Cmc02g0046781 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0046781
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty1-DR1 Gag-Pol polyprotein
Location	CMiso1.1chr02: 12179338 .. 12179760 (+)
RNA-Seq Expression	Cmc02g0046781
Synteny	Cmc02g0046781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATCTAAATGATGATGAACCAAAAACATTTGATGAGGTAGTATGCTGTCCTAATGCTAGACATTGGATAAATGCCATGAATGAAGAAATGGAATCTCTCTCTATTAATAATACTTGGACTTTGGTGAAACTACCTAGAGATCGTAAAATCATATCTTGTAAATGGATCTATAAACTAAAGGAAGGAGTTCCCGGTCTTCAACCTCCTAGATATAAAGCTAGGCTTGTTGCCAAAAGCTTTACCCAAAGAAAGGGAATTGACTACAATGAAATATTCTCACCGGTGGTTAAGCAAACCTCCATTCGAATGCTTCTTTCATTAATTGTGCAAGAAGATTTAGAACTTGAACAACTTGATGTTAAAACAACATTCTTACATGGCGATTTGACAGAAGAAATCTACATGAACCAACCATAA

mRNA sequence

ATGAATCATCTAAATGATGATGAACCAAAAACATTTGATGAGGTAGTATGCTGTCCTAATGCTAGACATTGGATAAATGCCATGAATGAAGAAATGGAATCTCTCTCTATTAATAATACTTGGACTTTGGTGAAACTACCTAGAGATCGTAAAATCATATCTTGTAAATGGATCTATAAACTAAAGGAAGGAGTTCCCGGTCTTCAACCTCCTAGATATAAAGCTAGGCTTGTTGCCAAAAGCTTTACCCAAAGAAAGGGAATTGACTACAATGAAATATTCTCACCGGTGGTTAAGCAAACCTCCATTCGAATGCTTCTTTCATTAATTGTGCAAGAAGATTTAGAACTTGAACAACTTGATGTTAAAACAACATTCTTACATGGCGATTTGACAGAAGAAATCTACATGAACCAACCATAA

Coding sequence (CDS)

ATGAATCATCTAAATGATGATGAACCAAAAACATTTGATGAGGTAGTATGCTGTCCTAATGCTAGACATTGGATAAATGCCATGAATGAAGAAATGGAATCTCTCTCTATTAATAATACTTGGACTTTGGTGAAACTACCTAGAGATCGTAAAATCATATCTTGTAAATGGATCTATAAACTAAAGGAAGGAGTTCCCGGTCTTCAACCTCCTAGATATAAAGCTAGGCTTGTTGCCAAAAGCTTTACCCAAAGAAAGGGAATTGACTACAATGAAATATTCTCACCGGTGGTTAAGCAAACCTCCATTCGAATGCTTCTTTCATTAATTGTGCAAGAAGATTTAGAACTTGAACAACTTGATGTTAAAACAACATTCTTACATGGCGATTTGACAGAAGAAATCTACATGAACCAACCATAA

Protein sequence

MNHLNDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTTFLHGDLTEEIYMNQP

Homology

[Close]

BLAST of Cmc02g0046781 vs. NCBI nr
Match: PWA65533.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Artemisia annua])

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-43
Identity = 81/138 (58.70%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 3   HLNDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLK 62
           H+ D EPK + E +  P    W+ AM EE+ESL  N+TW +VKLPR++++ISCKW++K+K
Sbjct: 759 HIEDCEPKNYYEAISSPERHKWVVAMEEEVESLHKNDTWEVVKLPREKRVISCKWLFKIK 818

Query: 63  EGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDV 122
           +G+PG++  RYKAR V + F QR+GIDYNE+FSPVV+ TSIR+LLS++  ++LELEQLDV
Sbjct: 819 DGIPGVESKRYKARYVVRGFDQREGIDYNEVFSPVVRHTSIRLLLSIVALKNLELEQLDV 878

Query: 123 KTTFLHGDLTEEIYMNQP 141
           KT FLHG L EEIY+ QP
Sbjct: 879 KTAFLHGHLEEEIYVEQP 896

[Close]

BLAST of Cmc02g0046781 vs. NCBI nr
Match: KYP48513.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 4   LNDD-EPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLK 63
           +NDD EP ++ E V C ++  W+ AMNEE+ESL  NNTW L KLP+ ++ + CKWIYK K
Sbjct: 505 VNDDVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKK 564

Query: 64  EGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDV 123
           +G+PG++ PR KARLV K F Q++GID+NEIFSPVV+ TSIR+LL+ +   DLELEQLDV
Sbjct: 565 DGIPGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDV 624

Query: 124 KTTFLHGDLTEEIYMNQP 141
           KT FLHG+L EEIYM+QP
Sbjct: 625 KTAFLHGELEEEIYMDQP 642

[Close]

BLAST of Cmc02g0046781 vs. NCBI nr
Match: RZC25599.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-42
Identity = 85/137 (62.04%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 4    LNDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKE 63
            + + EPKT+ E +   +++ W+ AM+EEMESL  N TW LV  P+ +K++ CKWI+K KE
Sbjct: 987  IQNSEPKTWREAIESEDSQLWLQAMSEEMESLRKNKTWILVDQPKKQKVVGCKWIFKKKE 1046

Query: 64   GVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVK 123
            G+PG++ PR+KARLVAK FTQ +GIDYN+IFSPVVK  SIR++LSL+ Q DLELEQLDVK
Sbjct: 1047 GIPGVERPRFKARLVAKGFTQVEGIDYNDIFSPVVKHCSIRIILSLVNQYDLELEQLDVK 1106

Query: 124  TTFLHGDLTEEIYMNQP 141
            TTFLH +L E IYMNQP
Sbjct: 1107 TTFLHENLKETIYMNQP 1123

[Close]

BLAST of Cmc02g0046781 vs. NCBI nr
Match: KAG7546817.1 (Terpene synthase N-terminal domain [Arabidopsis suecica])

HSP 1 Score: 181.4 bits (459), Expect = 5.3e-42
Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1    MNHLND-DEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIY 60
            M+H+ D DEP++F E + C     WI A +EEMESL  N+TW LV  P+DRK+I CKW++
Sbjct: 1937 MSHIIDLDEPESFHEAMNCKERDKWILASDEEMESLLKNHTWILVDRPKDRKVIGCKWVF 1996

Query: 61   KLKEGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQ 120
            KLK+G+   + PRYKARLVAK F+Q +GIDY+E+F+PVVK  +IR++LS++V +D+ELEQ
Sbjct: 1997 KLKQGLTDGEDPRYKARLVAKGFSQIEGIDYHEVFAPVVKHITIRLVLSMVVYQDMELEQ 2056

Query: 121  LDVKTTFLHGDLTEEIYMNQP 141
            LDVKT FLHGDL EEIYM QP
Sbjct: 2057 LDVKTAFLHGDLEEEIYMEQP 2077

[Close]

BLAST of Cmc02g0046781 vs. NCBI nr
Match: KAG7533093.1 (Zinc finger BED-type [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 181.4 bits (459), Expect = 5.3e-42
Identity = 85/141 (60.28%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MNHLND-DEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIY 60
           M+H+ D DEP++F E + C     WI A +EEMESL  N+TW LV  P+DRK+I CKW++
Sbjct: 805 MSHIIDLDEPESFHEAMNCKERDKWILASDEEMESLLKNHTWILVDRPKDRKVIGCKWVF 864

Query: 61  KLKEGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQ 120
           KLK+G+   + PRYKARLVAK F+Q +GIDY+E+F+PVVK  +IR++LS++V +D+ELEQ
Sbjct: 865 KLKQGLTDGEDPRYKARLVAKGFSQIEGIDYHEVFAPVVKHITIRLVLSMVVYQDMELEQ 924

Query: 121 LDVKTTFLHGDLTEEIYMNQP 141
           LDVKT FLHGDL EEIYM QP
Sbjct: 925 LDVKTAFLHGDLEEEIYMEQP 945

[Close]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36
Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 5   NDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEG 64
           +D EP++  EV+  P     + AM EEMESL  N T+ LV+LP+ ++ + CKW++KLK+ 
Sbjct: 807 DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKD 866

Query: 65  VPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKT 124
               +  RYKARLV K F Q+KGID++EIFSPVVK TSIR +LSL    DLE+EQLDVKT
Sbjct: 867 -GDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKT 926

Query: 125 TFLHGDLTEEIYMNQP 141
            FLHGDL EEIYM QP
Sbjct: 927 AFLHGDLEEEIYMEQP 941

[Close]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 6.3e-30
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 6    DDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGV 65
            +D P +FDE+    +   W  A+N E+ +  INNTWT+ K P ++ I+  +W++ +K   
Sbjct: 888  NDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNE 947

Query: 66   PGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTT 125
             G  P RYKARLVA+ FTQ+  IDY E F+PV + +S R +LSL++Q +L++ Q+DVKT 
Sbjct: 948  LG-NPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTA 1007

Query: 126  FLHGDLTEEIYMNQP 141
            FL+G L EEIYM  P
Sbjct: 1008 FLNGTLKEEIYMRLP 1021

[Close]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 6    DDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDR-KIISCKWIYKLKEG 65
            + EP+T  + +       W NAM  E+ +   N+TW LV  P     I+ C+WI+  K  
Sbjct: 953  ESEPRTAIQAL---KDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 66   VPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKT 125
              G    RYKARLVAK + QR G+DY E FSPV+K TSIR++L + V     + QLDV  
Sbjct: 1013 SDG-SLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNN 1072

Query: 126  TFLHGDLTEEIYMNQP 141
             FL G LT+++YM+QP
Sbjct: 1073 AFLQGTLTDDVYMSQP 1084

[Close]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-22
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 24   WINAMNEEMESLSINNTWTLVKLPRDR-KIISCKWIYKLKEGVPGLQPPRYKARLVAKSF 83
            W  AM  E+ +   N+TW LV  P     I+ C+WI+  K    G    RYKARLVAK +
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDG-SLNRYKARLVAKGY 1010

Query: 84   TQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTTFLHGDLTEEIYMNQP 141
             QR G+DY E FSPV+K TSIR++L + V     + QLDV   FL G LT+E+YM+QP
Sbjct: 1011 NQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQP 1067

[Close]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-15
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 24  WINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVPGLQPPRYKARLVAKSFT 83
           W  AM EE+++LS N TW LV  P ++ I+ CKW++K K    G    R KARLVAK F 
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL-DRLKARLVAKGFH 99

Query: 84  QRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQ 120
           Q +GI + E +SPVV+  +IR +L+  V + LE+ Q
Sbjct: 100 QEEGIYFVETYSPVVRTATIRTILN--VAQQLEVGQ 132

[Close]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL
Match: A0A2U1MW82 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Artemisia annua OX=35608 GN=CTI12_AA173710 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 81/138 (58.70%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 3   HLNDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLK 62
           H+ D EPK + E +  P    W+ AM EE+ESL  N+TW +VKLPR++++ISCKW++K+K
Sbjct: 759 HIEDCEPKNYYEAISSPERHKWVVAMEEEVESLHKNDTWEVVKLPREKRVISCKWLFKIK 818

Query: 63  EGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDV 122
           +G+PG++  RYKAR V + F QR+GIDYNE+FSPVV+ TSIR+LLS++  ++LELEQLDV
Sbjct: 819 DGIPGVESKRYKARYVVRGFDQREGIDYNEVFSPVVRHTSIRLLLSIVALKNLELEQLDV 878

Query: 123 KTTFLHGDLTEEIYMNQP 141
           KT FLHG L EEIY+ QP
Sbjct: 879 KTAFLHGHLEEEIYVEQP 896

[Close]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL
Match: A0A151S124 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_029805 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 4   LNDD-EPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLK 63
           +NDD EP ++ E V C ++  W+ AMNEE+ESL  NNTW L KLP+ ++ + CKWIYK K
Sbjct: 505 VNDDVEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKK 564

Query: 64  EGVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDV 123
           +G+PG++ PR KARLV K F Q++GID+NEIFSPVV+ TSIR+LL+ +   DLELEQLDV
Sbjct: 565 DGIPGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDV 624

Query: 124 KTTFLHGDLTEEIYMNQP 141
           KT FLHG+L EEIYM+QP
Sbjct: 625 KTAFLHGELEEEIYMDQP 642

[Close]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL
Match: A0A445LQL6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3848 GN=D0Y65_004333 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-42
Identity = 85/137 (62.04%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 4    LNDDEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKE 63
            + + EPKT+ E +   +++ W+ AM+EEMESL  N TW LV  P+ +K++ CKWI+K KE
Sbjct: 987  IQNSEPKTWREAIESEDSQLWLQAMSEEMESLRKNKTWILVDQPKKQKVVGCKWIFKKKE 1046

Query: 64   GVPGLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVK 123
            G+PG++ PR+KARLVAK FTQ +GIDYN+IFSPVVK  SIR++LSL+ Q DLELEQLDVK
Sbjct: 1047 GIPGVERPRFKARLVAKGFTQVEGIDYNDIFSPVVKHCSIRIILSLVNQYDLELEQLDVK 1106

Query: 124  TTFLHGDLTEEIYMNQP 141
            TTFLH +L E IYMNQP
Sbjct: 1107 TTFLHENLKETIYMNQP 1123

[Close]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL
Match: A0A6D2KKN5 (Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS42285 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.4e-42
Identity = 82/134 (61.19%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 7   DEPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVP 66
           DEP+T+ E +   + + W++A +EEM+SL  N TW LV+ P+D+K+I CKWI+KLK G+P
Sbjct: 356 DEPRTYFEALKSKDGKRWVSASDEEMDSLRRNYTWILVERPKDQKVIGCKWIFKLKPGIP 415

Query: 67  GLQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTTF 126
            ++ PRYKARLVAK + Q +GIDYNE+F+PVVK TSIR+LLSL+V +D+ELEQLDVKT F
Sbjct: 416 EVELPRYKARLVAKGYAQIEGIDYNEVFAPVVKHTSIRLLLSLVVNQDMELEQLDVKTAF 475

Query: 127 LHGDLTEEIYMNQP 141
           LHG L E+IYM+QP
Sbjct: 476 LHGILHEKIYMDQP 489

[Close]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL
Match: Q9SHR5 (F28L22.3 protein OS=Arabidopsis thaliana OX=3702 GN=F28L22.3 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.5e-42
Identity = 80/133 (60.15%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 8   EPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVPG 67
           EP+++ E +   +   W  A ++EM+SL  N TW LV  P+DRKII C+W++KLK G+PG
Sbjct: 838 EPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPG 897

Query: 68  LQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTTFL 127
           ++P R+KARLVAK +TQR+G+DY EIF+PVVK  SIR+L+SL+V +DLELEQ+DVKTTFL
Sbjct: 898 VEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFL 957

Query: 128 HGDLTEEIYMNQP 141
           HGDL EE+YM QP
Sbjct: 958 HGDLEEELYMEQP 970

[Close]

BLAST of Cmc02g0046781 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-27
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 8   EPKTFDEVVCCPNARHWINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVPG 67
           EP T++E         W  AM++E+ ++   +TW +  LP ++K I CKW+YK+K    G
Sbjct: 85  EPSTYNE---AKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 144

Query: 68  LQPPRYKARLVAKSFTQRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQLDVKTTFL 127
               RYKARLVAK +TQ++GID+ E FSPV K TS++++L++    +  L QLD+   FL
Sbjct: 145 -TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 204

Query: 128 HGDLTEEIYMNQP 141
           +GDL EEIYM  P
Sbjct: 205 NGDLDEEIYMKLP 213

[Close]

BLAST of Cmc02g0046781 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 81.3 bits (199), Expect = 7.0e-16
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 24  WINAMNEEMESLSINNTWTLVKLPRDRKIISCKWIYKLKEGVPGLQPPRYKARLVAKSFT 83
           W  AM EE+++LS N TW LV  P ++ I+ CKW++K K    G    R KARLVAK F 
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL-DRLKARLVAKGFH 99

Query: 84  QRKGIDYNEIFSPVVKQTSIRMLLSLIVQEDLELEQ 120
           Q +GI + E +SPVV+  +IR +L+  V + LE+ Q
Sbjct: 100 QEEGIYFVETYSPVVRTATIRTILN--VAQQLEVGQ 132

The following BLAST results are available for this feature:

BLAST of Cmc02g0046781 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA65533.1	3.7e-43	58.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Artemisia annua]	[more]
KYP48513.1	2.4e-42	61.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
RZC25599.1	4.1e-42	62.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]	[more]
KAG7546817.1	5.3e-42	60.28	Terpene synthase N-terminal domain [Arabidopsis suecica]	[more]
KAG7533093.1	5.3e-42	60.28	Zinc finger BED-type [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of Cmc02g0046781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-36	57.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.3e-30	45.93	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.0e-23	43.38	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-22	47.46	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	9.8e-15	45.83	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0046781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1MW82	1.8e-43	58.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Artemisia annua O...	[more]
A0A151S124	1.2e-42	61.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A445LQL6	2.0e-42	62.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3...	[more]
A0A6D2KKN5	4.4e-42	61.19	Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=16854...	[more]
Q9SHR5	7.5e-42	60.15	F28L22.3 protein OS=Arabidopsis thaliana OX=3702 GN=F28L22.3 PE=4 SV=1	[more]

BLAST of Cmc02g0046781 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.0e-27	44.36	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.0e-16	45.83	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 38..140 e-value: 9.1E-33 score: 113.9
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0046781.1	Cmc02g0046781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding