127  GFI 129
            GFI
Sbjct: 1086 GFI 1088

[Close]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 5    DCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 64
            D   W +A++ E+ +   N+ WT+  +P +   +  +W++  K ++ G    +KARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 65   GYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQP 124
            G+TQK  IDYEE F+ +A I S R +LS+   Y+ ++ QMDV T FLNG L+E IYM  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 125  EG 127
            +G
Sbjct: 1022 QG 1023

[Close]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQ 68
           W +AM  E++++  N  W LV  P +   +GCKW++K K    G +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIDYEEVFSSIAMIKSIRILLSIA 95
           +EGI + E +S +    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL
Match: A0A5A7U428 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00160 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.1e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 71  MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 130

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY
Sbjct: 131 LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 190

Query: 121 MVQPEGFIRSRTKDL 136
           MVQPEGFIRSRTKDL
Sbjct: 191 MVQPEGFIRSRTKDL 205

[Close]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL
Match: A0A5D3BTJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001090 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.2e-62
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAM+LEMESM+FNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 221 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 280

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQ+E +DY+E FS +AM+KSIRILLSIATFYDYEIWQMDV TTFLN NLEESIY
Sbjct: 281 LVAKGYTQREEVDYKETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTTFLNENLEESIY 340

Query: 121 MVQPEGFIR 130
           M QPEGFI+
Sbjct: 341 MAQPEGFIK 349

[Close]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL
Match: A0A5A7UXJ0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004410 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.2e-62
Identity = 115/129 (89.15%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAM+LEMESM+FNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 239 MNDVDCDQWIKAMNLEMESMFFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 298

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQ+E +DY+E FS +AM+KSIRILLSIATFYDYEIWQMDV TTFLN NLEESIY
Sbjct: 299 LVAKGYTQREEVDYKETFSHVAMLKSIRILLSIATFYDYEIWQMDVKTTFLNENLEESIY 358

Query: 121 MVQPEGFIR 130
           M QPEGFI+
Sbjct: 359 MAQPEGFIK 367

[Close]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL
Match: A0A5D3C5F1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00320 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 116/129 (89.92%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEMESMY NSVWTLVDQPN  KPIGCKWIYKRKRDQA KVQTFKAR
Sbjct: 1   MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPNHKKPIGCKWIYKRKRDQASKVQTFKAR 60

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEG+DYEE FS +AM+KSIRILLSIATFYDYEIWQMDV T FLNGNLEESIY
Sbjct: 61  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPEGFIR 130
           +VQPEGFI+
Sbjct: 121 IVQPEGFIQ 129

[Close]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL
Match: A0A5A7U8L5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00210 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 115/129 (89.15%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIK MDLEMESMY NSVWTLVDQPN+VKPI CKW+YKRKRDQAGKVQTF+AR
Sbjct: 58  MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWVYKRKRDQAGKVQTFQAR 117

Query: 61  LVAKGYTQKEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIY 120
           LVAKGYTQKEGIDYEE FS +AMIKSIRI+LSIATFYDYEIW MDV TTFLNGNL+ESIY
Sbjct: 118 LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 177

Query: 121 MVQPEGFIR 130
           MVQPEGFI+
Sbjct: 178 MVQPEGFIQ 186

[Close]

BLAST of Cmc02g0048201 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-29
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 9   WIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQ 68
           W  AMD E+ +M     W +   P + KPIGCKW+YK K +  G ++ +KARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  KEGIDYEEVFSSIAMIKSIRILLSIATFYDYEIWQMDVNTTFLNGNLEESIYMVQPEGF 128
           +EGID+ E FS +  + S++++L+I+  Y++ + Q+D++  FLNG+L+E IYM  P G+
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc02g0048201 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-14
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WIKAMDLEMESMYFNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQ 68
           W +AM  E++++  N  W LV  P +   +GCKW++K K    G +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIDYEEVFSSIAMIKSIRILLSIA 95
           +EGI + E +S +    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0048201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050040.1	1.1e-71	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK02298.1	1.7e-61	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060572.1	1.7e-61	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0037081.1	2.2e-61	89.92	gag/pol protein [Cucumis melo var. makuwa] >TYK06570.1 gag/pol protein [Cucumis ...	[more]
KAA0051500.1	2.2e-61	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0048201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-29	50.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.8e-24	43.90	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.0e-24	43.90	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.5e-23	40.98	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	4.0e-13	39.53	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0048201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U428	5.1e-72	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G0016...	[more]
A0A5D3BTJ6	8.2e-62	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00109...	[more]
A0A5A7UXJ0	8.2e-62	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00441...	[more]
A0A5D3C5F1	1.1e-61	89.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G0032...	[more]
A0A5A7U8L5	1.1e-61	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G0021...	[more]

BLAST of Cmc02g0048201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-29	45.38	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.8e-14	39.53	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 23..130 e-value: 6.6E-37 score: 127.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0048201.1	Cmc02g0048201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding