Cmc02g0047561 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0047561
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr02: 13099870 .. 13101989 (+)
RNA-Seq ExpressionCmc02g0047561
SyntenyCmc02g0047561
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACAAGACTTTCCTCAATTGAAACACACGTCTTCTTACTTCTTAATTTTCAATTACCAACTGCTACGAACGAATTATAAAATTGTTTTTCAAATTTGAACATAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAAATTTACCTCAATCGATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCAGCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTGTGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCCTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGATACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAATCTAGTTTGTTTTAACTCACATCGATGATGAAGAAATCTAGGGGTAATGTTTTTTTCTCTTTTCACTGCCATTGTATGCAAAAGGTTTTGTTGATTCAATTTTGATAATGAAGAGGATATGGGGATTTGTTTGGTCTGATCATGAACTTTGTTTTTTGTTTGCTATAAAGGTTTTTTGTGTTGTAGTGGGAAAATAAATGGAATAGAATTTTGATTTGGGGAACAATATGAGAGGAAAGGAATTATATTCTTTTTATCATCTGATCAAAGCAATATTTTCCCATCTCTTCTTCTTCTTCTTCTTTAATTCAAACACACCTTTTCCTTTTTCCTTCTCCAATATCTCTTCAAGAACCTTATCACTTTCGAATCATATTAAAAGCACAAATTTTTTTCTTTTTTTATTTTTTTCTCCTATTTTTACTTCATTTTTAAATGGAAAATATATATATTCTAACTCATGAAATAATAAAAATCAAATTTAGGAGTAATATCAATCTATACTTATAAATTTCGAGAGGATTTATCTATTTAGATCATGGAATGTATCGATTTATACTATGGACTTTTGTAATCGTATCAATGTACACTCTCTCTTACGTTTCATTTGAAAAAATATATGTGAAATTTAGAATTGTATCAATTAAACACTATCTTTCTTTAAATAAATAAATCCTCAACTTTCATAAATGAATTTATTTCGACTCTTCGACACAATTTGTTTTGAAAT

mRNA sequence

TCACAAGACTTTCCTCAATTGAAACACACGTCTTCTTACTTCTTAATTTTCAATTACCAACTGCTACGAACGAATTATAAAATTGTTTTTCAAATTTGAACATAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAAATTTACCTCAATCGATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCAGCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTGTGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCCTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGATACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAATCTAGTTTGTTTTAACTCACATCGATGATGAAGAAATCTAGGGGTAATGTTTTTTTCTCTTTTCACTGCCATTGTATGCAAAAGGTTTTGTTGATTCAATTTTGATAATGAAGAGGATATGGGGATTTGTTTGGTCTGATCATGAACTTTGTTTTTTGTTTGCTATAAAGGTTTTTTGTGTTGTAGTGGGAAAATAAATGGAATAGAATTTTGATTTGGGGAACAATATGAGAGGAAAGGAATTATATTCTTTTTATCATCTGATCAAAGCAATATTTTCCCATCTCTTCTTCTTCTTCTTCTTTAATTCAAACACACCTTTTCCTTTTTCCTTCTCCAATATCTCTTCAAGAACCTTATCACTTTCGAATCATATTAAAAGCACAAATTTTTTTCTTTTTTTATTTTTTTCTCCTATTTTTACTTCATTTTTAAATGGAAAATATATATATTCTAACTCATGAAATAATAAAAATCAAATTTAGGAGTAATATCAATCTATACTTATAAATTTCGAGAGGATTTATCTATTTAGATCATGGAATGTATCGATTTATACTATGGACTTTTGTAATCGTATCAATGTACACTCTCTCTTACGTTTCATTTGAAAAAATATATGTGAAATTTAGAATTGTATCAATTAAACACTATCTTTCTTTAAATAAATAAATCCTCAACTTTCATAAATGAATTTATTTCGACTCTTCGACACAATTTGTTTTGAAAT

Coding sequence (CDS)

ATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGATACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

Protein sequence

MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLADTRLSLKRLRSNRDSIRKRRRRNHLRAWHRSYSSRGCLPTVSLLYIWFGILWSISA
Homology
[Close]
BLAST of Cmc02g0047561 vs. NCBI nr
Match: KAA0035099.1 (hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ95979.1 hypothetical protein E5676_scaffold271G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 3.3e-74
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN 60
           MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN
Sbjct: 1   MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN 60

Query: 61  KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLADTRLSLKRLRSNRDSIRKRRRRNHLR 120
           KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLA TRLSLKRLRSNRDSIRKRRRRNHLR
Sbjct: 61  KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLR 120

Query: 121 AWHRSYSSRGCLPTVSLLYIWFGILWSISA 151
           AWHRSYSSRGCLPTVSLLYIWFGILWSISA
Sbjct: 121 AWHRSYSSRGCLPTVSLLYIWFGILWSISA 150

[Close]
BLAST of Cmc02g0047561 vs. ExPASy TrEMBL
Match: A0A5D3BAD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00490 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN 60
           MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN
Sbjct: 1   MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN 60

Query: 61  KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLADTRLSLKRLRSNRDSIRKRRRRNHLR 120
           KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLA TRLSLKRLRSNRDSIRKRRRRNHLR
Sbjct: 61  KERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLR 120

Query: 121 AWHRSYSSRGCLPTVSLLYIWFGILWSISA 151
           AWHRSYSSRGCLPTVSLLYIWFGILWSISA
Sbjct: 121 AWHRSYSSRGCLPTVSLLYIWFGILWSISA 150

[Close]
BLAST of Cmc02g0047561 vs. ExPASy TrEMBL
Match: A0A0A0LTC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 106/136 (77.94%), Postives = 114/136 (83.82%), Query Frame = 0 

Query: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTIN-KERLPSSDPHLSPP 75
           MAD KPLHVLLI+AP LL+LASQLN IFA TDS TP NLPQQT N +E LPSSDPHLSPP
Sbjct: 1   MADLKPLHVLLIIAP-LLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPP 60

Query: 76  LSNQRAARNN-TKAHRRDQLADTRLSLKRLRSNRDSIRKRRRRNHLRAW-HRSYSSRGCL 135
           LSNQRAARNN TKAH   +LA T++SLKRLRS+RDSIRKRRRRNH RAW  R+YSS GC 
Sbjct: 61  LSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCR 120

Query: 136 PTVSLLYIWFGILWSI 149
            TVSL YIWFGI WSI
Sbjct: 121 LTVSLSYIWFGIFWSI 134

The following BLAST results are available for this feature:
BLAST of Cmc02g0047561 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035099.13.3e-7499.33hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ9597... [more]
BLAST of Cmc02g0047561 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc02g0047561 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BAD81.6e-7499.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTC28.9e-4177.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1[more]
BLAST of Cmc02g0047561 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0047561.1Cmc02g0047561.1mRNA