Cmc02g0046451 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0046451
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr02: 11469147 .. 11469782 (-)
RNA-Seq Expression	Cmc02g0046451
Synteny	Cmc02g0046451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTCGAAATAGAGTCTATGTTCTTTAATTTTGTCTGGACTCTAGTAGATCAACCAAATAACATAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGTTGGTAAAGTACATACTTTCAAGGCTCGACTTGTGGCAAAGGGTTATACCCAAAGAGAAGAAGTGGACTATGAAGAAACATTCTCTCCTGTTTCCATGCTTAAGTCCATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATATAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGGCTAAACTAGAGGAGTTTATTAAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAACAAGCATCTAGATCCTGGAATATAAAATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCGTCAATTCCGTTGTAGCATTCTTAGTTTTATATGTAGATGATATTTTACTCATTGGGAATGACATAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACGCAACTTAAAATAAAATATTTGGGAGATGCATAA

mRNA sequence

ATGAACCTCGAAATAGAGTCTATGTTCTTTAATTTTGTCTGGACTCTAGTAGATCAACCAAATAACATAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGTTGGTAAAGTACATACTTTCAAGGCTCGACTTGTGGCAAAGGGTTATACCCAAAGAGAAGAAGTGGACTATGAAGAAACATTCTCTCCTGTTTCCATGCTTAAGTCCATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATATAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGGCTAAACTAGAGGAGTTTATTAAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAACAAGCATCTAGATCCTGGAATATAAAATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCGTCAATTCCGTTGTAGCATTCTTAGTTTTATATGTAGATGATATTTTACTCATTGGGAATGACATAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACGCAACTTAAAATAAAATATTTGGGAGATGCATAA

Coding sequence (CDS)

ATGAACCTCGAAATAGAGTCTATGTTCTTTAATTTTGTCTGGACTCTAGTAGATCAACCAAATAACATAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGTTGGTAAAGTACATACTTTCAAGGCTCGACTTGTGGCAAAGGGTTATACCCAAAGAGAAGAAGTGGACTATGAAGAAACATTCTCTCCTGTTTCCATGCTTAAGTCCATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAATATAGCCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATGGCTAAACTAGAGGAGTTTATTAAAAAGGGTCAAGAACAAAAAGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAACAAGCATCTAGATCCTGGAATATAAAATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACCTTATGTTTACAAAAAGTTCGTCAATTCCGTTGTAGCATTCTTAGTTTTATATGTAGATGATATTTTACTCATTGGGAATGACATAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACGCAACTTAAAATAAAATATTTGGGAGATGCATAA

Protein sequence

MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEVDYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQEQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVDDILLIGNDIGYLTDIKKWLATQLKIKYLGDA

Homology

[Close]

BLAST of Cmc02g0046451 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 361.3 bits (926), Expect = 5.7e-96
Identity = 176/211 (83.41%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
            MNLE+ESM+FN VWTLVD P+++KPIGCKWIYKRKRDQ GKV TFKARLVAKGYTQ+E V
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
            DYEETFSPV+MLKSIRILLSIATFY+YEIWQMDV  AFLNGNLEESIYM + E FI + Q
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
            EQKVCKLQKSIYGLKQASRSWNI+FDTAIKSYGFEQNVDEP VYKK VNSVVAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
            DILLIGND+ YLTD+KKWL TQ ++K LG+A
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEA 1034

[Close]

BLAST of Cmc02g0046451 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 169/211 (80.09%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+L++ESM+ N VWTLVDQPNNI+PIGCKWIYKRKRDQ  KV TF+ARLVAKGYTQ+E +
Sbjct: 154 MDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGI 213

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSP++M+KSIRILLSIATFYDYEIWQMDV  AFLNGNLEESIYM + E FI+KGQ
Sbjct: 214 DYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQ 273

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKLQKSIYGLKQASRSWNI+FDT IKSYGFEQNVDEP VYK+ +NS VAFLVLYVD
Sbjct: 274 EQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVD 333

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGN++ +LTDIK+WL TQ ++K LG A
Sbjct: 334 DILLIGNEVDHLTDIKEWLDTQFQMKDLGSA 364

[Close]

BLAST of Cmc02g0046451 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 8.5e-92
Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN VW LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 342 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIWQMDV  AFLNGNLEESI+M++ E FI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEP VYKK     VAFLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 521

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 552

[Close]

BLAST of Cmc02g0046451 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 8.5e-92
Identity = 168/211 (79.62%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN +W LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 342 MDLEMESMYFNLMWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIW+MDVN AFLNGNLEESI+M++ E FI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGFEQNVDEP VYKK     V FLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVD 521

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 552

[Close]

BLAST of Cmc02g0046451 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 8.5e-92
Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN VW LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 732 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 791

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIWQMDV  AFLNGNLEESI+M++ E FI +GQ
Sbjct: 792 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 851

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEP VYKK     VAFLVLYVD
Sbjct: 852 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 911

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 912 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 942

[Close]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-44
Identity = 94/212 (44.34%), Postives = 138/212 (65.09%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
            M  E+ES+  N  + LV+ P   +P+ CKW++K K+D   K+  +KARLV KG+ Q++ +
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
            D++E FSPV  + SIR +LS+A   D E+ Q+DV  AFL+G+LEE IYM + E F   G+
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVY-KKFVNSVVAFLVLYV 180
            +  VCKL KS+YGLKQA R W +KFD+ +KS  + +   +P VY K+F  +    L+LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
            DD+L++G D G +  +K  L+    +K LG A
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPA 1041

[Close]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-38
Identity = 82/207 (39.61%), Postives = 126/207 (60.87%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLV-DQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREE 60
            M  EI +   N  W LV   P+++  +GC+WI+ +K +  G ++ +KARLVAKGY QR  
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   VDYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKG 120
            +DY ETFSPV    SIRI+L +A    + I Q+DVN AFL G L + +YM++   FI K 
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  QEQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYV 180
            +   VCKL+K++YGLKQA R+W ++    + + GF  +V +  ++       + ++++YV
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1151

Query: 181  DDILLIGNDIGYLTDIKKWLATQLKIK 207
            DDIL+ GND   L +    L+ +  +K
Sbjct: 1152 DDILITGNDPTLLHNTLDNLSQRFSVK 1178

[Close]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 81/207 (39.13%), Postives = 125/207 (60.39%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLV-DQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREE 60
            M  EI +   N  W LV   P ++  +GC+WI+ +K +  G ++ +KARLVAKGY QR  
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   VDYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKG 120
            +DY ETFSPV    SIRI+L +A    + I Q+DVN AFL G L + +YM++   F+ K 
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  QEQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYV 180
            +   VC+L+K+IYGLKQA R+W ++  T + + GF  ++ +  ++       + ++++YV
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYV 1134

Query: 181  DDILLIGNDIGYLTDIKKWLATQLKIK 207
            DDIL+ GND   L      L+ +  +K
Sbjct: 1135 DDILITGNDTVLLKHTLDALSQRFSVK 1161

[Close]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 149.1 bits (375), Expect = 5.8e-35
Identity = 78/213 (36.62%), Postives = 132/213 (61.97%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
            +N E+ +   N  WT+  +P N   +  +W++  K +++G    +KARLVA+G+TQ+ ++
Sbjct: 910  INTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQI 969

Query: 61   DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
            DYEETF+PV+ + S R +LS+   Y+ ++ QMDV  AFLNG L+E IYM +L + I    
Sbjct: 970  DYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM-RLPQGISCNS 1029

Query: 121  EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVY---KKFVNSVVAFLVL 180
            +  VCKL K+IYGLKQA+R W   F+ A+K   F  +  +  +Y   K  +N  + +++L
Sbjct: 1030 D-NVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLL 1089

Query: 181  YVDDILLIGNDIGYLTDIKKWLATQLKIKYLGD 211
            YVDD+++   D+  + + K++L  + ++  L +
Sbjct: 1090 YVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNE 1119

[Close]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot
Match: Q03619 (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-11
Identity = 55/188 (29.26%), Postives = 97/188 (51.60%), Query Frame = 0


Query: 26   IGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEVDYEETFSPVSMLKSIR-----ILLS 85
            I   +I+ RKRD      T KAR VA+G     ++ + +T+ P     ++        LS
Sbjct: 1284 INSMFIFNRKRD-----GTHKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLS 1343

Query: 86   IATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQEQKVCKLQKSIYGLKQASRS 145
            +A   +Y I Q+D++ A+L  +++E +Y+         G   K+ +L+KS+YGLKQ+  +
Sbjct: 1344 LALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSGAN 1403

Query: 146  WNIKFDTAIKSYGFEQ-NVDEPYVYKKFVNSVVAFLVLYVDDILLIGNDIGYLTDIKKWL 205
            W   ++T IKSY  +Q  ++E   +     +    + L+VDD++L   D+    +  K +
Sbjct: 1404 W---YET-IKSYLIKQCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDL----NANKKI 1450

Query: 206  ATQLKIKY 208
             T LK +Y
Sbjct: 1464 ITTLKKQY 1450

[Close]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.7e-96
Identity = 176/211 (83.41%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1    MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
            MNLE+ESM+FN VWTLVD P+++KPIGCKWIYKRKRDQ GKV TFKARLVAKGYTQ+E V
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
            DYEETFSPV+MLKSIRILLSIATFY+YEIWQMDV  AFLNGNLEESIYM + E FI + Q
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
            EQKVCKLQKSIYGLKQASRSWNI+FDTAIKSYGFEQNVDEP VYKK VNSVVAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
            DILLIGND+ YLTD+KKWL TQ ++K LG+A
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEA 1034

[Close]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.5e-94
Identity = 169/211 (80.09%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+L++ESM+ N VWTLVDQPNNI+PIGCKWIYKRKRDQ  KV TF+ARLVAKGYTQ+E +
Sbjct: 154 MDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGI 213

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSP++M+KSIRILLSIATFYDYEIWQMDV  AFLNGNLEESIYM + E FI+KGQ
Sbjct: 214 DYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQ 273

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKLQKSIYGLKQASRSWNI+FDT IKSYGFEQNVDEP VYK+ +NS VAFLVLYVD
Sbjct: 274 EQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVD 333

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGN++ +LTDIK+WL TQ ++K LG A
Sbjct: 334 DILLIGNEVDHLTDIKEWLDTQFQMKDLGSA 364

[Close]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92
Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN VW LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 732 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 791

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIWQMDV  AFLNGNLEESI+M++ E FI +GQ
Sbjct: 792 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 851

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEP VYKK     VAFLVLYVD
Sbjct: 852 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 911

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 912 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 942

[Close]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92
Identity = 168/211 (79.62%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN +W LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 342 MDLEMESMYFNLMWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIW+MDVN AFLNGNLEESI+M++ E FI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGFEQNVDEP VYKK     V FLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVD 521

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 552

[Close]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92
Identity = 169/211 (80.09%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+LE+ESM+FN VW LVD P  +KPIGCKWIYKRKRD  GKV TFKARLVAKGYTQRE V
Sbjct: 342 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           DYEETFSPV+MLKSIRILLSIATFYDYEIWQMDV  AFLNGNLEESI+M++ E FI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLVLYVD 180
           EQKVCKL +SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEP VYKK     VAFLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 521

Query: 181 DILLIGNDIGYLTDIKKWLATQLKIKYLGDA 212
           DILLIGND+GYLTD+K WLA Q ++K LG+A
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEA 552

[Close]

BLAST of Cmc02g0046451 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-42
Identity = 86/213 (40.38%), Postives = 134/213 (62.91%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M+ EI +M     W +   P N KPIGCKW+YK K +  G +  +KARLVAKGYTQ+E +
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYEETFSPVSMLKSIRILLSIATFYDYEIWQMDVNIAFLNGNLEESIYMAKLEEFIKKGQ 120
           D+ ETFSPV  L S++++L+I+  Y++ + Q+D++ AFLNG+L+E IYM     +  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----QKVCKLQKSIYGLKQASRSWNIKFDTAIKSYGFEQNVDEPYVYKKFVNSVVAFLV 180
           +      VC L+KSIYGLKQASR W +KF   +  +GF Q+  +   + K   ++   ++
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 181 LYVDDILLIGNDIGYLTDIKKWLATQLKIKYLG 210
           +YVDDI++  N+   + ++K  L +  K++ LG
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314

[Close]

BLAST of Cmc02g0046451 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MNLEIESMFFNFVWTLVDQPNNIKPIGCKWIYKRKRDQVGKVHTFKARLVAKGYTQREEV 60
           M  E++++  N  W LV  P N   +GCKW++K K    G +   KARLVAKG+ Q E +
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYEETFSPVSMLKSIRILLSIA 83
            + ET+SPV    +IR +L++A
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0046451 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	5.7e-96	83.41	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0045356.1	1.5e-93	80.09	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	8.5e-92	80.09	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	8.5e-92	79.62	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	8.5e-92	80.09	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc02g0046451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-44	44.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	9.5e-38	39.61	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.1e-37	39.13	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.8e-35	36.62	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q03619	5.8e-11	29.26	Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc02g0046451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	2.7e-96	83.41	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TTA2	7.5e-94	80.09	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5A7TZD0	4.1e-92	80.09	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CZY3	4.1e-92	79.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]
A0A5D3CYF4	4.1e-92	80.09	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]

BLAST of Cmc02g0046451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.7e-42	40.38	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-12	41.46	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 12..210 e-value: 7.0E-62 score: 209.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..206
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0046451.1	Cmc02g0046451.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding